GBrowse Details

Vigan.04G334200.01

Basic Information:
Name: Vigan.04G334200.01
Multiple alignment
Variant Information
Position: Chr04:45615719..45619917 (+ strand)
Length: 4199
Functional Information:
Description: Similar to triosephosphate isomerase, chloroplastic. [XP_003554399.1, Glycine max]
GO: Biological Process: glycolysis (GO:0006096)
Biological Process: metabolic process (GO:0008152)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: triose-phosphate isomerase activity (GO:0004807)
InterPro: Triosephosphate isomerase (IPR000652)
Aldolase-type TIM barrel (IPR013785)
Triosephosphate isomerase, active site (IPR020861)
Triosephosphate isomerase, bacterial/eukaryotic (IPR022896)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:249.45,187.90,107.52,288.82,174.85,197.14,72.79,85.02
Arabidopsis thaliana homolog: AT2G21170.1
Automatic updates:
Name: NM_001253966 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max triosephosphate isomerase, chloroplastic-like (LOC100799358), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:45615719..45615999 (+ strand)
Length: 281
Type: five_prime_UTR
Position: Chr04:45616000..45616176 (+ strand)
Length: 177
Type: CDS
Position: Chr04:45616443..45616469 (+ strand)
Length: 27
Type: CDS
Position: Chr04:45617292..45617361 (+ strand)
Length: 70
Type: CDS
Position: Chr04:45618007..45618130 (+ strand)
Length: 124
Type: CDS
Position: Chr04:45618367..45618451 (+ strand)
Length: 85
Type: CDS
Position: Chr04:45618563..45618695 (+ strand)
Length: 133
Type: CDS
Position: Chr04:45618794..45618967 (+ strand)
Length: 174
Type: CDS
Position: Chr04:45619300..45619382 (+ strand)
Length: 83
Type: CDS
Position: Chr04:45619479..45619535 (+ strand)
Length: 57
Type: CDS
Position: Chr04:45619536..45619917 (+ strand)
Length: 382
Type: three_prime_UTR

>Vigan.04G334200.01 class=Sequence position=Chr04:45615719..45619917 (+ strand)
TATTGTTCCT GGACATGATT ACTCTGCTAT GTTCATGTGT AGGGACCACA TAGTTGAACT CAGCAATTCA AGAACCAAGA
AAACCATGGC CTTCTTAAGT TACTTGTTTA ACTTGGTAGG TGCGTATTAA ATAGTAAAAC AGTAAAAAGT AACACACTCT
CTCACCAACC AACACCAAAC TACAAAACCA AAATCTAATC CAAACCTTAA AATTTACTAC TAGTTTCGCA CTCACCTCAA
CCGCAACCCA ACACTGTTCT TGTTCTTCAT CTTCTTCTTC CATGGCAGCA ACCTCAACAT CACTGGCTTC TCAACTCTAC
ATTGGCCTGC GCCGCCCCTG CCCCAAGCTC GATTCTTTCA ATTCTCCGTC TTTTTCTGCC TTCGACCCTA ATCTTCGCCT
CTCCCTCTCT CCTCCCAAAC CCTCACGCGC CGTTGTCGCC ATGGCCGGCT CTGGCAAGGT GCTTTTGCTT CTTCTTTTAT
