GBrowse Details

Vigan.04G294800.01

Basic Information:
Name: Vigan.04G294800.01
Multiple alignment
Variant Information
Position: Chr04:41649554..41654229 (+ strand)
Length: 4676
Functional Information:
Description: Similar to Elongation factor Tu. [V7CYM1, Phaseolus vulgaris]
GO: Biological Process: translational elongation (GO:0006414)
Cellular Component: intracellular (GO:0005622)
Molecular Function: translation elongation factor activity (GO:0003746)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Elongation factor, GTP-binding domain (IPR000795)
Translation elongation factor EFTu/EF1A, C-terminal (IPR004160)
Translation elongation factor EFTu/EF1A, domain 2 (IPR004161)
Translation elongation factor EFTu/EF1A, bacterial/organelle (IPR004541)
Small GTP-binding protein domain (IPR005225)
Translation protein, beta-barrel domain (IPR009000)
Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (IPR009001)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.11,63.31,29.43,14.99,59.60,64.93,42.84,21.26
Arabidopsis thaliana homolog: AT4G02930.1
Automatic updates:
Name: NM_001255142 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max elongation factor Tu, mitochondrial-like (LOC100791600), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001289338 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max elongation factor Tu, mitochondrial-like (LOC100776891), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:41649554..41649809 (+ strand)
Length: 256
Type: five_prime_UTR
Position: Chr04:41649810..41649991 (+ strand)
Length: 182
Type: CDS
Position: Chr04:41650105..41650180 (+ strand)
Length: 76
Type: CDS
Position: Chr04:41650257..41650349 (+ strand)
Length: 93
Type: CDS
Position: Chr04:41650435..41650509 (+ strand)
Length: 75
Type: CDS
Position: Chr04:41650948..41651052 (+ strand)
Length: 105
Type: CDS
Position: Chr04:41651166..41651256 (+ strand)
Length: 91
Type: CDS
Position: Chr04:41651376..41651581 (+ strand)
Length: 206
Type: CDS
Position: Chr04:41652660..41652743 (+ strand)
Length: 84
Type: CDS
Position: Chr04:41652973..41653038 (+ strand)
Length: 66
Type: CDS
Position: Chr04:41653128..41653190 (+ strand)
Length: 63
Type: CDS
Position: Chr04:41653355..41653595 (+ strand)
Length: 241
Type: CDS
Position: Chr04:41653735..41653805 (+ strand)
Length: 71
Type: CDS
Position: Chr04:41653806..41654229 (+ strand)
Length: 424
