GBrowse Details

Vigan.04G309500.01

Basic Information:
Name: Vigan.04G309500.01
Multiple alignment
Variant Information
Position: Chr04:43364288..43366857 (+ strand)
Length: 2570
Functional Information:
Description: Similar to IQ motif and SEC7 domain-containing protein 2. [XP_007050277.1, Theobroma cacao]
InterPro: Domain of unknown function DUF640 (IPR006936)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.72,7.55,2.05,0.90,28.91,2.20,1.01,41.51
Automatic updates:
Name: NM_001248893 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527164 (LOC100527164), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:43364288..43365126 (+ strand)
Length: 839
Type: five_prime_UTR
Position: Chr04:43365127..43365383 (+ strand)
Length: 257
Type: CDS
Position: Chr04:43365619..43365970 (+ strand)
Length: 352
Type: CDS
Position: Chr04:43365971..43366857 (+ strand)
Length: 887
Type: three_prime_UTR

>Vigan.04G309500.01 class=Sequence position=Chr04:43364288..43366857 (+ strand)
CCCCTTCAAA CTTTTTCCTG TCTCCATCCA AACCTACTGT CCAAACTTTC TTTCCTATTT CCTCCAAAGC CCTAATAACT
CTCTTCTCCT TCATCATCTT CTTCATCGTC TTCTTCTTTC TTTCTTTCTC TCTCTCTACC TAACACACAA CACAAGAAAG
AATATTAATA AAACCATTAA CAAGAAACGA TGAAAATTTG AGTTTGCTCC ACCCTTTAAA GGAAAAAAAC CCAATCCCTC
AGCAATATCA GAAATCAAAG CTACTAAAAA AACCACAAAC ACCTACCCTT GTGACCTTTC TAGTATTGCT CAACACACAC
TCACAACAAC GGGCCACTCA CTCCCATCAA TCTCATCACA TTCTCAACAT CAATAAATCT TCTTTTGCTT CACCATTTGC
AGGTACATGT CTGTCACCTC TCTCTCTCTC TCTTCTCTTC TCTTTCTCAC CCATCGAATA AAAAAATACA AAAAACCCCA
TCAAGTCTGT AACACCAATC AACAATTAAT CAGACTTTGT TCCCTTTCCT TTTTTTTTCT TTTCTTTTTT AATAATTTTC
CCCTTTAAGG TTGTTGTTTT CATTTACAGT AACTTCTAAA AGGAAAAAAA CATTAAAAAA GAAATTATTC AAACAAAAGG
ACATTTCCTC AACTGTTATC CAAACTATAA GTATAGTAAT TGTTTATCTC AATTAACCTT CATCTCTCTC ACACTCCTCA
CTCTGGTCAC TGTCTTGGGA ACCCTAGAAC AGCAACCCAG ATACACTATT CCCAGACACA CACACACACA GAAAATCGAA
ACAATTAACC TTGGATCTGC AAAGCGACCA CGAGGGGCCA TGGATTCAAA TATTCAAGAC TTTATAGACA CATGTAACTC
CGACAACACC TGCAACCTCA TCACCAATAC CACCACCACC AACTTAACCA CAACTGCTTC CTCTTCCTCC GCTGCTTCCA
ACTCCATCGC CAGCAGCAGC CGCTACGAGA ACCAGAAACG CCGTGACTGG AACACCTTCG GTCAATACCT CAAGAATCAC
CGACCCCCTC TCTCCCTCTC AAGGTGTAGC GGTGCACACG TCCTTGAATT CCTAAGGTAC CCACATACAA TACACACCCT
TTTAACCAGT TTTACACACC ATGCACCTCT TCTTTCTCTT TTTTTTTTTC GGATGAAGAA GAACATATGT ATCTTCCCTG
AGAATCAATC TTGCTAGAAC CAGATAGTTT TCATCTGAGT TATACCAAGA TTGTTTTCCT TCCATTATAC ATGTGCCTGT
TTGTTATGAA TACAAACTTT TTTTTTTTGG TAATTACTGC TGTGAGTGTA GGTACCTGGA TCAATTTGGG AAGACGAAAG
TGCACACACC GATCTGCCCC TTTTACGGGC ACCCGAACCC TCCAGCACCT TGTCCATGTC CTCTCAGGCA AGCTTGGGGG
AGCCTTGACG CTCTGATTGG ACGGTTGCGT GCAGCTTTTG AGGAAAATGG AGGAAAGCCC GAGGCAAACC CTTTTGGAGC
TCGAGCTGTG AGACTCTACC TTCGCGAGGT TCGTGATCTG CAATCCAAAG CAAGAGGAAT TAGCTACGAG AAGAAGAAAA
GGAAGCGTCC ACCACCTCAG CAACAACCCA TGCCACTGCC TCATCATTCT CTCCCTCCTC CAGGTGCAAG TGCAACTCAT
TAGAGGAATT CAATTCTCAC TCCATGCCAA ATTCTACTCT TTTTCTCCCT GTCAAAACTT CTTCCTCCTC AACTGGGGTC
TCTTCTTTTA ATCCAATAAG CTATTAGAGT TATGGTCTAA TTTAGTATCA CAACATTTAG GGTTTTTTTT TTCTTTTCTT
CTTTGTCATT TTTTTTTTGT GAAAGCTGCT ATATCTGGTC TATATAGACT GTTTGTCTTT GGATCCTGTT TGTTCAGGGG
GAAGAAAAAG TTTAAAATTA AATTCTGGGA TATCATGCAT CTCTGCTTAA AAAGCAGACA GTGCGGTACT GGTAGTAGAC
TGATAGTGCG TGGGAAGTAC TGAAAAGTGG AAGTGAGACT GTGAGAGTGA ATGGATATAC ATGGAAGCCA TGATCCTTGT
GATGAGAAAC CAAAAGTATG GTATTATTAT TCATAGTTCT ACATATTTGT ACTTTTCGAT GTTGTCAAGC TTAGACTTGT
TTATTAATTA TGCGTCTTAA TTTTATCATG CTTAGCTTTT GGAATAAATA TATATTATTT CAATTTTCTA TTTTCCAAGG
ATTCGATTTT CCTACATACA AAGTTGCTAA CAATTTCATT CCACAAATAG ATGATTGTTT TTGAACCAGA AAACTACAGG
TAGGAAGTCA CTTCCATATG TTGGATAACA TTCTTTTACA TTTGGGACAT TGATGATCAT CATTTTCTCA TATCTACAAA
TGAGTGTTCT TTCTCGACCT CCTTTTTTCC TCACACTTGC CACTTATATA TATATGCTTT ACTGTCTGCC CCAAACATAT
TTTTGTGTGA AAAAACAATG ATAGTGCCTC TCTAAAACTT AATCATAGCA ATAGCAACTT CTGTTTCAAA CTGACAAGAT
TTATTCCCTC 

