GBrowse Details

Vigan.04G308800.01

Basic Information:
Name: Vigan.04G308800.01
Multiple alignment
Variant Information
Position: Chr04:43238563..43242027 (- strand)
Length: 3465
Functional Information:
Description: Similar to actin-depolymerizing factor-like. [XP_004493773.1, Cicer arietinum]
GO: Biological Process: actin filament depolymerization (GO:0030042)
Cellular Component: intracellular (GO:0005622)
Cellular Component: actin cytoskeleton (GO:0015629)
Molecular Function: actin binding (GO:0003779)
InterPro: Actin-binding, cofilin/tropomyosin type (IPR002108)
ADF/Cofilin/Destrin (IPR017904)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:62.14,48.59,45.53,25.43,39.57,110.42,53.34,43.14
Arabidopsis thaliana homolog: AT2G31200.1
Automatic updates:
Name: NM_001249074 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527688 (LOC100527688), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001252728 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max actin-depolymerizing factor 6-like (LOC100819975), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:43238563..43239441 (- strand)
Length: 879
Type: three_prime_UTR
Position: Chr04:43239442..43239592 (- strand)
Length: 151
Type: CDS
Position: Chr04:43241302..43241567 (- strand)
Length: 266
Type: CDS
Position: Chr04:43241696..43241962 (- strand)
Length: 267
Type: CDS
Position: Chr04:43241963..43242027 (- strand)
Length: 65
Type: five_prime_UTR

>Vigan.04G308800.01 class=Sequence position=Chr04:43238563..43242027 (- strand)
TAGATGGTTG TCTAATAAGT GAAAAATAAA AATAAAATAA AATAGAATAT ACGCGGCGAA GGGTTATGGC AAGCATTGAA
GAACGTGGGT CCCATGGGCG GTGGAAAATC CTTGTTCTTT TCGCAGATTC ACGTTCCCCA ATTCGACTTT GCGTTGCTAC
AACGCACCGC CCCAATCATA ATAACCTATT CTCATCTATT TTATTCACTC AACAATCTTT TCTTTGGCTC TTTATAATAA
TTTCTCTTCA CTCTTACCCT TCAATACTTC ACTTTCTTCT TCATCATCCA ACTTCACTCA TCATCATCAT GTCTTTCAGA
GGCCTAAGCA GGGTAACATT TTACATCTCT CACCTTTTTT TTTCTGTCAA AGTTTTGGCA TGTGAATTTT GTATGCGTAT
TTGATTTCAA AACCAAGTCT TGGTTGAAAG GCTATTGACC CAGATGCTTT TAAATTCCAG CCAAATGCTT CATCAGGCAT