Type: three_prime_UTR

>Vigan.04G294800.01 class=Sequence position=Chr04:41649554..41654229 (+ strand)
AGAAGCAAGA AGGAAAAAAA CATTTGTAAG AGAAAAAAGA CGTGGTTAGT TCAGATACTT GTTTCGGCGT TGTGTTCCGA
AACATTATGA GAGTGCTCGA ATTGGGCCGC ACGAATATGA CGGGTCGGTG TCGGGCGCCC ATTCTAAAAC CCTCGTTCTT
CGCACTCACT GCACTTGGCT TTTGTCTTCC CTCTCCTAAA ACCCTCGCCT CTGCATTCCA TAGTTAGGGC TTTTCTTTCT
TCTCATCACT TCTTCAATGG CCACTCTTCT TCTCAGACAC TCCTCTTCCA CTTCTCGCCG CCTCTTCCCC TTAGCCTCTC
AAATCCACTC TTCCGTATCT CGTTCTCCTC TCTCTACTCC CAATGACTCC ACCACCTCCT CCTCCTATTC TTTCAATTCC
CATCCATGGT GGAGATCCAT GGCAACTTTC ACCAGAACGT AACGCTCTCT CTTTCTCTTT TTTGTCACAA AATTTACAAT
ATGTAAGTAA CAGTAATCGT TATTAATACG TGTTTTACTT ATTTTGTTCA TCTTATTGTT TGATGTTGCA GGAAGCCTCA
CGTTAATGTC GGAACTATTG GACACGTGGA TCACGGGAAG ACCACGCTAA CGGCGGCAAT CACCAAGGTC TTGATTCACT
CTTTCTTTAA ATGTGTGTTG AGGTGGATGT TTTGGTGTTT ATTACTCAAT TAGGTTTGAT CAGGTGCTTG CGGATGAAGG
GAAGGCCAAG GCTGTGGCCT TTGATGAAAT TGACAAGGCT CCTGAAGAAA AGAAGAGAGG AATCACCATT GCGACGGTTT
GGAATCGTAC CTTTTTGTTC TTGCAATCAA CTGTGTTGTT TTCTGCTGAG ATGTATACTT GCTCAATATT TCGGTTTTCA
GGCTCATGTG GAGTATGAGA CTGCCAAACG ACATTATGCG CATGTGGACT GCCCTGGACA CGCGGATTAT GTTAAAGTAA
GCTTTCTAAT TTGGTTTAAT TTCTCCAAGA ATGGTTTGGT TGATTGGAGT TATCAATTGC CTAACAGAAG CTGGGTGGCT
AAGCTGTGGC GGACAAATTT AAGGATTTTT ACCATGTATA ATAGTTAATT GTGGAATTTA GCATATTTTG GTGCTGGTGT
AGCCTGATCT TCTTTTCAAA ACGAGATGCA AAATGTATGC TAGGAATTTG GAAGTAGATT AGTTTGTAAC AAAATACATT
TTATAGTTAT TTATTACACT GTATATTGGC AACAGTTGCA TCTGTCAGAT TTATATTCTC CATGAATGCT GGTGGGTTTA
GCATTCCAGC TTGCCTTTAT GTACTTACTA GATGTTTTAT CTAATGGTTT TATTTAGTTT GAATAACAAA ATAATTCTTG
TTGACGATAT GCTTTATAAT TGTCTGCTTT TCAGAATATG ATTACGGGAG CTGCCCAAAT GGATGGTGGT ATACTTGTTG
TATCTGCACC TGATGGACCA ATGCCTCAAA CAAAGGAGCA CATTCTTCTT GCTCGCCAAG TAGGTATTCT ACTGATGTGG
TTTGTATATA TATATATATA TATATACCTA GAATGTCTAG ACCTTCCTCC TTACTTCTAG ATTGACATTT TATCTTTAAA
TGTATTATGC AGGTTGGTGT GCCATCTCTT GTTTGCTTTC TAAATAAAGT TGACGCTGTT GATGATCCAG AGTTGTTAGA
GCTTGTAGAG ATGGAGCTAC GTGGTAGGTT GTTTCTCCAA GGCTTCCCTT CTCTTGTTAA TGCTCAGAAA ATGAATAAGA
CTGCTTAAGT GTCTGTTGTC CGTGTTTGCT AAAATGTGTT TTTATGTTAA TGTGTTTGGC AGAGCTTCTG AGCTTCTACA
AGTTCCCTGG GGATGAAATC CCGATCATCA GAGGTTCAGC CTTGTCTGCT TTACAAGGTA CAAATGACGA GATTGGAAGA
CAAGCGATTC TAAAATTAAT GGATGCTGTA GACGAATACA TTCCTGACCC TGTTCGCCAA CTTGACAAGC CTTTCTTAAT
GCCAATTGAA GATGTGTTCT CAATTCAGGT AAAAGGACTT GAACTTTATT TTCTGGGTTA ATTTTTGGAG AAATCAGATT