>Vigan.04G309500.01
CCCCTTCAAA CTTTTTCCTG TCTCCATCCA AACCTACTGT CCAAACTTTC TTTCCTATTT CCTCCAAAGC CCTAATAACT
CTCTTCTCCT TCATCATCTT CTTCATCGTC TTCTTCTTTC TTTCTTTCTC TCTCTCTACC TAACACACAA CACAAGAAAG
AATATTAATA AAACCATTAA CAAGAAACGA TGAAAATTTG AGTTTGCTCC ACCCTTTAAA GGAAAAAAAC CCAATCCCTC
AGCAATATCA GAAATCAAAG CTACTAAAAA AACCACAAAC ACCTACCCTT GTGACCTTTC TAGTATTGCT CAACACACAC
TCACAACAAC GGGCCACTCA CTCCCATCAA TCTCATCACA TTCTCAACAT CAATAAATCT TCTTTTGCTT CACCATTTGC
AGGTACATGT CTGTCACCTC TCTCTCTCTC TCTTCTCTTC TCTTTCTCAC CCATCGAATA AAAAAATACA AAAAACCCCA
TCAAGTCTGT AACACCAATC AACAATTAAT CAGACTTTGT TCCCTTTCCT TTTTTTTTCT TTTCTTTTTT AATAATTTTC
CCCTTTAAGG TTGTTGTTTT CATTTACAGT AACTTCTAAA AGGAAAAAAA CATTAAAAAA GAAATTATTC AAACAAAAGG
ACATTTCCTC AACTGTTATC CAAACTATAA GTATAGTAAT TGTTTATCTC AATTAACCTT CATCTCTCTC ACACTCCTCA
CTCTGGTCAC TGTCTTGGGA ACCCTAGAAC AGCAACCCAG ATACACTATT CCCAGACACA CACACACACA GAAAATCGAA
ACAATTAACC TTGGATCTGC AAAGCGACCA CGAGGGGCCA TGGATTCAAA TATTCAAGAC TTTATAGACA CATGTAACTC
CGACAACACC TGCAACCTCA TCACCAATAC CACCACCACC AACTTAACCA CAACTGCTTC CTCTTCCTCC GCTGCTTCCA
ACTCCATCGC CAGCAGCAGC CGCTACGAGA ACCAGAAACG CCGTGACTGG AACACCTTCG GTCAATACCT CAAGAATCAC
CGACCCCCTC TCTCCCTCTC AAGGTGTAGC GGTGCACACG TCCTTGAATT CCTAAGGTAC CTGGATCAAT TTGGGAAGAC
GAAAGTGCAC ACACCGATCT GCCCCTTTTA CGGGCACCCG AACCCTCCAG CACCTTGTCC ATGTCCTCTC AGGCAAGCTT
GGGGGAGCCT TGACGCTCTG ATTGGACGGT TGCGTGCAGC TTTTGAGGAA AATGGAGGAA AGCCCGAGGC AAACCCTTTT
GGAGCTCGAG CTGTGAGACT CTACCTTCGC GAGGTTCGTG ATCTGCAATC CAAAGCAAGA GGAATTAGCT ACGAGAAGAA
GAAAAGGAAG CGTCCACCAC CTCAGCAACA ACCCATGCCA CTGCCTCATC ATTCTCTCCC TCCTCCAGGT GCAAGTGCAA
CTCATTAGAG GAATTCAATT CTCACTCCAT GCCAAATTCT ACTCTTTTTC TCCCTGTCAA AACTTCTTCC TCCTCAACTG
GGGTCTCTTC TTTTAATCCA ATAAGCTATT AGAGTTATGG TCTAATTTAG TATCACAACA TTTAGGGTTT TTTTTTTCTT
TTCTTCTTTG TCATTTTTTT TTTGTGAAAG CTGCTATATC TGGTCTATAT AGACTGTTTG TCTTTGGATC CTGTTTGTTC
AGGGGGAAGA AAAAGTTTAA AATTAAATTC TGGGATATCA TGCATCTCTG CTTAAAAAGC AGACAGTGCG GTACTGGTAG
TAGACTGATA GTGCGTGGGA AGTACTGAAA AGTGGAAGTG AGACTGTGAG AGTGAATGGA TATACATGGA AGCCATGATC
CTTGTGATGA GAAACCAAAA GTATGGTATT ATTATTCATA GTTCTACATA TTTGTACTTT TCGATGTTGT CAAGCTTAGA
CTTGTTTATT AATTATGCGT CTTAATTTTA TCATGCTTAG CTTTTGGAAT AAATATATAT TATTTCAATT TTCTATTTTC
CAAGGATTCG ATTTTCCTAC ATACAAAGTT GCTAACAATT TCATTCCACA AATAGATGAT TGTTTTTGAA CCAGAAAACT
ACAGGTAGGA AGTCACTTCC ATATGTTGGA TAACATTCTT TTACATTTGG GACATTGATG ATCATCATTT TCTCATATCT
ACAAATGAGT GTTCTTTCTC GACCTCCTTT TTTCCTCACA CTTGCCACTT ATATATATAT GCTTTACTGT CTGCCCCAAA
CATATTTTTG TGTGAAAAAA CAATGATAGT GCCTCTCTAA AACTTAATCA TAGCAATAGC AACTTCTGTT TCAAACTGAC
AAGATTTATT CCCTC