GGGTGTTGCT GATCACAGCA AAACCACCTT CATGGAACTG AAGCAGAAGA AGGTCCATCG CTATGTGATC TTTAAGGTTG
ATGAGAAGAA AAGGGAGGTT GTGGTTGAGA AGACCGGTGG CCCCGCTGAG AGCTATGATG ATTTCGCTGC ATCTTTGCCT
GAGAATGATT GCAGATATGC TGTCTTTGAC TTCGATTTCG TCACTTCTGA GAATTGTCAA AAGAGCAAAA TCTTCTTCAT
TGCATGGTTA GTTTAGTTTC TCTGTGTTCT GCTTTTATAT GTTTAAGAAA AATATCTCTA ACTTTGTCCA CAAGTAAAAG
CTTGGTTGCA CTTACCATAA ACATGTTTGT GAGACATGAT ATGTTAAGAC ATGGTATGTT TAGAAGTGTA CTTTTGCTTG
AGACTATAAA TGGTCCAATA GGAGTGCAAT AATATGTTTA AGAACCAATA ATTTTTTTAG GATAGGTAAT AAAGCATGAC
TCGCACATAT TATCTTTGAA AGAGAACTTT AAGACATTAA GTCTAATTTA AGTTTAATTT AACTCCACTA AAACAAATTT
AAAACTTGAA GTCTAATTTA ACGGTGAAGT CTAATTTAAC TCTAATTTGT AGGATGAGAT TGACATTTAT TTATATATTC
TAAACTTTTT CATTAGTTAT GTATTTTAAA CTGACTTTAT CATTAATTAT ATATTTTAAA CTGACTTTAT TACTAATTAT
ATATTTTAAA TTGACTTTAT CACTAATTAT ATATTTTAAA CCGACTTTAT TACTGGTTTT TGTTGGCCTT TCAACAAGGT
ACTTGATGTC TTTTTCTTAT GCAAACAAAG CAAATTCCGC AGCTTTGATC ATATGTTTGG TAGTTTCGAA ATAACCATGC
CATGTCATGC TATTCTTCTA AGCCCGTGGC AATATTGCAC TAATTAAGTG TCACTCCGTG CTATTCTTCT AAGCTCGTGG
CAATATTACA CTAATTAAGT GTCACTCCTT GCTTGTCCTC TCTTGTATTA TGGAGCTAAA TGTTCTTTGT TTTATTTTTC
TTGAGGTTAA ATTTCTTGTC TTATTCTTTG GTGGGACAAG AATTTGTTGC TCGTTAGGCT GCTTATCTTA GCAAATGTGG
TATTTTGAGA TTTTTGGTCG CACATCACTC CTTTTCCAAT CTGGATATCA AGCTCAGATA CCAATTTCAG TGGCATCCTC
TGTTAGTTGT ATTTAAGTTG CTGATAGATC ATTACTGTGT AGAGGTTCTT ATGTTTATAC GAAAAATGAT ACATAAATGA
TTAATCATGG CAAACATTAT CATGCTTGAT GCTTTAGTTC AACCATATCA AGAGTAGGTT TCCTAAGTAT CAGTTTTTTG
GTGGGGGTGG GTTGGAATTT GTCTTGCCCA TTATTAGAGA TTTATAAATT TGTCTTTGCT ATTATTGCTT TATTATTTTC
AGAGTGCCCT CAAACAAGAT TATGGACTTC AAGGAAATGT TAGTATTTTC CATCATCATG TATAGTTGAC TAGTTTATTT
TTTTCAGTTG CTGGAAGAAC CTGTCTTTAC ATTTTTACCT AGCTTCTCAG AAATTAAAAA AAAAATAGTA TAAATGTAAA
TATCAAATGG ACTTTTCTAG TTGAACTGAT TTAGCACTCT ATTTATTGCA TCTTTGGAGC TGATCGTCTG TGGAAAGACT
TCTCTGTCTC TCTGATCAAC CATTATTAGT TTCTTGTTTG AGTGGCATCT TGACTCACTT CCTAACAGTA TATTTTCCAT
AATTTATTTG AAGTATGCCC TCAATATCTT GCTGCGAGCT TGTCTCTCCT TTTCCTCTTG TGAAGAACAA ACTTGAATTT
