GBrowse Details

Vigan.04G286400.01

Basic Information:
Name: Vigan.04G286400.01
Multiple alignment
Variant Information
Position: Chr04:40882018..40886652 (- strand)
Length: 4635
Functional Information:
Description: Similar to Uncharacterized protein. [I1N972, Glycine max]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:24.01,24.79,6.15,6.42,8.97,6.11,8.78,5.00
Automatic updates:
Name: NM_001254129 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max heterogeneous nuclear ribonucleoprotein A/B-like (LOC100776344), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:40882018..40882539 (- strand)
Length: 522
Type: three_prime_UTR
Position: Chr04:40882540..40882887 (- strand)
Length: 348
Type: CDS
Position: Chr04:40883593..40883668 (- strand)
Length: 76
Type: CDS
Position: Chr04:40884203..40884399 (- strand)
Length: 197
Type: CDS
Position: Chr04:40884927..40885070 (- strand)
Length: 144
Type: CDS
Position: Chr04:40885289..40885409 (- strand)
Length: 121
Type: CDS
Position: Chr04:40886494..40886618 (- strand)
Length: 125
Type: CDS
Position: Chr04:40886619..40886652 (- strand)
Length: 34
Type: five_prime_UTR

>Vigan.04G286400.01 class=Sequence position=Chr04:40882018..40886652 (- strand)
GAGGTGTTGA GTGGAAGAAG GTGGAGAAGA AGACATGGAA GATTTGAAGA AGAGAAAACT GGACGAAGCA GGAAACGGTG
ATTTTGCCTC CAAGGAAGAA CTTCGCTTCC TCATTGAACC TCTTGCAAAA CCCCAGCTTG TTGATCTTCT AGCTAAATTG
TGCGTTTCAT ATTCTCAATT CCACTTCTTT CCTTCTTCAA CTTCTTTCTT TTTCCGTCAT CCTCTCCGAG CAATCAGTTT
CCCCATGCTT TTTTGCTATC TTTTTTCGCT TTCATCCGTT GGTATTGCAG TTCTTTCATT GAATTGTGTA TTTTAATTTT
GAATTGGCTC GTGTGGAACT TGTATCTTGT AGTAGTGTCC TTTGGGGACT GTAATATATA GTTTTTTAAC CTTGTTGGAT
TTGTGAGTAT GTGGTAAAGT TTGGAATTGC AGGATTTGGC CTTAAAATTG TTGAAGCATG GGTCTTTAGG AATTAGCATT
TTTTTTTCAC TGTTTCACCA TTGACACGGT CCTCGGAATA ATTTCAAACT TAATTTTTGT CCCTTTTTCT AAGTACAGAT
TGAAATATGG ACAACCATAA CAATTTCCTC CTTCTTGCAT TCCATTAAGC TGTCTCACCC CCATTGCCAG CTGTTTCTTG
TTGTGGGGAT GAAAGGTGGT GTTTGGCATA TAATCTAGGC TGTAGTTAAT GACTTAGTGC TGACCCAGAC CCAGTGCACT
TTGTTGTCAT AGTTCTAGAA GGGTGACCCA TAACATAGTG GGATTGGAGG AGGAAAGAAG CATATGACAT TATCCTTGCA
