GBrowse Details

Vigan.04G351000.01

Basic Information:
Name: Vigan.04G351000.01
Multiple alignment
Variant Information
Position: Chr04:47242289..47247875 (- strand)
Length: 5587
Functional Information:
Description: Similar to UPF0554 protein-like. [XP_004494235.1, Cicer arietinum]
InterPro: Protein of unknown function DUF2305 (IPR019363)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:39.66,15.25,7.06,10.94,7.63,9.81,3.42,7.43
Arabidopsis thaliana homolog: AT3G11620.2
Automatic updates:
Name: NM_001252831 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UPF0554 protein-like (LOC100790552), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:47242289..47242636 (- strand)
Length: 348
Type: three_prime_UTR
Position: Chr04:47242637..47242783 (- strand)
Length: 147
Type: CDS
Position: Chr04:47244057..47244161 (- strand)
Length: 105
Type: CDS
Position: Chr04:47244473..47244523 (- strand)
Length: 51
Type: CDS
Position: Chr04:47244742..47244889 (- strand)
Length: 148
Type: CDS
Position: Chr04:47245225..47245307 (- strand)
Length: 83
Type: CDS
Position: Chr04:47245416..47245475 (- strand)
Length: 60
Type: CDS
Position: Chr04:47246164..47246214 (- strand)
Length: 51
Type: CDS
Position: Chr04:47246806..47246856 (- strand)
Length: 51
Type: CDS
Position: Chr04:47246930..47246958 (- strand)
Length: 29
Type: CDS
Position: Chr04:47247055..47247126 (- strand)
Length: 72
Type: CDS
Position: Chr04:47247215..47247288 (- strand)
Length: 74
Type: CDS
Position: Chr04:47247365..47247472 (- strand)
Length: 108
Type: CDS
Position: Chr04:47247766..47247842 (- strand)
Length: 77
Type: CDS
Position: Chr04:47247843..47247875 (- strand)
Length: 33
Type: five_prime_UTR

>Vigan.04G351000.01 class=Sequence position=Chr04:47242289..47247875 (- strand)
CTGTGTGTGT TGTAACTACC GCGTTTCAAG CAAATGTTTC CTGGCCTCGG GGGTTGGACT GCTCGATCTT TCGCTCACTC
TGTGCTGTTG CCTTCCCTCG CTTCCTCCAG GTACCTTCTC TTACTTCTTC CATTACCCTT TTTTTTTCCT TGCTTTTCAA
TAGTGCTTGT TTTCATTTCT TCTCTCTGCA GTTCTAAGTG CATATACAAA TTTGGCACTG CATCAACTTC ACAAGTGCTG
TCTCTCAGAT GTGCATTTCT GTTACATTTG CATTTGGGTC GCATATGAAA ACTTCATTTT ATCCTGAATT TTACCCAATA
AGATTGCCGG CTATAACGAT TCCCTAAATT AATTTAATAC GTTTTTTTTA TAACCAATTC ATTTGTAAAA TTTTGTCTTC