CATTGAAGTA AAGATCGTCT CAGTTATAAA ATTCTTACAG TATGTAATGT AAGTCTTATG TTTTTATCAC GTTCTATCAC
CTTCCATCTG TTCCAGTATA AACACCGCTT AGGTTACTAT ACTGTTTAAG AAGTATTATT TGTTAAAATA AAATGTGACA
CACAAAAATA ATTGGACTCT TTAATTCACT GTGGTTATTT TCATTAAATC TTGGCATGCT TTAAATAGGT GCAAATAGGG
TCTTAGGCCA AATAAAAACT AAAAATAACT CACTCAAAAT AAAAATAACT ACTTAATTTA TTCTCTATCT TATATAAACA
AAACAAAATA ATACTATACT TAAATAAATA GAAAATCAAA ACTACTTATC CTATTTTATC TCTATCAAAA TCAAAATAAA
TATTACTAGA TTCAAACTAA TAAAATAAGA CTCAAACAAA ATTACCAATA AACTCCTAAA ATTTAAGTTT ATCCAAACAC
TATTTATTAC TATTTTTTAT ATTAAAATTG TTTTAAATTC TTAGTATTCT CCTTCAGTTT ACTCAAACTA CAGCAATTAT
TGATGTACTT AACATCATAA GCAGATGGGA TTATGAACAC CGGAGCATAT GTGGAATAGT GGTTTATAAT ACTGGGTCAT
CCGTGTAACT GTGGTCACTT GAACAATTTC TTTCTTGCTC TTCTAAATCC AGTTAGGTGA AGGATAAAAT TTCAAATTCT
TAATAATTTT GTATAGGTTT TTCAAGAATA AAAAAGGAAA GGAGGTAGTA TTTGTTACGG CCTTGCTATT TGTAATAATA
TGACGCAGTG GTGTAATTTA AATCTTAACA TGATGCTTTA AACACTGTTG TCTCATTTAA GTGTTTTGTT TTCCCTTGTA
AGAATATCAA AATTTTTATT TTCAACACTG CTTAGTTCTC TCTATCTGCA TTTGTTTCAT TGCATATATT GGATTGGATG
GAAATATGTA TGCGGGCAAT GGTTTCCATC ATATCAGCTG CTTTATATTT TTCACTTGTG ATGAAGGGGC GAGGAACAGT
TGCCACTGGC CGTGTTGAAC AAGGCGTCAT TAAAGTAGGT GAAGAAGTGG AGGTGTTGGG TCTAATGCAG GTATGTATGT
TCATTTAGTC ATTTCCTCTA TATAACTGCC CTCTGATCCT CATCGTTACT TTCTATTAAT GTCCACTTGT TGCTTTCTTT
TGCTGCTATA TAATTTTCAT TTGCCACTAA TGACTGATGA TTAGTGGTTT GTTCTTGATG AGCATTAGTT CATTTCTCTA
TCAGAGCTTT GGTTAATTCC TTTATAATGG TAGTCCTAAA ACCGAGTTTT CCTTGGTAGG GTGGTCCTCT GAAAACAACA
GTAACTGGAG TTGAGATGTT CAAGAAGATT TTGGATCAAG GACAAGTAAG TGACTGTTAT CTTCATGCAA AAGGGCTATG
GCTATTGACG TGGAGCATAT GTTAAACTAA AATGGATTGT TTATGTATTA TTAGGCGGGT GACAATGTTG GTCTTCTTCT
CCGTGGTCTG AAGCGTGAAG ATATTCAACG TGGTCAGGTT AGTTGCAGAG ATCAAGTTTT TCCTTTTTTT GTTAGAAATT
GTAGTTGCAT GCAAGAGAAC AACATATATC ATCTGTGTCT GTTTTAGTAA AATTGTTGAG TTTTGAATTC AAATTTCTAA
ATTTTTGCTA CCGCTTTCCT TGTGCTGCCT TCTATTGGAA GGTGATTGCA AAGCCAGGTT CTATAAAAAC ATACAAGAGG
TTTGAGGCAG AGATATATGT ACTCACAAAG GATGAGGGTG GCCGACACAC CGCATTCTTC TCTAACTATA GACCTCAGTT
TTACTTGAGG ACAGCTGATA TCACTGGAAA AGTAGAGTTG CCTGAAAATG TTAAGATGGT TATGCCCGGA GACAACGTTA
CAGCTGTGTT TGAATTGATT TCAGCAGTTC CACTTGAAGC GGGTCAGTAG TACTACATTA GTGAACTAAA TATTATTTCA
GTGTATATAC CTAAATGTAT TTATCCGTAT GTTGAATATT CTTGTACACT TCATGCTGGA AACTAGAAAT TTTGCTTTAC
TGTTTGCAAT TGATTTTACA GGACAAAGAT TTGCCTTGAG AGAAGGCGGC AGAACAGTTG GTGCAGGTGT GGTGTCAAAA