ATTTGTGGAT TTGAACCTTA TGTGTCTAGG ACACAAGGCA GTGTCCTTAC TAGTTACTGG TGTGCCAAGG CTTGTCATCT
CAGGGCATCA TGGTTGTTAA TTGACAAATT TAGCATTATT ATAATTATGA CTAGATGAAA CAAAAATCGA CCATTTGTAC
CTAAAACATT AAAATAAAAT CAATAAATGC TTGGTGAAAA TAATTTTTTC TACTTTGAGG CGGGTATTAA TTTTCTGCTT
CAGTTTCTCA GAAAAGAATC CTTTTTTGGG CATTGCTTTA CATTTGTGTG TATACAATGT GCAGTTGTCA TCTTTGAATT
GTTGGTACCT TCTGCTTGCT TGGTGTGCTT TGCATAAAAA GGGGCCAAAA GAAATTGCTC CCACTTGTAT GCTGTGTGAT
TGACCGTGTG CATGTGTGTT TGTTTTCATG TTGAGGCATA AAGAGGGTCC CAATATCCTT CAATTGCAGA AGAAATAAAA
AGTATTGCAA GTGCTGATCC TGCCCATCGA AAGCTTTTTG TTCGTGGCTT GGCATGGAAT ACCAATTCAG AAACTTTGCG
TGCTGTGAGT GCATTGGTGA TTGTGTTTAG TGTGTCATGC ATGTGATTGC TTCCATGTCA CATGGAATCT GCCCAACAAA
ATTTATTTTC TAGAGCTCCA AATTTTTGTC CCTGTATTTC CCACCCTGTA CCTTGTCTCT GGCTCGAGCC TTGAGAGCTA
AAAAAAATGA AAAATTCTTT CTTCTCTGTA TGTTGCCTCT TATACATTGC TTATTTTTCC AGGCATTTGA AGAGCATGGA
GAAATTGAGG AAGGAGCTGT GATCTATGAT AAGGTAACAG GGAAGTCCCG TGGCTATGGA TTTATTACTT TCAAAAATAT
GGAATCAACT CAGCAAGCAT TGAGAGCTTC TAGCAAGTTA ATTGATGTAA GCTTTGCCGC ATTTTATTGC TTTGGATTTT
TATCTCTTAT ATACATGAAT CTGCAGTTTT GCTTTAGCAA CATCATGGTA TCTGAGTTTG CCTCTTTGAA TCTCTTAACT
TGCCAATCCC AATACACCCA AACTATGAAA TGTATCAGGA AGATTATTTT GTATGTGGTT CTTTGTTGAG GGAGCTTATT
TTCTGGTAGC AAACAACCTG TAATCAGGGT TTGTGCACTT TTCTCAATAC TTCTCATGTT GAAGAATCCA ATTTACGTTT
ACCTACCTTG TACTGTTGAG AAACATTCAG GCCTAGTGAC ATTTCTTAAA CCTTAGGGCC TAAGGTCGAA AATACACAGG
AAGGTTATTT GTGATTTGTA TTTTCTTTAT TCTTATAGAT TTTAGTAGTT TAGTTGTGTA GGTGCTGTCC TTCCTAAACC
CCCAAAAAAT GAAAAACTAT TAATATGTGT GAAACTGTCT GCAGCTGTCA TTCCGACATT TCCCTGATTG ATTGTAGAAA
TTTGTGTTTT CAGGGAAGAT TGGCTGTCTG TAATCTAGCC TGTGAGGGTC TAAGTGGAAC AAGTAGTGCT CCTGATGTTT
CCCTGAGGAA GCTTTATATA GGAAGCTTAT CACCAGAAGT CACAAGTGAA CTGCTGCTCA ACTATTTTGC GAGGCATGGT
GAAATAGAAG AAGGTTCAGT TGCATACGAC AGGGATACAA ATGAATCACG GTAAAAGCAA CACGTATTAC TTGGATACAA
ACTTTATAGT CTTTTTAATT TCCATGAGAG AAGCTCGATT GCCTGAGAAA GATAGTTGTT AATTTGTTAC CCCAGCCCAC
TTAAGTATGT ATTCATGTAT TCATTGGTGG AGAGCATCCA GTGTTGCTTT TGAAAAAATC TATTTGTGCT CACTTTAGTA
GCTCAGAAAC GGGTTGTCAG GAATGGCTTT GATTATTTTT CTTTTAAAGA AAATGGTTTA TATAGAGCAA CGCTCATATA
