GBrowse Details

Vigan.04G333000.01

Basic Information:
Name: Vigan.04G333000.01
Multiple alignment
Variant Information
Position: Chr04:45531620..45534268 (+ strand)
Length: 2649
Functional Information:
Description: Similar to Rhodanese/Cell cycle control phosphatase superfamily protein. [XP_007027444.1, Theobroma cacao]
InterPro: Rhodanese-like domain (IPR001763)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:50.29,37.95,32.34,49.61,63.55,83.11,73.61,33.40
Arabidopsis thaliana homolog: AT5G03455.1
Automatic updates:
Name: NM_001249788 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305790 (LOC100305790), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:45531620..45531718 (+ strand)
Length: 99
Type: five_prime_UTR
Position: Chr04:45531719..45531831 (+ strand)
Length: 113
Type: CDS
Position: Chr04:45531926..45532064 (+ strand)
Length: 139
Type: CDS
Position: Chr04:45533691..45533864 (+ strand)
Length: 174
Type: CDS
Position: Chr04:45533865..45534268 (+ strand)
Length: 404
Type: three_prime_UTR

>Vigan.04G333000.01 class=Sequence position=Chr04:45531620..45534268 (+ strand)
AAAAAAAAAA CAAAAAACAA AGAAGACGTG CACAGAACTA GGTAAAAAAA AAAACGGGAA ATTGGGTTGG TGCGTGTGGA
AATTTGAGTT AAATTTGAAA TGAGAAGAGT GGAGAGGCGA TACGAGATTA TGGCTCGCAG TATATCGTAC ATTACAGGCA
CACAACTTCT CTCTCTCAGA CGCCATCCAA GCATCGCCAT CGTCGATGTC AGGTACCATT ATCTATGTTT TACTATCTGC
TAATTGCTTC CTCTTTTCAT CAATTGGCTC TGTTCAAAAC CTTATTATTT ACTCCTTATT GTTTAGGGAC GATGAGAGGG
GTTACGATGG ACACATATCG GGGTCTCTTC ATTACGCAAG CGATACTTTC TCCGATAACA TTTCAAACCT CGTTCAGGCG
GTTAAAGGCA AAGATACCGT CGTCTTCCAC TGCGCTCTAA GCCAGGTTCT CTCTCTCTCT TTAATTATTT ATTATACTCT
TTTCTGCTTC TTCGATTTGT GTTATTCCAA TTCCAGTGAT CCAATCCCGA TCCTTCTGTC CATTGGGTGT ATTGGTGTAA
CGATGTGACT GAAATTTTTA GGAATCTGGA TTTTTTTTTT CTTTTTGATT TACTACAGGA GTTGGACTTT GTCAAATCTA
AAGGGCTGTT TCTTGCGTGT GTAGTGTGTA AAATCGTGCG TCTAACAATG TTAGACTTCT GGGCAAGTTG GTTTTGTGGA
CATTTGATTG CATCGATCAT GTGCTGAAAA TTGTCATCTG TCATACTTTA GCCCAAACTT GAGGGAAATA TTTTATATTT
TGTCAGTGGG AAGTCGGAGG TGGTGGAATA CGGTTTTCAT TATCACATGG CAGTGTTTTA CCCTGCTTCT CACTGGTTCT
CTCTAGGCAC AAATCATGAC GATAAGAATT CCTGTTGTGA GCATCTCCGC TTTGTGAGAG GCATTGTTCT TCATTTTGGG
GTTTGTTTTC TCAGGTTTGT AGCTGCTGTG TCCTTAGATG TCAACTTTTA TTTTAGTTGG CTTTGCAATC ATTATTGGTT
TATAACTGAA TTTTCTTATT TGTTGTAGTC AAATAAACGC GAACTGGCAC AGAGTTAGGG ACCAAGGTCC GTGCATGTAT
CAGTTAATAG ATGATATGAA GCATTAGGTC AAGAGTAGGG AAAGTGTATT CCAAGAAAAA GAAGAAAGAT TAGAGATTTG
GTTAGTTAGT CATTTATGAT GAGCTGCCAG TTGTTAGTAG TTAATGGGCT GACCAAATAA AAAGAGAAGC TGTAAACAGA
AGAGGGGGAG AAAAACTGTT GTAAGGCTGA GAGACAATCT CCAAAGGACC TCTTGGCTCT GGTTCTTTGT AACAATTATT
GATAGTGAAT GATACTCCTC TCTTCTTTAA TTCTTTTGGG TTTGGTCAAA TATTCTGTTC TTTTCGTTTT GTTGGTTGGT
TCGTTTTTCC TAACATAGTA GTTTGATGCA AAGTAAGTGT TTCAGAAGGG AAGGGATTTG GCTAAAAGAA AGTCAATATT
GAGTAAAGGC AGCAGTTTGA GACGAAAGAC CTGCAGCTAT TTGAGGGGAC AAAAATCCTT TAGAAAGAAA AATAAGGAAT
CGAATTTTGC AGTATTGTCT TTTGACTGTT TTTACCGTCT TCCATTGGCC ATGCCAAAGT GTGTCACTAA ATATGCTATA
ACTGGTTCCT TTTCTGAGGA TGATCTATTC ATATAGAGTT GCAATCTACA TAATTGATTG ATTAGCTTCT TATATGCATA
TGCTGATTTA CTCAGATTAT TTTTTGCTTT CATATTACCC GTGCCTTTTC AGAATTTAAT ACCTGACGCA GTTGATATTT
AACTCTTGTG TCAAAGCTTC TTCGTTTGAG TTGGTTCCAA GATACAATGG ATAAGGCAGA CATTACATTT TTACATATAA
CTTCGTAGTT ACATCGTAAA ACCTACATGT CAGAAACAAG TTTCATAGAA TTTGACAATT TTTTTGTAAG GGGGCGTGTC
TTCCTATTCT CTTTTTGTAC AATACAAGAA TGTTTCTCTC TAGACTGAAC ATGTCGTAAG CTATTTTGTA GGTTCGTGGC
CCAACTTGTG CTAGGAGGCT TGTCAATTAT CTCGAGGAGA ACAAGGAAGA TACAGGGATA AAGAACATTA TGGTGTTGGA
ACGTGGCTTC AATGGGTGGG AAGCTTCTGG TAGACCTGTT TGCCGCTGCA CTAATATTCC TTGCAAAGGA GAGTGTGAGC
CTTAATCAAA GTCGCGTTTG CGGTTGCATG GAATCAAGGA GGCATATGAA ATTTGTTGTG GGTGCACGCA TTTGTATACA
AAATGTAAAA ACAGTTGGAT GACCGCTATG ATTGCATCAT TATATCTTGG TAGAATCCTA TATATCATCA TAGGTAAACT
GAATACCGTG TTTCTGTTTT GTCCATCACT TAATATGTAA CAAAATCCTA CTATGAGAAT TGCTAAGAAT AACCAAGGTA
CTTCTTTTCT TTGTGAACTT TCCTAATGTA TTGCATAACA ATGATTGAGG GGATTCTACT TTGGCAATTT TCATGGGCTA
GTCGTAGTGA AGACTTGGGA ATTCCCTGAA ACTCAATTAA AGTTGTCCGT AACAAGTTTG CTAAAATGAA ATTGGATGTG
CTTAACGGC

