GBrowse Details

Vigan.04G329700.01

Basic Information:
Name: Vigan.04G329700.01
Multiple alignment
Variant Information
Position: Chr04:45196484..45199654 (+ strand)
Length: 3171
Functional Information:
Description: Similar to Phenylalanine ammonia-lyase. [U3U7R4, Vigna radiata]
GO: Biological Process: L-phenylalanine catabolic process (GO:0006559)
Biological Process: biosynthetic process (GO:0009058)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: ammonia-lyase activity (GO:0016841)
InterPro: Aromatic amino acid lyase (IPR001106)
Phenylalanine ammonia-lyase (IPR005922)
L-Aspartase-like (IPR008948)
Phenylalanine/histidine ammonia-lyases, active site (IPR022313)
Phenylalanine ammonia-lyase, shielding domain (IPR023144)
Fumarase/histidase, N-terminal (IPR024083)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.34,0.01,4.47,2.76,11.56,7.60,42.47,3.50
Arabidopsis thaliana homolog: AT2G37040.1, AT3G10340.1, AT3G53260.1, AT5G04230.2
Automatic updates:
Name: NM_001357058 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phenylalanine ammonia-lyase 1 (PAL1.3), mRNA.
PubMed ID: 28775360 NCBI(pubmed)
27411159 NCBI(pubmed)
18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:45196484..45196611 (+ strand)
Length: 128
Type: five_prime_UTR
Position: Chr04:45196612..45197009 (+ strand)
Length: 398
Type: CDS
Position: Chr04:45197701..45199450 (+ strand)
Length: 1750
Type: CDS
Position: Chr04:45199451..45199654 (+ strand)
Length: 204
Type: three_prime_UTR

>Vigan.04G329700.01 class=Sequence position=Chr04:45196484..45199654 (+ strand)
CCTCAAACTC ATAAACACAC ACATTTCCTC TCTTTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
TCTCTACAAA ACTCATCTCC ATTTTTTCAT TCTCTTCACT GTTTTAAGAT GGAAGCAACT ACCCTCACCA ACGGCAACCA
AAACGGTTCC TTCTGCTTGA CTTCCACCAA GAGCAGTGAT CCTCTCAATT GGGGAACGGC CGCCGAGGCG CTCAAGGGGA
GCCACCTCGA TGAGGTCAAG CGCATGGTGG CCGAATACCG TCAGCCGCTG GTCCGCCTCG GTGGCGAGAC GCTCACCATC
GCTCAGGTGG CGGCGGTGTC TGCACACGAC CAAGGCGTGA GGGTGGAGCT GTCGGAGTCC GCTCGGGAAG GTGTTAAGGC
GAGCAGTGAC TGGGTGATGA ACAGCATGAA CAATGGCACT GACAGTTACG GCGTCACCAC CGGCTTCGGT GCCACCTCAC
ACCGCCGAAC CAAACAAGGT GGTGCACTTC AGAAAGAACT CATCAGGTAA CTAACTCTAC TCTACTCCCT CTGTGTATAT