GTACTGAGCT AGTACCGTTC TCTGTGACTC AAGTTTTAGT CTACACATTT GCTAAAAGGG ATTGGAAGCC CTGAGACCTG
ACTATTTATC CTGAAAAATA CAAACCATGT GCCAAGTAAT TATCATTTAG CGGTTGTGTT GGATGAAGTT CAGTAAATTG
AGTAAAATTT AGAGAAATTA ATCTTCAATG TTCATTTTTG TAGTGCATAA TTTTCAACAT GCCTTTGATC ACCGCAGACT
TTTTCTGCTT TATGAAAAAT AATGTGTATC TTGTGTTGCA ACAGTCCGAG CCATTGATAT TGGATTTTAC AAATCTTTTG
TTTTTAATAA CGATTTTCAT ATTGTTTGAA CCTCTATCGT TGATGGCATA CATTGATTTG AGAAAAATGA AAAGGTTGCA
ATATGATTTG TTAGCTGTAA TGATACATTT TGGGAA

>Vigan.04G294800.01
AGAAGCAAGA AGGAAAAAAA CATTTGTAAG AGAAAAAAGA CGTGGTTAGT TCAGATACTT GTTTCGGCGT TGTGTTCCGA
AACATTATGA GAGTGCTCGA ATTGGGCCGC ACGAATATGA CGGGTCGGTG TCGGGCGCCC ATTCTAAAAC CCTCGTTCTT
CGCACTCACT GCACTTGGCT TTTGTCTTCC CTCTCCTAAA ACCCTCGCCT CTGCATTCCA TAGTTAGGGC TTTTCTTTCT
TCTCATCACT TCTTCAATGG CCACTCTTCT TCTCAGACAC TCCTCTTCCA CTTCTCGCCG CCTCTTCCCC TTAGCCTCTC
AAATCCACTC TTCCGTATCT CGTTCTCCTC TCTCTACTCC CAATGACTCC ACCACCTCCT CCTCCTATTC TTTCAATTCC
CATCCATGGT GGAGATCCAT GGCAACTTTC ACCAGAACGA AGCCTCACGT TAATGTCGGA ACTATTGGAC ACGTGGATCA
CGGGAAGACC ACGCTAACGG CGGCAATCAC CAAGGTGCTT GCGGATGAAG GGAAGGCCAA GGCTGTGGCC TTTGATGAAA
TTGACAAGGC TCCTGAAGAA AAGAAGAGAG GAATCACCAT TGCGACGGCT CATGTGGAGT ATGAGACTGC CAAACGACAT
TATGCGCATG TGGACTGCCC TGGACACGCG GATTATGTTA AAAATATGAT TACGGGAGCT GCCCAAATGG ATGGTGGTAT
ACTTGTTGTA TCTGCACCTG ATGGACCAAT GCCTCAAACA AAGGAGCACA TTCTTCTTGC TCGCCAAGTT GGTGTGCCAT
CTCTTGTTTG CTTTCTAAAT AAAGTTGACG CTGTTGATGA TCCAGAGTTG TTAGAGCTTG TAGAGATGGA GCTACGTGAG
CTTCTGAGCT TCTACAAGTT CCCTGGGGAT GAAATCCCGA TCATCAGAGG TTCAGCCTTG TCTGCTTTAC AAGGTACAAA
TGACGAGATT GGAAGACAAG CGATTCTAAA ATTAATGGAT GCTGTAGACG AATACATTCC TGACCCTGTT CGCCAACTTG
ACAAGCCTTT CTTAATGCCA ATTGAAGATG TGTTCTCAAT TCAGGGGCGA GGAACAGTTG CCACTGGCCG TGTTGAACAA
GGCGTCATTA AAGTAGGTGA AGAAGTGGAG GTGTTGGGTC TAATGCAGGG TGGTCCTCTG AAAACAACAG TAACTGGAGT
TGAGATGTTC AAGAAGATTT TGGATCAAGG ACAAGCGGGT GACAATGTTG GTCTTCTTCT CCGTGGTCTG AAGCGTGAAG
ATATTCAACG TGGTCAGGTG ATTGCAAAGC CAGGTTCTAT AAAAACATAC AAGAGGTTTG AGGCAGAGAT ATATGTACTC
ACAAAGGATG AGGGTGGCCG ACACACCGCA TTCTTCTCTA ACTATAGACC TCAGTTTTAC TTGAGGACAG CTGATATCAC
TGGAAAAGTA GAGTTGCCTG AAAATGTTAA GATGGTTATG CCCGGAGACA ACGTTACAGC TGTGTTTGAA TTGATTTCAG
CAGTTCCACT TGAAGCGGGA CAAAGATTTG CCTTGAGAGA AGGCGGCAGA ACAGTTGGTG CAGGTGTGGT GTCAAAAGTA
CTGAGCTAGT ACCGTTCTCT GTGACTCAAG TTTTAGTCTA CACATTTGCT AAAAGGGATT GGAAGCCCTG AGACCTGACT