CAGGACAAGG TTTAGAGCCA AGTGTTTGGT TAATTGCAGC ATGACGGTGA ACGATAACTT GCTTTCCAAA CCTATAAGGC
GTGCTAATTT TCGATTATGC AATGTTTCAG GGTATGTATT GGAATATCGA ACCTTGAATT CACGATTTCA TTTATTTATT
CCATCATTAA TATGTCCTTT TGTCCAGTTA CATTTCTGAA GTATTGGAGA TTCGGGCTGA GGCTCCTAAA CTGCATGTTC
TGCTTGTTCC TGGAAACCCA GGTGTGGCCT TGATTGTGTA TTTGCGCTTG TGTTTCCATG TTAGGTTTGT TTGGTTGTTT
GAGCCTTTTG GTGTTTTTGA TTGTTGCAGG TGTTGTTTTA TTCTACAAGG ACTTTGTGGA ATTTCTATAT GAGCTGCTGG
AGGGAACTGC GTCTGTGACT GGTAAGTAAA ATAATGGAAG CACTTTCTTT CTAGCTACTT ACATGGATAT TTGGTGACCA
TTAGGCTCAC TAGTGATGTT TCTATGTGAA CTAGCAGCTA TCGGCCATGT TTCTCACTCA AGAAAGGTTC ATATATTTTG
TTTCGATTGA TTTGTTAGCG TGGCATTAGA AGGTCTCTTA CACAGAGTTC TGTTTCCAGG ACTTGGAACA TGGACGCATG
TTTTCTTTAC AAGAACAAAT TGATCACAAG GTAATAAGGC TTACTATTTT GATATTAGTA ATCGTTGACT GTTTTTGGTT
GGAGAAACTT ATCAATGGTT TATTTCAATC TTAATTTATA AATTGGTTAG ACTTAGTGTG CTAGCGAGAA GTGCTAACTG
GCCTTGACCC TTTAATTTCT ATTACAATTT TTTTTTTATT AAATTAGTGA ATAAGAATAC CTTTTAAGTT TTCCATTCAT
TTTTAGAAGT TCTATGAAAT GTTATAGGTT TATCTAATCT ATTGTTGAAT AGTATGAAAA CTGTGGTAGA ATTGAGTATT
TAAACTTTCA TTTCAGATTG CACTGTGCTC AACTGTGGAA AAGAAATAAT TGTCATCGTG GAATTGTTTC TACTATGTCA
TGTGCTGGCT TTTGTATTGG CATATTGAGA ATTTGTCATA TTTATGCCAC ATGCATTCAT CCCTCCCTCT CCCTCTCTTT
TGATCATTAC AGTTTTCTGT CATTTTATAA TCTTCCATGC TTTATGGATT GACATTCGTC ATTCTTGATT TAAATAATTG
GACTTAGCAG TGTTAATTAG TGATAGTAGT CAAAGTCTTC ACTTTCCTTG TGTGTTTGTA GATTGACTTC ATCATACAGG
AGTTGCAAAA TATTGAGATT CCTATATTAC TGGTGGGTTC TTCTATATCT CATGTCCATT ATTCTTTTCC AATGTCGTGT
TGATTTGAAG AGTTGTAGGT GCTAAAATAC CAAAATGCTG CCTAGTGTAA AAATAATCTG TATATGAAAA ATGGTAGTCA
TGTAATAATA CAAAATGAAA TTTTGTTCTA CTATTTTAAT GATGGTGTTT TGTAATTTAA AATTTTGAGC CAATACTATG
GTTATCTTGT GTTCGCCTGC CACCACACTT GTGCTGCAAT GCAACAGATG TCAGAGCAAG TTAACATCTT CTTAGACACA
TAATTTTTGT TGACCACGAC ATATAAGAGG AGTGACATTA ATGTGCAGCT TAAACTGGGG AAAAAGTATG TAGAGTTTTT
TATGTGCGCG GAGAAATAAT GTTATATTGC TCTTAAGAAA AGTCATCCAT GATTTTATAG TCTAATTTAT AGTGTCATAT
CAGAATATAT TTCTCGTTGT GATATGTGAC TGCCGAGTTC AAAACTTGTG GCCTGCAACA CCAAACGTCC TTTTATTCAC
TAAAATAGAA CAATTTTGGA AAACCTTCAA AGGATCACCT TGAGTCTAGT TCTTAGCTAA AGTAATTTCT AAATAATTGT
TATCTGTGTT TTCAAAACAC AGAAAAGTTT AAGTTCATTC TGAAATGAAA ATTGGTAGCT AATTAGAATT TTCTCTCCAG