TCTTTTTAAA AACTTCAAAT TTATTATTCT TTTATTACCC TTGATCGTTA AATAAAACTC GTCTCTTTGA TTTCGGTGGG
TAATACATTT CTCTTCTATG GGTTGGGTTT GCGCAATTCC ATCGAAGCCT GTTAGCATCC ATGCATTATT GGTTATATAT
TGCTTTATCT TTAGTGGTTG GTTATCCATT TGCCATTTGC CATTTGGTGT ATTGATCTTT TTCTTCCTTT CTTCGTTGTT
GCAGTTCTTC GTTGGGGGCA ACTGGAAGTG TGTAAGTATC TTTCCCCCAA ACTGTTTTTG TTGCTATTTT TGTTAAAATG
CTATGTTGAT TTTTTGTGAT TCAGTACTTG AGTAGTTGAT TGATGTTATA TTTTATTTTA GCATTAGAGT GGTATAACAG
CACACTATTG GAATGCAAAT TATGCGCCAT AAATCTCGGA CTATGTTTTG GTTTTGAGTA AATAACCTAT ACTTTTCCTT
GTAAGTATTG AGCTTAATGT TTTTGGATTA TGCATCTGGT TCAACTCACC ACACTTTGCA ACTTACGTCC CCTGACTTGA
CTTTTTTCTG TAGCTAGCAG TAGCAGTTTA GAGCTTGTTT TCAACCCTTT GTTCAAACTT TCTTTTAATT TTTTTTAGCA
CTAGTATCCT GGAGCCATTT CTTTCCATCT GCCATACCGT TCTTATAAAG AATGCACTCT ACATTAAAGG ACTAAAGGAA
CTCTTTCTTT CCTCTTGATC ACTTTGTAGA GCAGCACAGG TTTATCTTAA ATTAAACTAA ATAAAAAAAA AATACAGTTT
TCTTGTGATA TCATATCTAT CTTTCAGAAG AATTTCCTTC ATACTTCATC AATTATCCCT TGGACCTATT TATTTGTGTA
ATATAATGAA CTTATATTCT CTTGCAGTTC TACCAGGTTA TTTGAAACAG GTCCTTTTTG CATTGTTCAG TAGTTTTTGT
TCTTTTGTTG TATGTGATAA ACCACTCATA AGTACACATG AATCATTGGT TCTCACGGTT CAATCAATTA CTAGTTCAGT
AAACTCTGCA TATATCTCTA TCTGATTTTT AGTACTTTTT CTGTTTTCTT TAGAACGGAA CAAAAGATTC CATCAGTAAG
CTTGTCGCTG ACTTGAACAG TGCAAAATTG GAGCCCGATG TTGGTGAGAT GTGTTCAATC TTTATTTGTG TTTCTTGCTA
AAAGATGTAG AAGACTATAA ATAATTGTTA TGCTTCTTCC CTACTCCTAA AACCTAAAAT AATTCGTTGA GTTTGAACAT
TTTTTTCTCT GTATGCTAGT GCAATGACAC ATTTGGTGTT TGGTTACAAA ATGCTGATAA ATGATGATAT ATTTTCTGGT
TGGAAATGAT CAAATTAATT GTTTCAAAAG GAAATGGATA TAGTTCTCGA TTATCCATTC CCAGTACCAA AAAGTGGCAA
AACGCATGGA ACCCCATTCC AACCATGGGT CATTTGCAGA GAACTCCCTT GTACTTTGGA ACTCACCAAC ATGATTCATC
GAACTTACCA AACTATACAT AATGACTCCT CATAGGGGGT TTTGGGCACA TGCCCAATAA GGTCAATATA CACTATTTGT
TTGGCATGTG CTGTGTGTGT TGGTGTGTTT GAAAGCTTAA GTAAATTTGC AAGCTATGAT CCACAATTGG AGAGGTTCCT
TGTTTTCTGG TCCCTCAAAA AATTGTATTG AGTATGTGAT TCAAGTTAAA AAAACTCTTT CTTAATAACC TTGAAAAGTT
ATCATTTGCA TTTGGTCATC ACAAGCATTT CCATTTTGAG ATGTACAGAT GTCGTTGTTG CACCTCCCTT TCTGTACATC
GATCAAGTGA AAAGCTCACT TACAGACCGG ATTGAAATAT CTGCCCAGAA TTCTTGGGTT GGTAAAGGTG GTGCTTTCAC
TGGAGAAATC AGGTTAGCTT GCTCTTTCCT GCCAAATGTT AATTAATCCA GGTTTTCATT TTGTTTTTTG AATTATAAAT
TTTGGCAAGT TGGATGATTG CAGATACTAT TTCTTTTATG TTCACAGTGT CCTTCATGCT GTTTTCGATG CAATTCCAAT
GTTTAAACCA AATATGTTAT TGTTTTCTGG TTATCCTCAA TTATGCTACA AGTTAATTCA GTTAGTTATT AAAACATGAC
TTTTGTAGTG CTGAACAAGT GAAAGATATT GGATGCAAGT GGGTTGTTCT TGGACATTCT GAGCGAAGAC ATATTATTGG