ATATAAAACA CACACAAACA CAAACTCTAC GTATATATAC GCTTACTATA CGTACTATTT TCCTTGTTTT CAATATTTCA
TGTGTCCGGT GCTGATTACT GAGCACGGTA CTTACCTAAA TTTAACAGCA TAAAAAATTT ACTACCATAC CATCTGATCG
TCTTTTATAT ATATTCATTC AAAGACATGC ATGATCAAGG TTCTCCTTCT AAAATATTGC GAACCAATTC TGAACTACGT
GAACTGTTTT ATAATTTTTT TTTTCTATTT CTAAACTGTA ATTACATTTT TTATGACCTA ATATTAGCTT GGAAAAAAAA
ATTGTCTTTA ATTTTTTTGG TTTTTATATA ATGTATATTT TTAACAATAA TGCATGGAAA ATAATTTTTA TTTTAAGCTG
GACGGCTTTA AAGAAATTTC TTACATACCT AACTCAACCT TATATGTAAT TTTATTTTTC AACATTATAT ATTTAGCGTA
GATATATTTT GCTATGTTCA TATTAAATTT CCGTTTTTAA TTATGTAAAT AGGATGAAAA CATTTTTCTT GTGTTTTCTA
ATAATTACTG AAACATATAT GCTTTCATTA AGGTGGATCA ATTTTATTAT TAATTTAAAA CAGGAATTCC TAATTATGAT
TGTTTATTTC TTTTCAGGTT TTTAAACGCT GGAATATTTG GAAATGGGAC TGAATCATGC CACACACTGC CACACACAGC
AACTAGAGCA GCCATGCTAG TGAGGATCAA CACTCTTCTT CAAGGCTACT CAGGCATCAG ATTTGAAATC TTAGAAGCAA
TCACCAAGCT CCTTAACAAC AACGTTACCC CATGTTTGCC ACTTCGTGGT ACAATCACGG CTTCTGGAGA TCTTGTTCCA
CTTTCCTATA TTGCTGGTTT GCTAACTGGC AGACCTAACT CCAAAGCTGT TGGATCTTCT GGAGAAGTAC TTAATGCCAA
GCAAGCTTTT GAATCGGCTA ACATCAATTC TGCCTTCTTT GAATTGCAAC CCAAGGAAGG CCTTGCCCTC GTTAATGGCA
CGGCTGTCGG TTCTGGCTTA GCTTCTATTG TTCTCTTTGA TGCAAATATA CTGGCTGTGT TGTCTGAAGT TCTATCAGCC
ATTTTTGCCG AAGTGATGCA AGGGAAGCCT GAGTTCACTG ATCATTTGAC ACACAAGTTA AAGCACCATC CTGGTCAAAT
TGAGGCTGCT GCCATCATGG AGCACATTTT GGATGGAAGT TCCTACATGA AGGATGCCAA GAAACTGCAC GAAATAGATC
CTTTGCAAAA GCCAAAACAA GATAGATATG CCCTCAGAAC TTCACCACAG TGGCTTGGTC CTCTCATTGA AGTGATTCGT
TTCTCCACCA AGTCAATTGA GAGAGAGATT AACTCTGTGA ATGACAACCC TCTTATTGAT GTCTCAAGGA ACAAGGCACT
GCATGGTGGT AATTTCCAAG GAACTCCAAT CGGAGTCTCC ATGGACAACA CACGTTTGGC TCTTGCATCT ATTGGAAAAC
TCATGTTTGC TCAATTCTCC GAGCTTGTCA ACGATTTTTA CAACAACGGT CTGCCTTCGA ATCTCACTGC TAGCAGAAAT
CCTAGCTTGG ATTATGGTTT CAAGGGAGCT GAAATTGCCA TGGCTTCCTA TTGCTCTGAA CTTCAGTATC TCGCAAATCC
AGTAACAAGC CATGTCCAAA GTGCTGAGCA ACACAACCAA GACGTGAACT CTCTCGGTCT GATTTCGTCC AGGAAGACAA
ATGAATCTAT TGAGATCCTT AAGCTCATGT CTTCCACCTT CTTGATGGCA CTTTGCCAAG CAATTGACTT GAGGCATTTG
GAGGAGAATT TGAAAAGCTC GGTCAAGAAC ACTGTCAGTC AAGTTTCCAA GAGGACTCTT ACCACAGGTG GCAACGGAGA
ACTCCACCCT TCAAGATTTT GCGAAAAGGA TCTACTGAAA GTGGTTGACA GGGAGTATGT ATTTTCCTAC ATAGATGACC
