GBrowse Details

Vigan.04G310600.01

Basic Information:
Name: Vigan.04G310600.01
Multiple alignment
Variant Information
Position: Chr04:43489804..43493230 (- strand)
Length: 3427
Functional Information:
Description: Similar to vacuolar protein sorting-associated protein 2 homolog 3-like. [XP_008382831.1, Malus domestica]
GO: Biological Process: protein transport (GO:0015031)
InterPro: Snf7 (IPR005024)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:79.57,53.06,21.91,37.77,31.94,14.51,45.60,24.84
Automatic updates:
Name: NM_001250392 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306343 (LOC100306343), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250530 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499888 (LOC100499888), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:43489804..43490151 (- strand)
Length: 348
Type: three_prime_UTR
Position: Chr04:43490152..43490277 (- strand)
Length: 126
Type: CDS
Position: Chr04:43490370..43490405 (- strand)
Length: 36
Type: CDS
Position: Chr04:43490999..43491079 (- strand)
Length: 81
Type: CDS
Position: Chr04:43491180..43491251 (- strand)
Length: 72
Type: CDS
Position: Chr04:43492105..43492176 (- strand)
Length: 72
Type: CDS
Position: Chr04:43492306..43492410 (- strand)
Length: 105
Type: CDS
Position: Chr04:43492522..43492572 (- strand)
Length: 51
Type: CDS
Position: Chr04:43492682..43492716 (- strand)
Length: 35
Type: CDS
Position: Chr04:43492847..43492891 (- strand)
Length: 45
Type: CDS
Position: Chr04:43493034..43493067 (- strand)
Length: 34
Type: CDS
Position: Chr04:43493068..43493230 (- strand)
Length: 163
Type: five_prime_UTR