>Vigan.04G333000.01
AAAAAAAAAA CAAAAAACAA AGAAGACGTG CACAGAACTA GGTAAAAAAA AAAACGGGAA ATTGGGTTGG TGCGTGTGGA
AATTTGAGTT AAATTTGAAA TGAGAAGAGT GGAGAGGCGA TACGAGATTA TGGCTCGCAG TATATCGTAC ATTACAGGCA
CACAACTTCT CTCTCTCAGA CGCCATCCAA GCATCGCCAT CGTCGATGTC AGGGACGATG AGAGGGGTTA CGATGGACAC
ATATCGGGGT CTCTTCATTA CGCAAGCGAT ACTTTCTCCG ATAACATTTC AAACCTCGTT CAGGCGGTTA AAGGCAAAGA
TACCGTCGTC TTCCACTGCG CTCTAAGCCA GGTTCGTGGC CCAACTTGTG CTAGGAGGCT TGTCAATTAT CTCGAGGAGA
ACAAGGAAGA TACAGGGATA AAGAACATTA TGGTGTTGGA ACGTGGCTTC AATGGGTGGG AAGCTTCTGG TAGACCTGTT
TGCCGCTGCA CTAATATTCC TTGCAAAGGA GAGTGTGAGC CTTAATCAAA GTCGCGTTTG CGGTTGCATG GAATCAAGGA
GGCATATGAA ATTTGTTGTG GGTGCACGCA TTTGTATACA AAATGTAAAA ACAGTTGGAT GACCGCTATG ATTGCATCAT
TATATCTTGG TAGAATCCTA TATATCATCA TAGGTAAACT GAATACCGTG TTTCTGTTTT GTCCATCACT TAATATGTAA
CAAAATCCTA CTATGAGAAT TGCTAAGAAT AACCAAGGTA CTTCTTTTCT TTGTGAACTT TCCTAATGTA TTGCATAACA
ATGATTGAGG GGATTCTACT TTGGCAATTT TCATGGGCTA GTCGTAGTGA AGACTTGGGA ATTCCCTGAA ACTCAATTAA
AGTTGTCCGT AACAAGTTTG CTAAAATGAA ATTGGATGTG CTTAACGGC

>Vigan.04G333000.01
ATGAGAAGAG TGGAGAGGCG ATACGAGATT ATGGCTCGCA GTATATCGTA CATTACAGGC ACACAACTTC TCTCTCTCAG
ACGCCATCCA AGCATCGCCA TCGTCGATGT CAGGGACGAT GAGAGGGGTT ACGATGGACA CATATCGGGG TCTCTTCATT
ACGCAAGCGA TACTTTCTCC GATAACATTT CAAACCTCGT TCAGGCGGTT AAAGGCAAAG ATACCGTCGT CTTCCACTGC
GCTCTAAGCC AGGTTCGTGG CCCAACTTGT GCTAGGAGGC TTGTCAATTA TCTCGAGGAG AACAAGGAAG ATACAGGGAT
AAAGAACATT ATGGTGTTGG AACGTGGCTT CAATGGGTGG GAAGCTTCTG GTAGACCTGT TTGCCGCTGC ACTAATATTC
CTTGCAAAGG AGAGTGTGAG CCTTAA

>Vigan.04G333000.01
MRRVERRYEI MARSISYITG TQLLSLRRHP SIAIVDVRDD ERGYDGHISG SLHYASDTFS DNISNLVQAV KGKDTVVFHC
ALSQVRGPTC ARRLVNYLEE NKEDTGIKNI MVLERGFNGW EASGRPVCRC TNIPCKGECE P*