CATGCAGTGC TACATACCCA CTGACGCAAA AACTCAGGCA AGTGCTTGTA GACCATGCCT TGGTAAATGC AGAGAATGAG
AAGGACGTTA ACACATCGAT CTTTCAAAAG ATTGCAATTT TTGAGGAGGA GTTGAAGACC ATCTTGCCAA AGGAGGTTGA
AAGTGCAAGG GCTGCTTATG AGAGTGGGAA AGCTGCAATT CCAAACAAGA TCAAAGAATG CAGATCTTAC CCACTGTACA
AGTTTGTGCG AGAGGAGTTG GGGACTGGGT TGCTAACCGG AGAAAAGGTG AAGTCACCAG GTGAAGAGTT TGACAAATTA
TTCACTGCAA TATGCCAGGG TAAAATCATC GATCCTCTTC TGGAATGCCT TGGAGAGTGG AATGGAGCTC CTCTTCCGAT
ATCTTAATTT TACTGTCACT TTCCTAAATT TGTTAATTTT ATCGTCACTT CTTAAATGTT TTTTCTTTTG TATCTATGTA
ACTCTATGTT TTAAAACTAT GCAATGTAAG TCAGTGTTTT CAAAGTTGGA TTGGTATTCA ATTCAGGTCG AGTATATATG
TCAATGCATC ATCAATTATA TTATTAACTT ATTAATTAAA CTGCGTAAAC G

>Vigan.04G329700.01
CCTCAAACTC ATAAACACAC ACATTTCCTC TCTTTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
TCTCTACAAA ACTCATCTCC ATTTTTTCAT TCTCTTCACT GTTTTAAGAT GGAAGCAACT ACCCTCACCA ACGGCAACCA
AAACGGTTCC TTCTGCTTGA CTTCCACCAA GAGCAGTGAT CCTCTCAATT GGGGAACGGC CGCCGAGGCG CTCAAGGGGA
GCCACCTCGA TGAGGTCAAG CGCATGGTGG CCGAATACCG TCAGCCGCTG GTCCGCCTCG GTGGCGAGAC GCTCACCATC
GCTCAGGTGG CGGCGGTGTC TGCACACGAC CAAGGCGTGA GGGTGGAGCT GTCGGAGTCC GCTCGGGAAG GTGTTAAGGC
GAGCAGTGAC TGGGTGATGA ACAGCATGAA CAATGGCACT GACAGTTACG GCGTCACCAC CGGCTTCGGT GCCACCTCAC
ACCGCCGAAC CAAACAAGGT GGTGCACTTC AGAAAGAACT CATCAGGTTT TTAAACGCTG GAATATTTGG AAATGGGACT
GAATCATGCC ACACACTGCC ACACACAGCA ACTAGAGCAG CCATGCTAGT GAGGATCAAC ACTCTTCTTC AAGGCTACTC
AGGCATCAGA TTTGAAATCT TAGAAGCAAT CACCAAGCTC CTTAACAACA ACGTTACCCC ATGTTTGCCA CTTCGTGGTA
CAATCACGGC TTCTGGAGAT CTTGTTCCAC TTTCCTATAT TGCTGGTTTG CTAACTGGCA GACCTAACTC CAAAGCTGTT
GGATCTTCTG GAGAAGTACT TAATGCCAAG CAAGCTTTTG AATCGGCTAA CATCAATTCT GCCTTCTTTG AATTGCAACC
CAAGGAAGGC CTTGCCCTCG TTAATGGCAC GGCTGTCGGT TCTGGCTTAG CTTCTATTGT TCTCTTTGAT GCAAATATAC
TGGCTGTGTT GTCTGAAGTT CTATCAGCCA TTTTTGCCGA AGTGATGCAA GGGAAGCCTG AGTTCACTGA TCATTTGACA
CACAAGTTAA AGCACCATCC TGGTCAAATT GAGGCTGCTG CCATCATGGA GCACATTTTG GATGGAAGTT CCTACATGAA
GGATGCCAAG AAACTGCACG AAATAGATCC TTTGCAAAAG CCAAAACAAG ATAGATATGC CCTCAGAACT TCACCACAGT
GGCTTGGTCC TCTCATTGAA GTGATTCGTT TCTCCACCAA GTCAATTGAG AGAGAGATTA ACTCTGTGAA TGACAACCCT
CTTATTGATG TCTCAAGGAA CAAGGCACTG CATGGTGGTA ATTTCCAAGG AACTCCAATC GGAGTCTCCA TGGACAACAC