GTTGGGCACT CTATTGGTTC ATACATATCT ATTGAAATGT TCAAGAAGTC TCCAGAGAAG GTGATAGGAA CGATGCATAT
TTAATTAATC TTCATCCCAT CATGCTGTCT GTCCATCGCT TCTGATTTTC GTAAACTGTG TATTTGCATT ATCTCCTGGG
CTCTGTAGGT GAAATATTGT ATTGGACTTT ATCCATTTTT GACGTTAAAT CCGCAATCAA CAAAACAGTT GTTAATTGGA
AAAATTGCAA AGTAAGTCTC AACTCAACCC CCTTCCCCAA TCAAACACCT TGACATTACC TTCTTTGTTA GAGATGATAT
GAACTTTTAG TGACATTATG AGCTTAGATA TCACAAATTT TGATGTCGTA CACTCTATTT CACACCTCAT GGCATTCACT
TTATGCATAA AAACAATTTT AATAATTTGA TCTGAAAATA AACTTCAGAT ATAAATTAAA TGGTGGTAAT TATATGTTTA
TTATTACTAA TTATTAAGCA TGAAAAAATT TCTTCTACTT ATTTTCTTTT GAAAATGTTA GACTAGTTTA TACGAAATGA
CTAAATGATG TTACATGGGG TTTCAGATCC CAAGTTCTAG CTGCTGCTCT TAGTTACCTG ATAGCATCAT TAGGATGGCT
ACCTGTCCAA GCTTTAAGGT TCGTGGTCAG AAAATCCCTT GGGAAGTCAT GGTCAGTCAA TGCAGTTGAT GCTGCTTGCT
CTCACTTGTC ACAGGTTAGC TTTACTGTTC AAAGAAGGCT TCAATGATTA GTCACATTAA ACTTGTAATT TAGTTCATTT
TGTTTTGGTC ATTCTTCTTA TCGATCCCTT TATTAATATT ATTAGTGGCA GTGCAACATT CTACATTTAA TTGACACTGA
GTTGCAGCTT TTTATTGTGG AATTGGTCTG CACTTTTTCT TTTGTATTAA TTCCAACCTT AATAATTCAC AGTACCATAC
TATGCGGAAT GTTCTGTATA TGGCCATGAC AGAATTCAGA AAGGTAGTAA TGCTTCCTAT CTACAAATAT ACCTATCAAG
TTTTATAAAT TATCGTAAAG CTGTTTCACT TTATTTTACT CTTTAGCAAT TTTTTGATTT ACATATATGG CACCGGGGAC
TTGTTGCATT GATGTGGAAG ATGGCATGCC ACTGAAAATT GCACAAGGAT ACAACATCTA ATGATAAAAG AAGTTGAAAT
TGAGAATTTA AAAATGAACG GGTAAATTGA CTGGAATAGA GGGCAATTTT CATCTGGGTC TCAAAAGGTA AAATATCCAA
AACTGCATTT ATAATCGTGT GCTTAACCTG CTAGCTTTCA GAGGCACCAG ATTGGACATT TATGAAAGAA AGGAAGGCTC
AATTGACGTT TTTATTTGGT ATCGACGACC ACTGGGGCCC ACTTGATTTG CTTGAAGAGG TTTGCTTTTA TTTATTTTAA
TCACTGTTTT TATTATCTGG AAAGCTTTTT CATCATCTGG AGGTATGAGA CAAACATTTG TACCTCAAGC ATCTTAAATA
GATTTAGTCT CCACGGGAGA GCATGTGTAG GATGATTATA TGCTTGTGAT TTTATCCTAA TCTACGTGAT CATTCATGGT
ACCAAAATGG TGCAATGTAA TTATTAAATA GATTTCCAAA CTTTACTAAC AAGTTTATTT CCCTCCTTTT ATCTTAATGA
AAGATCATGT ATCAAAATTT GCAGCAGATT TCTCTATAAA AAAAAAGTAA AGCAAACTAG AATATTATCT TTGTTTTATT
TTTATAATTT TCATTGCTGA TCTTTTGTTT TTTCAGAGAA ATCAAATAGC CTTTTAAATT TTCCTAGCCA TTAAGCTGAA
GGTTTGGATT TGTGTTTGAA TCTCAACAAC AAGAACTAAA ATATGTGATT AACTCCTTCC TCTTTCTCTA CCCCCAGTTT
ATGGAGTGGA CCTCCTACTC TAAATACAGC AAAATATGTT CATTAAATTT TCTCGTTTTA TTTTTTAGAA AAAGAAAGCA
AAAGTCAATC AAATTGTGAT GTCAAAAATT GCAGTACTTT GATTATAAAT ATGATACTTA ATTTAACCTT TAGTATAATA