AACTATTTTT ATTCCTGCCT TCATCCATCC TCAACATCAT GCTTCTTTAT TTACTTTCTC TGTGATTTGG CCAGAAATAT
CATTCTTAGT TATTTCATTG CATGATATTG GTTAGGTCCC CTTCAACTTC TCGGATTCGT GCCAAGATGC TCTACGCCAC
AACTAAAGAC AGGTTAAGAC GTGAGCTAGA TGGTGTTCAT TATGAAATCC AGGCTACTGA CCCCACTGAA ATGGATCTTG
AAGTGCTGAG AGAGCGTGCA CATTGAAATG TTTATGTACT TGTTCATTTT CTTTTCAGAT TCTACTAGGT TTCTACTTTC
AATGAATTGC AGAGCCCATC TTGCCACAAT AATATGAATC TGAAGGGGTA TTGATTAAAA GCTCTTAGAT GTCACTATTG
TAAATCCCGA TTTACTGGAC CTGTATTGTA GAGCGTGACT TTATGGATCC AGATAGATGT GGTGGAGATA AAAGTCTTTG
CTTGTAACTC TAGCTAAGAA TATCTAGAAA ATTTCAGAAC TTGCATTTAT TAATATTCTC TTCTTAAAAT TAATCCTGTG
TTTGTGTTTG TGTTTGGTTT TGAGGAAGGG GAGCTAAGAA ATACTGTGAT GTTTGCTGGG AGGGAAGAGA ATGAGAAATA
ATTAAAAAAA AATTAGGACT CATTGGACTA TTTCTGATTA TTGTTTTCCG ATAATAGGTG AAGAGATTTG CGCGGGGAAA
TGTTGGACAA ATTTGACACA AACAACATTT TATACAAGAC ATCAAGATAG TATCTTCAGC TTAAAATCCT AAGGTTATAT
TTGACACTGA TGAAATATAA ACGTTTTATA GTTTTATATA AGACATCAAA ACATAACGTA GGCTAAGCTA CTGTTAGGTC
TTGAAAGAAT CACATGCAAC GAGCCTAACA TAAATGTATA ACTTGTTCGT TAGCAAGATG GTGGATAGGT GTTCCAGCCA
AAGCCAAGTT GAAGGAGATC AGTTCTTGAG CTTTACGATA TTTGTGTTTC TTTCTAGTGA AATTCCAAAA TATAAGTGCA
TCACATTCCT AAGTTGTACT TGTTTCTAAG ACTTTTGAAG TGAGTCTTCA TCTGCGAGCT TCGATTCAAA TATATGACTG
CAAACTGTTT CAACTTATGT TCCGG

>Vigan.04G308800.01
TAGATGGTTG TCTAATAAGT GAAAAATAAA AATAAAATAA AATAGAATAT ACGCGGCGAA GGGTTATGGC AAGCATTGAA
GAACGTGGGT CCCATGGGCG GTGGAAAATC CTTGTTCTTT TCGCAGATTC ACGTTCCCCA ATTCGACTTT GCGTTGCTAC
AACGCACCGC CCCAATCATA ATAACCTATT CTCATCTATT TTATTCACTC AACAATCTTT TCTTTGGCTC TTTATAATAA
TTTCTCTTCA CTCTTACCCT TCAATACTTC ACTTTCTTCT TCATCATCCA ACTTCACTCA TCATCATCAT GTCTTTCAGA
GGCCTAAGCA GGCCAAATGC TTCATCAGGC ATGGGTGTTG CTGATCACAG CAAAACCACC TTCATGGAAC TGAAGCAGAA
GAAGGTCCAT CGCTATGTGA TCTTTAAGGT TGATGAGAAG AAAAGGGAGG TTGTGGTTGA GAAGACCGGT GGCCCCGCTG
AGAGCTATGA TGATTTCGCT GCATCTTTGC CTGAGAATGA TTGCAGATAT GCTGTCTTTG ACTTCGATTT CGTCACTTCT
GAGAATTGTC AAAAGAGCAA AATCTTCTTC ATTGCATGGT CCCCTTCAAC TTCTCGGATT CGTGCCAAGA TGCTCTACGC
CACAACTAAA GACAGGTTAA GACGTGAGCT AGATGGTGTT CATTATGAAA TCCAGGCTAC TGACCCCACT GAAATGGATC