ATTTATCCTG AAAAATACAA ACCATGTGCC AAGTAATTAT CATTTAGCGG TTGTGTTGGA TGAAGTTCAG TAAATTGAGT
AAAATTTAGA GAAATTAATC TTCAATGTTC ATTTTTGTAG TGCATAATTT TCAACATGCC TTTGATCACC GCAGACTTTT
TCTGCTTTAT GAAAAATAAT GTGTATCTTG TGTTGCAACA GTCCGAGCCA TTGATATTGG ATTTTACAAA TCTTTTGTTT
TTAATAACGA TTTTCATATT GTTTGAACCT CTATCGTTGA TGGCATACAT TGATTTGAGA AAAATGAAAA GGTTGCAATA
TGATTTGTTA GCTGTAATGA TACATTTTGG GAA

>Vigan.04G294800.01
ATGGCCACTC TTCTTCTCAG ACACTCCTCT TCCACTTCTC GCCGCCTCTT CCCCTTAGCC TCTCAAATCC ACTCTTCCGT
ATCTCGTTCT CCTCTCTCTA CTCCCAATGA CTCCACCACC TCCTCCTCCT ATTCTTTCAA TTCCCATCCA TGGTGGAGAT
CCATGGCAAC TTTCACCAGA ACGAAGCCTC ACGTTAATGT CGGAACTATT GGACACGTGG ATCACGGGAA GACCACGCTA
ACGGCGGCAA TCACCAAGGT GCTTGCGGAT GAAGGGAAGG CCAAGGCTGT GGCCTTTGAT GAAATTGACA AGGCTCCTGA
AGAAAAGAAG AGAGGAATCA CCATTGCGAC GGCTCATGTG GAGTATGAGA CTGCCAAACG ACATTATGCG CATGTGGACT
GCCCTGGACA CGCGGATTAT GTTAAAAATA TGATTACGGG AGCTGCCCAA ATGGATGGTG GTATACTTGT TGTATCTGCA
CCTGATGGAC CAATGCCTCA AACAAAGGAG CACATTCTTC TTGCTCGCCA AGTTGGTGTG CCATCTCTTG TTTGCTTTCT
AAATAAAGTT GACGCTGTTG ATGATCCAGA GTTGTTAGAG CTTGTAGAGA TGGAGCTACG TGAGCTTCTG AGCTTCTACA
AGTTCCCTGG GGATGAAATC CCGATCATCA GAGGTTCAGC CTTGTCTGCT TTACAAGGTA CAAATGACGA GATTGGAAGA
CAAGCGATTC TAAAATTAAT GGATGCTGTA GACGAATACA TTCCTGACCC TGTTCGCCAA CTTGACAAGC CTTTCTTAAT
GCCAATTGAA GATGTGTTCT CAATTCAGGG GCGAGGAACA GTTGCCACTG GCCGTGTTGA ACAAGGCGTC ATTAAAGTAG
GTGAAGAAGT GGAGGTGTTG GGTCTAATGC AGGGTGGTCC TCTGAAAACA ACAGTAACTG GAGTTGAGAT GTTCAAGAAG
ATTTTGGATC AAGGACAAGC GGGTGACAAT GTTGGTCTTC TTCTCCGTGG TCTGAAGCGT GAAGATATTC AACGTGGTCA
GGTGATTGCA AAGCCAGGTT CTATAAAAAC ATACAAGAGG TTTGAGGCAG AGATATATGT ACTCACAAAG GATGAGGGTG
GCCGACACAC CGCATTCTTC TCTAACTATA GACCTCAGTT TTACTTGAGG ACAGCTGATA TCACTGGAAA AGTAGAGTTG
CCTGAAAATG TTAAGATGGT TATGCCCGGA GACAACGTTA CAGCTGTGTT TGAATTGATT TCAGCAGTTC CACTTGAAGC
GGGACAAAGA TTTGCCTTGA GAGAAGGCGG CAGAACAGTT GGTGCAGGTG TGGTGTCAAA AGTACTGAGC TAG

>Vigan.04G294800.01
MATLLLRHSS STSRRLFPLA SQIHSSVSRS PLSTPNDSTT SSSYSFNSHP WWRSMATFTR TKPHVNVGTI GHVDHGKTTL
TAAITKVLAD EGKAKAVAFD EIDKAPEEKK RGITIATAHV EYETAKRHYA HVDCPGHADY VKNMITGAAQ MDGGILVVSA
PDGPMPQTKE HILLARQVGV PSLVCFLNKV DAVDDPELLE LVEMELRELL SFYKFPGDEI PIIRGSALSA LQGTNDEIGR
QAILKLMDAV DEYIPDPVRQ LDKPFLMPIE DVFSIQGRGT VATGRVEQGV IKVGEEVEVL GLMQGGPLKT TVTGVEMFKK
ILDQGQAGDN VGLLLRGLKR EDIQRGQVIA KPGSIKTYKR FEAEIYVLTK DEGGRHTAFF SNYRPQFYLR TADITGKVEL
PENVKMVMPG DNVTAVFELI SAVPLEAGQR FALREGGRTV GAGVVSKVLS *