ACGTTTGGCT CTTGCATCTA TTGGAAAACT CATGTTTGCT CAATTCTCCG AGCTTGTCAA CGATTTTTAC AACAACGGTC
TGCCTTCGAA TCTCACTGCT AGCAGAAATC CTAGCTTGGA TTATGGTTTC AAGGGAGCTG AAATTGCCAT GGCTTCCTAT
TGCTCTGAAC TTCAGTATCT CGCAAATCCA GTAACAAGCC ATGTCCAAAG TGCTGAGCAA CACAACCAAG ACGTGAACTC
TCTCGGTCTG ATTTCGTCCA GGAAGACAAA TGAATCTATT GAGATCCTTA AGCTCATGTC TTCCACCTTC TTGATGGCAC
TTTGCCAAGC AATTGACTTG AGGCATTTGG AGGAGAATTT GAAAAGCTCG GTCAAGAACA CTGTCAGTCA AGTTTCCAAG
AGGACTCTTA CCACAGGTGG CAACGGAGAA CTCCACCCTT CAAGATTTTG CGAAAAGGAT CTACTGAAAG TGGTTGACAG
GGAGTATGTA TTTTCCTACA TAGATGACCC ATGCAGTGCT ACATACCCAC TGACGCAAAA ACTCAGGCAA GTGCTTGTAG
ACCATGCCTT GGTAAATGCA GAGAATGAGA AGGACGTTAA CACATCGATC TTTCAAAAGA TTGCAATTTT TGAGGAGGAG
TTGAAGACCA TCTTGCCAAA GGAGGTTGAA AGTGCAAGGG CTGCTTATGA GAGTGGGAAA GCTGCAATTC CAAACAAGAT
CAAAGAATGC AGATCTTACC CACTGTACAA GTTTGTGCGA GAGGAGTTGG GGACTGGGTT GCTAACCGGA GAAAAGGTGA
AGTCACCAGG TGAAGAGTTT GACAAATTAT TCACTGCAAT ATGCCAGGGT AAAATCATCG ATCCTCTTCT GGAATGCCTT
GGAGAGTGGA ATGGAGCTCC TCTTCCGATA TCTTAATTTT ACTGTCACTT TCCTAAATTT GTTAATTTTA TCGTCACTTC
TTAAATGTTT TTTCTTTTGT ATCTATGTAA CTCTATGTTT TAAAACTATG CAATGTAAGT CAGTGTTTTC AAAGTTGGAT
TGGTATTCAA TTCAGGTCGA GTATATATGT CAATGCATCA TCAATTATAT TATTAACTTA TTAATTAAAC TGCGTAAACG

>Vigan.04G329700.01
ATGGAAGCAA CTACCCTCAC CAACGGCAAC CAAAACGGTT CCTTCTGCTT GACTTCCACC AAGAGCAGTG ATCCTCTCAA
TTGGGGAACG GCCGCCGAGG CGCTCAAGGG GAGCCACCTC GATGAGGTCA AGCGCATGGT GGCCGAATAC CGTCAGCCGC
TGGTCCGCCT CGGTGGCGAG ACGCTCACCA TCGCTCAGGT GGCGGCGGTG TCTGCACACG ACCAAGGCGT GAGGGTGGAG
CTGTCGGAGT CCGCTCGGGA AGGTGTTAAG GCGAGCAGTG ACTGGGTGAT GAACAGCATG AACAATGGCA CTGACAGTTA
CGGCGTCACC ACCGGCTTCG GTGCCACCTC ACACCGCCGA ACCAAACAAG GTGGTGCACT TCAGAAAGAA CTCATCAGGT
TTTTAAACGC TGGAATATTT GGAAATGGGA CTGAATCATG CCACACACTG CCACACACAG CAACTAGAGC AGCCATGCTA
GTGAGGATCA ACACTCTTCT TCAAGGCTAC TCAGGCATCA GATTTGAAAT CTTAGAAGCA ATCACCAAGC TCCTTAACAA
CAACGTTACC CCATGTTTGC CACTTCGTGG TACAATCACG GCTTCTGGAG ATCTTGTTCC ACTTTCCTAT ATTGCTGGTT
TGCTAACTGG CAGACCTAAC TCCAAAGCTG TTGGATCTTC TGGAGAAGTA CTTAATGCCA AGCAAGCTTT TGAATCGGCT
AACATCAATT CTGCCTTCTT TGAATTGCAA CCCAAGGAAG GCCTTGCCCT CGTTAATGGC ACGGCTGTCG GTTCTGGCTT
AGCTTCTATT GTTCTCTTTG ATGCAAATAT ACTGGCTGTG TTGTCTGAAG TTCTATCAGC CATTTTTGCC GAAGTGATGC