GTAGTCATTT ATTTCTCTCT GATATTAAAT TTAATTCATT TTCTTGATTT GTGTTTTAGA CTACAGGTAT TGTGATTGAC
TGAGCAAAAT AAATTAGATT ATGGTATAAC CTTTCAATAA TTTGGCTCTT AGTAAGATAT ACAGGAAGCA CGTTGTTTTT
CCCTCTTTTC TCTTTGACAT TACAAAGAAA TGGACTATTT CTAGGAGTGA ACTGGGCATC CAATGTCTAC AGTATAGACC
TTCCTGGGAG AAGGTTTTAT ACTGATGGGA AGATTGATAG ATATTATTGT TTGTGATGCT ATGAAGTAAT TTTTGTGGTG
TTAAATTCCT AATACTGGTT TTAGCACGCA GCTTATGTAT GTGTGCTATC CTAAGTAGAC TTGAAATACC ACCAATTCTT
TATATCTTCA ACTTAAACAC TAATTACGGG AGAATAGCGG GATGAATATT TGTATAACTC AACACATTCA TCGAAATAAT
AGTTAGTCAT GATCAAAGCA TTTCTTTTTC TTTTCCATGT TTCCCAACTA ATTTTTCTTT GTTCCTTTCT TCCTCATCTG
TGGAATATTA AATGATTATT CTGGCTTAAG TTATGGTTTC TTCTGGTTAC AGATTTCAAA GCAGGTTCCC GGTGTTGCCG
TATCTATTGA ACGAGAAAAC CACACCCATG GTTTCTGTTG CACAGAGGCC GGCTCATTAT GGGTTGCTCA GCATGTGGCA
AACTGTATCA AGAAGCAGAC AGCTTGTACA AACCAATGAG GTCTGACTCT CTTGCTGTTC GCTTGTGTTG TGTGAGTTTT
CTATGTTAGT CTCAGAAAGG ACTGAACCAC AAATAAATTT GAAACGATGC TTATAGTGCA TGCTATAAAA AGTGTAGTTT
CTTTCATTCA TCAGTGCTGA TAGTGCATTC AACAGTTTTA ACATCGCCAA CAACTGTATT TTATGACTTA GTAGTTCCAC
CGTCCTCCAG TTGTACAAAG TAAACTATCG CCAACTGCAT TTTGAACCCT CCCTACCCCC TCTTTTCCAA AAAATTTAGG
ACACGTTTCT CAAAAACCTT AGTTTTTATC GTTTATCAAA TTGGTGTCAA GCATCAACTT CCAGAAA

>Vigan.04G351000.01
CTGTGTGTGT TGTAACTACC GCGTTTCAAG CAAATGTTTC CTGGCCTCGG GGGTTGGACT GCTCGATCTT TCGCTCACTC
TGTGCTGTTG CCTTCCCTCG CTTCCTCCAG GACAAGGTTT AGAGCCAAGT GTTTGGTTAA TTGCAGCATG ACGGTGAACG
ATAACTTGCT TTCCAAACCT ATAAGGCGTG CTAATTTTCG ATTATGCAAT GTTTCAGGTT ACATTTCTGA AGTATTGGAG
ATTCGGGCTG AGGCTCCTAA ACTGCATGTT CTGCTTGTTC CTGGAAACCC AGGTGTTGTT TTATTCTACA AGGACTTTGT
GGAATTTCTA TATGAGCTGC TGGAGGGAAC TGCGTCTGTG ACTGCTATCG GCCATGTTTC TCACTCAAGA AAGGACTTGG
AACATGGACG CATGTTTTCT TTACAAGAAC AAATTGATCA CAAGATTGAC TTCATCATAC AGGAGTTGCA AAATATTGAG
ATTCCTATAT TACTGGTTGG GCACTCTATT GGTTCATACA TATCTATTGA AATGTTCAAG AAGTCTCCAG AGAAGGTGAA
ATATTGTATT GGACTTTATC CATTTTTGAC GTTAAATCCG CAATCAACAA AACAGTTGTT AATTGGAAAA ATTGCAAAAT
CCCAAGTTCT AGCTGCTGCT CTTAGTTACC TGATAGCATC ATTAGGATGG CTACCTGTCC AAGCTTTAAG GTTCGTGGTC
AGAAAATCCC TTGGGAAGTC ATGGTCAGTC AATGCAGTTG ATGCTGCTTG CTCTCACTTG TCACAGTACC ATACTATGCG
GAATGTTCTG TATATGGCCA TGACAGAATT CAGAAAGCTT TCAGAGGCAC CAGATTGGAC ATTTATGAAA GAAAGGAAGG