>Vigan.04G310600.01 class=Sequence position=Chr04:43489804..43493230 (- strand)
GGAGTAAGTG GAAGATGGGA AATAATAACA AACAAACAAA AAGTATATAT ATTAAAAAAA CATGAAAATT AGGATTAACA
AATTACGAGG ATTTCTTCTA TCCACGACCA TCGCTGTGCT GTGCGTGTCT CTTCCTAATT CCCTTCCACG GTGACCGATC
GCCATGAACA TCTTCTCCAA GAAACCCACT GCCAAAGGTT CTTCTTCTTC TTCCGTCAAA TCATCGCTTT CTCCCCCGGC
CAATCATAGT TAATTTACCG TCATGTTTGG GATGCTTTCG TTGCCGATTA ATTTTCACGT TTTGGTTTGG TTAAAAGCCC
TTGTTTCTTT TTCCTGCAGA GGCCCTTCGT GAGAGTAAAC GAGAAATGGC GAACGCCACT AGAGGTGATG TGATGTTTCA
GTCAACCTCA TAAACCCTTC CGTCGATCAA TTTACCTTGG TTATGATCAT TTTTTTGTTT CGAGAGCTGA GATTTCTACT
TGTGTGTGTA AAATAATATG TTTTCTTATT TCAGGTGTGG AGAAGGAAAT TGGAGCACTA CAATTGGAAG TATGTCATTT
TTACAGTTTC TTAACGAGTT AATGTGAGAT TATCCTTTTT TGGAACCTCA ACTTTCGTGT GTATTTATAT AATATGAACT
ATGTGTTTGT GTTATCAGGA AAAGAAGCTT CTTGCTGAGA TAAAAAGAAC TGCTAAGACA GGCAATGAGG TGTCCTCTGC
ATTTCATGCT CATAGTCGGA GTTTTTTTTT TTTTTTTTTG CGTTTGTTTG CAGACATTGA TCACTTGTTC AGAGTTTAAA
AATGAATGTT TTGTTTTCAG GCAGCTACTA AAATTCTAGC ACGCCAGTTG GTCAGGCTTA GGCAACAAAT TGCCAATCTT
CAAGGTAGTA GAGCTCAGAT GAGAGGCATA GCAACTCACA CGCAGGTACG TCGTCGATGG AGCCTTCGTT TTTTGTAATG
CGTTTATTTG TCTTCTTTTG CTACTTGTGT TTGAAAATTG AATAGGTACA TGGTTTATTT GCCCTGTATT TTCTGTGTTT
GTAATTTGAT GCAGGCGATG CATGCCCATT CTTCTGTTGC TGCTGGCATG AAAGGCGCTA CAAAGGCAAT GTCAGCTATC
AATAAGGTTG CACATTCAGT CTTATACTTT AAATATGTAC CTTGTCCGTA TATAGTATAT ATGTTTCTAG GCCATGAGAG
CTACATTTGA TTAGGTTTAT TTATGATCCA TATATATGAT GTGTATTGAA GTCTATATGC ATCCAATGTA GTGATACAAG
ACAACTACTT TTATAGGATA TGATACATGC AGGATATGTA CAAAATTCAT GAAACTTAAT ATAGAGTTTC TATTTTGCAA
ATCCACATTA ACGGCATACT TGTTCAATAT TACTAAGTAA ATGTGATGAG TTGTTGCCTA CAATCAGTAC TTCTATGTCT
TAGGTTTGGC TGTACTAGAA TTTTTGAAGG CTTCTATATT TCAAAAATAC ATATCGTTGA AGTATCTAAA AGTAATGGTA
TAATATATGT GTCCAATACA GATATGTGAA CGAAAATGTA TTTTGATGTT TATTCATGGA TCCGCAAGTT TATAAAAAGT
TGAGGGTTTG GTGCATAAAG TTTATTCATA TTTAGGGTTT ACTGAGGGGT TTGCTAGATT TTATTACACA CAATAGTCAA
GGGCATGACA TTATTCTTTT GCTAATTTTT TGTAAAAATA TTTCTGCCCT CCTTCTCCCC TCCTATCACA TGCACACGTG
AGGGAAGGGA ATGAGAATTC GAAGATAAAA TTGGATGGCG TGGATATATC CCGCATTGAG GAGAAACTCA AAGGAAAAAT
GCTGTGTATA GAAACAGCAA TGATAACAGC ACTTCTTATA ACTTCCTCTG AAAAAAAAAA CATTTAAATC GAAGTCTTTA
AACTCTACTT CCATTTTTAT TATTTTTTCC CCTGTGCTAA ATTAGAAGAT TCATTGCAGC AAATGGAGCC AGCTAAGCAA
GCTAAAATTA TACAGGACTT CCAGAAACAG TCAGCACAGA TGGATATGAC TGTAAGATGT TTTGGTTTAC TAATTTTTGA
AGTTAGAAAA AACAGGAATC ATTTTTGTTT TAACAACTTA CGGACTTTAA TGCTATATAA TTTATGAGCA GACTGAAATG
ATGTCCGATG CCATAGATGA TGCCTTGGAT GATGATGAAG CTGAAGAGGA AACTGATGAA CTGACAAATC AGGTATTCTC
TATTATCTTC CATTGCAACT TCAAAAGATA ATATGCAGTA ATGTTTGCAG GGCCTTTTAC TAATTTTTCA AATAATTTAA
GACTCCTTTT ATATTTGACA TGGCATTTAT TTCACATCAA GTTGATTACT GGGAGGAATA ACAATTATAT CTTTGGTTAG
AATTCTTGAG GATTAGGTGG GTGTGCTAGA ATCATTGGTC CAATTTTAGG TCCTAACCAC AGCAACAACA CTCAGGGCAG
TCAAGAATCA ATAGAAAAAA TCACCAAGCC TTATTTAAAT TTTGGGTGGA GTGAACTAGG TTGATCAATT GATGCCATTT
GGCTAGTCCT TCCATAATCT CATTGAGATA AGTAAAGGAG TAATTGGTGA ATGTCTGTCA AGAGAAAGAG CATGGTGTTT
TTACTATCAT GTTTCCTTCT CCAGATCTGA AACAACTTCT AGAATTCTGA ACTATTTTTG TTGTGGCATA GTTTACAAGG
TTTAGAAGGC AGATGGTCAA GGTCTTATTG TTTGGAGATG GCATTTGTTT TTCAAATTAC AAAAAAGAAA TTGATGACAA
TTTCTCTTAA ACTCTTTCTT TACAGGTGCT GGATGAAATT GGTGTGGATG TTGCCTCACA GGTAGGAATA AGCTGTTCTT
AATCTCTGCA CTCATTTAAT CTGTCATAAT GCTTTTTCTT GAGCTAATGT GATTCATATT TGAACTCTGG CAGTTATCAG
CAGCCCCCAA AGGGAGAATT AGAACAAAGA ATACTGAAGA TGTTAGCAGG TATCTTCTGT CTAACTGGTC ATATATTTTA
AAGAACCAAA CTTGGACCAT TGTGTCTATG AATAAGTAAA AATTTAGTCA TTTTTTTTAT TAATGTTTAT TTGATGCCCC
TGCAGCTCGG GCATTGACGA ACTTGAGAAG CGTTTGGCAG CTCTAAGAAA CCCTTAATTT TTTGCCTGGG ATTGTGATAG
TTTTAAACAA AAATTCATTC CTGGATCATG TTTTACTGGG ATTTGACAAG TTGAGTGTGT ACATACATCT TTGATATTAT
CATGTAGGAA TGATGATATA TCAAAATTGC TGAGATGGCA ATTTACCAGC AGAAGTTTTA GTTGGGGACA TAAAGAATAA
TAAATAGTCT TAAGTTTGAT GCTACTTTTA TGTAAACTGC CACGTTGATT AATGCTGAGG CTAGCCG