AAGGGAAGCC TGAGTTCACT GATCATTTGA CACACAAGTT AAAGCACCAT CCTGGTCAAA TTGAGGCTGC TGCCATCATG
GAGCACATTT TGGATGGAAG TTCCTACATG AAGGATGCCA AGAAACTGCA CGAAATAGAT CCTTTGCAAA AGCCAAAACA
AGATAGATAT GCCCTCAGAA CTTCACCACA GTGGCTTGGT CCTCTCATTG AAGTGATTCG TTTCTCCACC AAGTCAATTG
AGAGAGAGAT TAACTCTGTG AATGACAACC CTCTTATTGA TGTCTCAAGG AACAAGGCAC TGCATGGTGG TAATTTCCAA
GGAACTCCAA TCGGAGTCTC CATGGACAAC ACACGTTTGG CTCTTGCATC TATTGGAAAA CTCATGTTTG CTCAATTCTC
CGAGCTTGTC AACGATTTTT ACAACAACGG TCTGCCTTCG AATCTCACTG CTAGCAGAAA TCCTAGCTTG GATTATGGTT
TCAAGGGAGC TGAAATTGCC ATGGCTTCCT ATTGCTCTGA ACTTCAGTAT CTCGCAAATC CAGTAACAAG CCATGTCCAA
AGTGCTGAGC AACACAACCA AGACGTGAAC TCTCTCGGTC TGATTTCGTC CAGGAAGACA AATGAATCTA TTGAGATCCT
TAAGCTCATG TCTTCCACCT TCTTGATGGC ACTTTGCCAA GCAATTGACT TGAGGCATTT GGAGGAGAAT TTGAAAAGCT
CGGTCAAGAA CACTGTCAGT CAAGTTTCCA AGAGGACTCT TACCACAGGT GGCAACGGAG AACTCCACCC TTCAAGATTT
TGCGAAAAGG ATCTACTGAA AGTGGTTGAC AGGGAGTATG TATTTTCCTA CATAGATGAC CCATGCAGTG CTACATACCC
ACTGACGCAA AAACTCAGGC AAGTGCTTGT AGACCATGCC TTGGTAAATG CAGAGAATGA GAAGGACGTT AACACATCGA
TCTTTCAAAA GATTGCAATT TTTGAGGAGG AGTTGAAGAC CATCTTGCCA AAGGAGGTTG AAAGTGCAAG GGCTGCTTAT
GAGAGTGGGA AAGCTGCAAT TCCAAACAAG ATCAAAGAAT GCAGATCTTA CCCACTGTAC AAGTTTGTGC GAGAGGAGTT
GGGGACTGGG TTGCTAACCG GAGAAAAGGT GAAGTCACCA GGTGAAGAGT TTGACAAATT ATTCACTGCA ATATGCCAGG
GTAAAATCAT CGATCCTCTT CTGGAATGCC TTGGAGAGTG GAATGGAGCT CCTCTTCCGA TATCTTAA

>Vigan.04G329700.01
MEATTLTNGN QNGSFCLTST KSSDPLNWGT AAEALKGSHL DEVKRMVAEY RQPLVRLGGE TLTIAQVAAV SAHDQGVRVE
LSESAREGVK ASSDWVMNSM NNGTDSYGVT TGFGATSHRR TKQGGALQKE LIRFLNAGIF GNGTESCHTL PHTATRAAML
VRINTLLQGY SGIRFEILEA ITKLLNNNVT PCLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKAVGSSGEV LNAKQAFESA
NINSAFFELQ PKEGLALVNG TAVGSGLASI VLFDANILAV LSEVLSAIFA EVMQGKPEFT DHLTHKLKHH PGQIEAAAIM
EHILDGSSYM KDAKKLHEID PLQKPKQDRY ALRTSPQWLG PLIEVIRFST KSIEREINSV NDNPLIDVSR NKALHGGNFQ
GTPIGVSMDN TRLALASIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ
SAEQHNQDVN SLGLISSRKT NESIEILKLM SSTFLMALCQ AIDLRHLEEN LKSSVKNTVS QVSKRTLTTG GNGELHPSRF
CEKDLLKVVD REYVFSYIDD PCSATYPLTQ KLRQVLVDHA LVNAENEKDV NTSIFQKIAI FEEELKTILP KEVESARAAY
ESGKAAIPNK IKECRSYPLY KFVREELGTG LLTGEKVKSP GEEFDKLFTA ICQGKIIDPL LECLGEWNGA PLPIS*