AGAAAATGAT GAGGTAAAGC AAATTCAGAA ATCATTGATA CAGCATTCTT GCCAGAGAAT ACTACCAGTA TATTTGCAAG
AGATGATAAT ATTTTAGATA TTAACCGAAC ATTGTCCACT GCAGTTTATA GGAAAGAAAG CTGCCTATGC TTTGAACCAG
GGTCTTGGAG TGATTGCATG CATAGGAGAA TTGTTAGAAG AAAGGGAAGC AGGGAGAACT TTTGATGTTT GCTTTCAACA
ATTGAAGGCT TATGCTGGTA TAATCCATTT AAAATCGTTT TTTTTTGGGG GGAAAAACAA AAGGGGGGAG GGGTTTCTGA
TTGCCAGCAT AAAATTCATT GTCGCTTTTA TGCAGATGCT GTTCCTAGTT GGGACAATAT TGTTATTGCA TATGAACCTG
TATGGGCCAT TGGAACTGGC AAAGTGGCCA CTCCCCAGCA GGCTCAGGAA GTACATGTAG CTCTTCGGGA TTGGCTGAAA
AAGAATGTCT CAGATGAAGT TGCATCTAAA ACACGAATTA TTTATGGAGG TAAATCTTTT GTTGTACCTG TAGTTGCATT
GTGAACTTTT GGCAGTGTTA CGGAAATTTA ACATATACCA TGATTTAATA AGGCTGCATG TTTATTCAAT GTAACTTTGC
AACATCTGAA CTTTCTTATG ATGCATTATT TAAGAACATA GCAGAATCAT GTATTTTCAC AATCAATGAA CTGCTTGCCA
TATAGTGATA GCTGATATAC TTGATAGGTG TAAAGCTGTG CACAACATAT CTTGTTAACA TTAAGATTGT CCCTGACCTT
GTCTATGCAA AATGTTGGTT TAGTTTCAGC ATATTTGAAT ATAAAATTGA TCTGTTTTCA GGGTCTGTAA ATGGAGGGAA
CAGTGCTGAG CTGGCAAAGC AAGAGGATAT CGATGGATTT CTCGTTGGAG GTGCTTCATT GAAGGTACAT ACATAGTTTG
TTTGAGCAAA GTAATCATAG CATAAGATAA GGAATTGAGG TTATTATTTA TACTTACAAG TTGATGTTGT TGAGCTGCAG
GGTCCTGAGT TTGCTACCAT TGTGAATTCA GTCACATCCA AGAAAGTTGC GGCTTGATTA CTTATTGTAG TTTGGGCAAT
ATGAGAGGGC AATTCTCAAA TGTGGCAATA AATAATATGG GTCTATTATA ATAATAGCAC TTTGCTTTTG TCATCCTGAG
TTTTTCCAAA GAGCCAGTAT TTTCTTTCGA TTAGAGATAC AGAGAGGCAA TAAATTTTAA ATGTTTCTGA ATTATTGTTG
TTTTCTCATA ACGTCACTGT TAAATCTTGA ATTTTATTTT CTTTTTATGG TCGCTCTCAG TGATGTGGTC TGGACTTTTG
TGACTCGAAA TGTGCCTTCA TAAGTTCACT TTCTGCGTAT TGTGATGAAG CTTAACATAC TTTTTAGATT AAACTTATTT
ATCGTCCAAT CGAACAATTC AGATAGTTAT ATGAGAAGA

>Vigan.04G334200.01
TATTGTTCCT GGACATGATT ACTCTGCTAT GTTCATGTGT AGGGACCACA TAGTTGAACT CAGCAATTCA AGAACCAAGA
AAACCATGGC CTTCTTAAGT TACTTGTTTA ACTTGGTAGG TGCGTATTAA ATAGTAAAAC AGTAAAAAGT AACACACTCT
CTCACCAACC AACACCAAAC TACAAAACCA AAATCTAATC CAAACCTTAA AATTTACTAC TAGTTTCGCA CTCACCTCAA
CCGCAACCCA ACACTGTTCT TGTTCTTCAT CTTCTTCTTC CATGGCAGCA ACCTCAACAT CACTGGCTTC TCAACTCTAC
ATTGGCCTGC GCCGCCCCTG CCCCAAGCTC GATTCTTTCA ATTCTCCGTC TTTTTCTGCC TTCGACCCTA ATCTTCGCCT
CTCCCTCTCT CCTCCCAAAC CCTCACGCGC CGTTGTCGCC ATGGCCGGCT CTGGCAAGTT CTTCGTTGGG GGCAACTGGA
AGTGTAACGG AACAAAAGAT TCCATCAGTA AGCTTGTCGC TGACTTGAAC AGTGCAAAAT TGGAGCCCGA TGTTGATGTC
GTTGTTGCAC CTCCCTTTCT GTACATCGAT CAAGTGAAAA GCTCACTTAC AGACCGGATT GAAATATCTG CCCAGAATTC