>Vigan.04G309500.01
ATGGATTCAA ATATTCAAGA CTTTATAGAC ACATGTAACT CCGACAACAC CTGCAACCTC ATCACCAATA CCACCACCAC
CAACTTAACC ACAACTGCTT CCTCTTCCTC CGCTGCTTCC AACTCCATCG CCAGCAGCAG CCGCTACGAG AACCAGAAAC
GCCGTGACTG GAACACCTTC GGTCAATACC TCAAGAATCA CCGACCCCCT CTCTCCCTCT CAAGGTGTAG CGGTGCACAC
GTCCTTGAAT TCCTAAGGTA CCTGGATCAA TTTGGGAAGA CGAAAGTGCA CACACCGATC TGCCCCTTTT ACGGGCACCC
GAACCCTCCA GCACCTTGTC CATGTCCTCT CAGGCAAGCT TGGGGGAGCC TTGACGCTCT GATTGGACGG TTGCGTGCAG
CTTTTGAGGA AAATGGAGGA AAGCCCGAGG CAAACCCTTT TGGAGCTCGA GCTGTGAGAC TCTACCTTCG CGAGGTTCGT
GATCTGCAAT CCAAAGCAAG AGGAATTAGC TACGAGAAGA AGAAAAGGAA GCGTCCACCA CCTCAGCAAC AACCCATGCC
ACTGCCTCAT CATTCTCTCC CTCCTCCAGG TGCAAGTGCA ACTCATTAG

>Vigan.04G309500.01
MDSNIQDFID TCNSDNTCNL ITNTTTTNLT TTASSSSAAS NSIASSSRYE NQKRRDWNTF GQYLKNHRPP LSLSRCSGAH
VLEFLRYLDQ FGKTKVHTPI CPFYGHPNPP APCPCPLRQA WGSLDALIGR LRAAFEENGG KPEANPFGAR AVRLYLREVR
DLQSKARGIS YEKKKRKRPP PQQQPMPLPH HSLPPPGASA TH*