CTCAATTGAC GTTTTTATTT GGTATCGACG ACCACTGGGG CCCACTTGAT TTGCTTGAAG AGATTTCAAA GCAGGTTCCC
GGTGTTGCCG TATCTATTGA ACGAGAAAAC CACACCCATG GTTTCTGTTG CACAGAGGCC GGCTCATTAT GGGTTGCTCA
GCATGTGGCA AACTGTATCA AGAAGCAGAC AGCTTGTACA AACCAATGAG GTCTGACTCT CTTGCTGTTC GCTTGTGTTG
TGTGAGTTTT CTATGTTAGT CTCAGAAAGG ACTGAACCAC AAATAAATTT GAAACGATGC TTATAGTGCA TGCTATAAAA
AGTGTAGTTT CTTTCATTCA TCAGTGCTGA TAGTGCATTC AACAGTTTTA ACATCGCCAA CAACTGTATT TTATGACTTA
GTAGTTCCAC CGTCCTCCAG TTGTACAAAG TAAACTATCG CCAACTGCAT TTTGAACCCT CCCTACCCCC TCTTTTCCAA
AAAATTTAGG ACACGTTTCT CAAAAACCTT AGTTTTTATC GTTTATCAAA TTGGTGTCAA GCATCAACTT CCAGAAA

>Vigan.04G351000.01
ATGTTTCCTG GCCTCGGGGG TTGGACTGCT CGATCTTTCG CTCACTCTGT GCTGTTGCCT TCCCTCGCTT CCTCCAGGAC
AAGGTTTAGA GCCAAGTGTT TGGTTAATTG CAGCATGACG GTGAACGATA ACTTGCTTTC CAAACCTATA AGGCGTGCTA
ATTTTCGATT ATGCAATGTT TCAGGTTACA TTTCTGAAGT ATTGGAGATT CGGGCTGAGG CTCCTAAACT GCATGTTCTG
CTTGTTCCTG GAAACCCAGG TGTTGTTTTA TTCTACAAGG ACTTTGTGGA ATTTCTATAT GAGCTGCTGG AGGGAACTGC
GTCTGTGACT GCTATCGGCC ATGTTTCTCA CTCAAGAAAG GACTTGGAAC ATGGACGCAT GTTTTCTTTA CAAGAACAAA
TTGATCACAA GATTGACTTC ATCATACAGG AGTTGCAAAA TATTGAGATT CCTATATTAC TGGTTGGGCA CTCTATTGGT
TCATACATAT CTATTGAAAT GTTCAAGAAG TCTCCAGAGA AGGTGAAATA TTGTATTGGA CTTTATCCAT TTTTGACGTT
AAATCCGCAA TCAACAAAAC AGTTGTTAAT TGGAAAAATT GCAAAATCCC AAGTTCTAGC TGCTGCTCTT AGTTACCTGA
TAGCATCATT AGGATGGCTA CCTGTCCAAG CTTTAAGGTT CGTGGTCAGA AAATCCCTTG GGAAGTCATG GTCAGTCAAT
GCAGTTGATG CTGCTTGCTC TCACTTGTCA CAGTACCATA CTATGCGGAA TGTTCTGTAT ATGGCCATGA CAGAATTCAG
AAAGCTTTCA GAGGCACCAG ATTGGACATT TATGAAAGAA AGGAAGGCTC AATTGACGTT TTTATTTGGT ATCGACGACC
ACTGGGGCCC ACTTGATTTG CTTGAAGAGA TTTCAAAGCA GGTTCCCGGT GTTGCCGTAT CTATTGAACG AGAAAACCAC
ACCCATGGTT TCTGTTGCAC AGAGGCCGGC TCATTATGGG TTGCTCAGCA TGTGGCAAAC TGTATCAAGA AGCAGACAGC
TTGTACAAAC CAATGA

>Vigan.04G351000.01
MFPGLGGWTA RSFAHSVLLP SLASSRTRFR AKCLVNCSMT VNDNLLSKPI RRANFRLCNV SGYISEVLEI RAEAPKLHVL
LVPGNPGVVL FYKDFVEFLY ELLEGTASVT AIGHVSHSRK DLEHGRMFSL QEQIDHKIDF IIQELQNIEI PILLVGHSIG
SYISIEMFKK SPEKVKYCIG LYPFLTLNPQ STKQLLIGKI AKSQVLAAAL SYLIASLGWL PVQALRFVVR KSLGKSWSVN
AVDAACSHLS QYHTMRNVLY MAMTEFRKLS EAPDWTFMKE RKAQLTFLFG IDDHWGPLDL LEEISKQVPG VAVSIERENH
THGFCCTEAG SLWVAQHVAN CIKKQTACTN Q*