TTGGGTTGGT AAAGGTGGTG CTTTCACTGG AGAAATCAGT GCTGAACAAG TGAAAGATAT TGGATGCAAG TGGGTTGTTC
TTGGACATTC TGAGCGAAGA CATATTATTG GAGAAAATGA TGAGTTTATA GGAAAGAAAG CTGCCTATGC TTTGAACCAG
GGTCTTGGAG TGATTGCATG CATAGGAGAA TTGTTAGAAG AAAGGGAAGC AGGGAGAACT TTTGATGTTT GCTTTCAACA
ATTGAAGGCT TATGCTGATG CTGTTCCTAG TTGGGACAAT ATTGTTATTG CATATGAACC TGTATGGGCC ATTGGAACTG
GCAAAGTGGC CACTCCCCAG CAGGCTCAGG AAGTACATGT AGCTCTTCGG GATTGGCTGA AAAAGAATGT CTCAGATGAA
GTTGCATCTA AAACACGAAT TATTTATGGA GGGTCTGTAA ATGGAGGGAA CAGTGCTGAG CTGGCAAAGC AAGAGGATAT
CGATGGATTT CTCGTTGGAG GTGCTTCATT GAAGGGTCCT GAGTTTGCTA CCATTGTGAA TTCAGTCACA TCCAAGAAAG
TTGCGGCTTG ATTACTTATT GTAGTTTGGG CAATATGAGA GGGCAATTCT CAAATGTGGC AATAAATAAT ATGGGTCTAT
TATAATAATA GCACTTTGCT TTTGTCATCC TGAGTTTTTC CAAAGAGCCA GTATTTTCTT TCGATTAGAG ATACAGAGAG
GCAATAAATT TTAAATGTTT CTGAATTATT GTTGTTTTCT CATAACGTCA CTGTTAAATC TTGAATTTTA TTTTCTTTTT
ATGGTCGCTC TCAGTGATGT GGTCTGGACT TTTGTGACTC GAAATGTGCC TTCATAAGTT CACTTTCTGC GTATTGTGAT
GAAGCTTAAC ATACTTTTTA GATTAAACTT ATTTATCGTC CAATCGAACA ATTCAGATAG TTATATGAGA AGA

>Vigan.04G334200.01
ATGGCAGCAA CCTCAACATC ACTGGCTTCT CAACTCTACA TTGGCCTGCG CCGCCCCTGC CCCAAGCTCG ATTCTTTCAA
TTCTCCGTCT TTTTCTGCCT TCGACCCTAA TCTTCGCCTC TCCCTCTCTC CTCCCAAACC CTCACGCGCC GTTGTCGCCA
TGGCCGGCTC TGGCAAGTTC TTCGTTGGGG GCAACTGGAA GTGTAACGGA ACAAAAGATT CCATCAGTAA GCTTGTCGCT
GACTTGAACA GTGCAAAATT GGAGCCCGAT GTTGATGTCG TTGTTGCACC TCCCTTTCTG TACATCGATC AAGTGAAAAG
CTCACTTACA GACCGGATTG AAATATCTGC CCAGAATTCT TGGGTTGGTA AAGGTGGTGC TTTCACTGGA GAAATCAGTG
CTGAACAAGT GAAAGATATT GGATGCAAGT GGGTTGTTCT TGGACATTCT GAGCGAAGAC ATATTATTGG AGAAAATGAT
GAGTTTATAG GAAAGAAAGC TGCCTATGCT TTGAACCAGG GTCTTGGAGT GATTGCATGC ATAGGAGAAT TGTTAGAAGA
AAGGGAAGCA GGGAGAACTT TTGATGTTTG CTTTCAACAA TTGAAGGCTT ATGCTGATGC TGTTCCTAGT TGGGACAATA
TTGTTATTGC ATATGAACCT GTATGGGCCA TTGGAACTGG CAAAGTGGCC ACTCCCCAGC AGGCTCAGGA AGTACATGTA
GCTCTTCGGG ATTGGCTGAA AAAGAATGTC TCAGATGAAG TTGCATCTAA AACACGAATT ATTTATGGAG GGTCTGTAAA
TGGAGGGAAC AGTGCTGAGC TGGCAAAGCA AGAGGATATC GATGGATTTC TCGTTGGAGG TGCTTCATTG AAGGGTCCTG
AGTTTGCTAC CATTGTGAAT TCAGTCACAT CCAAGAAAGT TGCGGCTTGA 

>Vigan.04G334200.01
MAATSTSLAS QLYIGLRRPC PKLDSFNSPS FSAFDPNLRL SLSPPKPSRA VVAMAGSGKF FVGGNWKCNG TKDSISKLVA
DLNSAKLEPD VDVVVAPPFL YIDQVKSSLT DRIEISAQNS WVGKGGAFTG EISAEQVKDI GCKWVVLGHS ERRHIIGEND
EFIGKKAAYA LNQGLGVIAC IGELLEEREA GRTFDVCFQQ LKAYADAVPS WDNIVIAYEP VWAIGTGKVA TPQQAQEVHV
ALRDWLKKNV SDEVASKTRI IYGGSVNGGN SAELAKQEDI DGFLVGGASL KGPEFATIVN SVTSKKVAA*