>Vigan.04G310600.01
GGAGTAAGTG GAAGATGGGA AATAATAACA AACAAACAAA AAGTATATAT ATTAAAAAAA CATGAAAATT AGGATTAACA
AATTACGAGG ATTTCTTCTA TCCACGACCA TCGCTGTGCT GTGCGTGTCT CTTCCTAATT CCCTTCCACG GTGACCGATC
GCCATGAACA TCTTCTCCAA GAAACCCACT GCCAAAGAGG CCCTTCGTGA GAGTAAACGA GAAATGGCGA ACGCCACTAG
AGGTGTGGAG AAGGAAATTG GAGCACTACA ATTGGAAGAA AAGAAGCTTC TTGCTGAGAT AAAAAGAACT GCTAAGACAG
GCAATGAGGC AGCTACTAAA ATTCTAGCAC GCCAGTTGGT CAGGCTTAGG CAACAAATTG CCAATCTTCA AGGTAGTAGA
GCTCAGATGA GAGGCATAGC AACTCACACG CAGGCGATGC ATGCCCATTC TTCTGTTGCT GCTGGCATGA AAGGCGCTAC
AAAGGCAATG TCAGCTATCA ATAAGCAAAT GGAGCCAGCT AAGCAAGCTA AAATTATACA GGACTTCCAG AAACAGTCAG
CACAGATGGA TATGACTACT GAAATGATGT CCGATGCCAT AGATGATGCC TTGGATGATG ATGAAGCTGA AGAGGAAACT
GATGAACTGA CAAATCAGGT GCTGGATGAA ATTGGTGTGG ATGTTGCCTC ACAGTTATCA GCAGCCCCCA AAGGGAGAAT
TAGAACAAAG AATACTGAAG ATGTTAGCAG GTATCTTCTG TCTAACTGGT CATATATTTT AAAGAACCAA ACTTGGACCA
TTGTGTCTAT GAATAAGTAA AAATTTAGTC ATTTTTTTTA TTAATGTTTA TTTGATGCCC CTGCAGCTCG GGCATTGACG
AACTTGAGAA GCGTTTGGCA GCTCTAAGAA ACCCTTAATT TTTTGCCTGG GATTGTGATA GTTTTAAACA AAAATTCATT
CCTGGATCAT GTTTTACTGG GATTTGACAA GTTGAGTGTG TACATACATC TTTGATATTA TCATGTAGGA ATGATGATAT
ATCAAAATTG CTGAGATGGC AATTTACCAG CAGAAGTTTT AGTTGGGGAC ATAAAGAATA ATAAATAGTC TTAAGTTTGA
TGCTACTTTT ATGTAAACTG CCACGTTGAT TAATGCTGAG GCTAGCCG

>Vigan.04G310600.01
ATGAACATCT TCTCCAAGAA ACCCACTGCC AAAGAGGCCC TTCGTGAGAG TAAACGAGAA ATGGCGAACG CCACTAGAGG
TGTGGAGAAG GAAATTGGAG CACTACAATT GGAAGAAAAG AAGCTTCTTG CTGAGATAAA AAGAACTGCT AAGACAGGCA
ATGAGGCAGC TACTAAAATT CTAGCACGCC AGTTGGTCAG GCTTAGGCAA CAAATTGCCA ATCTTCAAGG TAGTAGAGCT
CAGATGAGAG GCATAGCAAC TCACACGCAG GCGATGCATG CCCATTCTTC TGTTGCTGCT GGCATGAAAG GCGCTACAAA
GGCAATGTCA GCTATCAATA AGCAAATGGA GCCAGCTAAG CAAGCTAAAA TTATACAGGA CTTCCAGAAA CAGTCAGCAC
AGATGGATAT GACTACTGAA ATGATGTCCG ATGCCATAGA TGATGCCTTG GATGATGATG AAGCTGAAGA GGAAACTGAT
GAACTGACAA ATCAGGTGCT GGATGAAATT GGTGTGGATG TTGCCTCACA GTTATCAGCA GCCCCCAAAG GGAGAATTAG
AACAAAGAAT ACTGAAGATG TTAGCAGGTA TCTTCTGTCT AACTGGTCAT ATATTTTAAA GAACCAAACT TGGACCATTG
TGTCTATGAA TAAGTAA

>Vigan.04G310600.01
MNIFSKKPTA KEALRESKRE MANATRGVEK EIGALQLEEK KLLAEIKRTA KTGNEAATKI LARQLVRLRQ QIANLQGSRA
QMRGIATHTQ AMHAHSSVAA GMKGATKAMS AINKQMEPAK QAKIIQDFQK QSAQMDMTTE MMSDAIDDAL DDDEAEEETD
ELTNQVLDEI GVDVASQLSA APKGRIRTKN TEDVSRYLLS NWSYILKNQT WTIVSMNK*