TTGAAGTGCT GAGAGAGCGT GCACATTGAA ATGTTTATGT ACTTGTTCAT TTTCTTTTCA GATTCTACTA GGTTTCTACT
TTCAATGAAT TGCAGAGCCC ATCTTGCCAC AATAATATGA ATCTGAAGGG GTATTGATTA AAAGCTCTTA GATGTCACTA
TTGTAAATCC CGATTTACTG GACCTGTATT GTAGAGCGTG ACTTTATGGA TCCAGATAGA TGTGGTGGAG ATAAAAGTCT
TTGCTTGTAA CTCTAGCTAA GAATATCTAG AAAATTTCAG AACTTGCATT TATTAATATT CTCTTCTTAA AATTAATCCT
GTGTTTGTGT TTGTGTTTGG TTTTGAGGAA GGGGAGCTAA GAAATACTGT GATGTTTGCT GGGAGGGAAG AGAATGAGAA
ATAATTAAAA AAAAATTAGG ACTCATTGGA CTATTTCTGA TTATTGTTTT CCGATAATAG GTGAAGAGAT TTGCGCGGGG
AAATGTTGGA CAAATTTGAC ACAAACAACA TTTTATACAA GACATCAAGA TAGTATCTTC AGCTTAAAAT CCTAAGGTTA
TATTTGACAC TGATGAAATA TAAACGTTTT ATAGTTTTAT ATAAGACATC AAAACATAAC GTAGGCTAAG CTACTGTTAG
GTCTTGAAAG AATCACATGC AACGAGCCTA ACATAAATGT ATAACTTGTT CGTTAGCAAG ATGGTGGATA GGTGTTCCAG
CCAAAGCCAA GTTGAAGGAG ATCAGTTCTT GAGCTTTACG ATATTTGTGT TTCTTTCTAG TGAAATTCCA AAATATAAGT
GCATCACATT CCTAAGTTGT ACTTGTTTCT AAGACTTTTG AAGTGAGTCT TCATCTGCGA GCTTCGATTC AAATATATGA
CTGCAAACTG TTTCAACTTA TGTTCCGG

>Vigan.04G308800.01
ATGGCAAGCA TTGAAGAACG TGGGTCCCAT GGGCGGTGGA AAATCCTTGT TCTTTTCGCA GATTCACGTT CCCCAATTCG
ACTTTGCGTT GCTACAACGC ACCGCCCCAA TCATAATAAC CTATTCTCAT CTATTTTATT CACTCAACAA TCTTTTCTTT
GGCTCTTTAT AATAATTTCT CTTCACTCTT ACCCTTCAAT ACTTCACTTT CTTCTTCATC ATCCAACTTC ACTCATCATC
ATCATGTCTT TCAGAGGCCT AAGCAGGCCA AATGCTTCAT CAGGCATGGG TGTTGCTGAT CACAGCAAAA CCACCTTCAT
GGAACTGAAG CAGAAGAAGG TCCATCGCTA TGTGATCTTT AAGGTTGATG AGAAGAAAAG GGAGGTTGTG GTTGAGAAGA
CCGGTGGCCC CGCTGAGAGC TATGATGATT TCGCTGCATC TTTGCCTGAG AATGATTGCA GATATGCTGT CTTTGACTTC
GATTTCGTCA CTTCTGAGAA TTGTCAAAAG AGCAAAATCT TCTTCATTGC ATGGTCCCCT TCAACTTCTC GGATTCGTGC
CAAGATGCTC TACGCCACAA CTAAAGACAG GTTAAGACGT GAGCTAGATG GTGTTCATTA TGAAATCCAG GCTACTGACC
CCACTGAAAT GGATCTTGAA GTGCTGAGAG AGCGTGCACA TTGA

>Vigan.04G308800.01
MASIEERGSH GRWKILVLFA DSRSPIRLCV ATTHRPNHNN LFSSILFTQQ SFLWLFIIIS LHSYPSILHF LLHHPTSLII
IMSFRGLSRP NASSGMGVAD HSKTTFMELK QKKVHRYVIF KVDEKKREVV VEKTGGPAES YDDFAASLPE NDCRYAVFDF
DFVTSENCQK SKIFFIAWSP STSRIRAKML YATTKDRLRR ELDGVHYEIQ ATDPTEMDLE VLRERAH*