TAGAGCTCTG CCTATATATT TGCAACAGTC ACATAGGGAA AAACTATATG TTAATTGTAT GTTCTCTGAA ATTATCAATT
TCATATATCT ATTTTTGTGC CGATTTGTTC TGTCGAAGTC TCAATTTGAA GTTCCACAAT TTTGTTCTCT GAATTATCAA
CTTCAAAAAA TCATGTTTAA CAACCTATTT CATCTATGTA TCGGTAATTC TCTGAGTTGT TTTCTTACTG TAACGTGTTA
TTATTGTTTT ATTTCCAACT GTAGTGGCTT TGGCTTTGTC ACGTACAAGA CAGCAGAAGC TGCCAAGAAG GCCATAGATG
ATCTTGAAAA GACTCTTGGG GTAAGCAAAC GCTTCATATT TTATATCAAG TCCGAGGTTA GCTGTTAGAG TGGGACCTGT
TTATTTCTGT GCTTAAAAAT GTCTTGGATG TGACAATAAG AAATGGAAGA TCATTGAAAA AGGCATCTTA ATTATACGGT
AAAGAAAAAG TAATAAAATA TGGTGATTTA CACACTTTTA GGCTGCATAT TAGACTATAG GGTTAAATAA TTTTTTTATA
TTTCCAAATT TACCCCTATT GAAATTGGTT TCTCTTAAAA TATTTTGGTG TTTTTGATTC TCAACCTTTA ATAAATATGT
TCTCAGGTCT TGATAGTAAC TATGTTGCTC TTAAACTAAG AATGTTGATA TTTGCAAGGA TGATAGCATC TGACACTAGA
AAATTAGTAC GTTTATATTA TTAATTTACA AGTAACAGAA ACAAAGATTT TGGGGATACC AAAATTTATT CAACCTACAT
CTGAATTTGT TTTTATGTTT AACCCTACTT ATGACTAAAA TACAAACTCC TACCATGTAG TATATTGGAA GGAGATTCTT
TCCCTAATTG GTAATTATCT AACTAGACAA TAAACTAGCA TGATCAATAA CAATCTCATG TGTTTTGATT GCAGGCAGTT
GTTATATTTT TTAATGGAAA TTGCAATTCA TATTGAAGCT GTATAAATTT TGGAAGTTAT GACATGTTAC TTGTTTTGAT
TGCAGGGAAG GAATATAATT GTAAAATATG CTGATTCCAA CAAAGGAAAA ACTGGGCAGC CGCCATTTCC CTCTGGAGTG
GTTCCAATGG CTGGCTTACC TATGACCACA GGCTATATGC AGCCTGGTAA AGCTCATGTA AGCTCTGGCC ACCCTATAAA
TTACAATTAC CCCCAAACTG TTGTACCGTA TTCCGCATCT CCTTATCCAA ACCCTCACAT TGTACCTTCT CCTTATCCAA
CACAAGGGCA GATTCCTTAC CCTCCTCTTT CTGCAAAGAA AGACCAACAT GGGTTTCCGC CTACCCAACC TGTAGGAATG
AACAACTACC CTTATTACTA TCCCAAGCAA TGAATGCATT TAACTGAATC TGATGATTTT GACACTCCCT CTCTTTGCTT
TTCTTTTCGA ATCATTTTAG CTATTAGTTA CCTCTCATAT CATAAGTCAT CACATCACCT GTTAATGAAC CTCTGCATCC
TCTCTTTACA GCTTTTCATC TAGTTGATTT TTGGCATTCT TATTTATTAC TGTAATATTG ATTAGAAATT TTTTATATGT
ATTTTTTTTC TGAATATCTT GAACGGGAGC AACATTTTTT TGTTTTTGCA TTTAAGTTAC CTTTGAATTT GCTACTCTTG
AGTGTGGTTT ATTTAGCCTC GCTGGACGGC TTACATTTAT AAAATTTTCA CCCCTTCCCC TGTTTGACAT TTGTTCATGA
ATCACACCAC ATGGTCGCTG TTGCAGGGAT GTCCATCAGG TGGCTCCTAC TACGCAGAAT CCATTCCCAT TCCTTGTTGT
TTTTGAACTT TAATGAAAAT AGACTTGGAA AATTGTGTAG TAAAAAATTA AAATTTTAAA AATACTATAG TGACA

>Vigan.04G286400.01
GAGGTGTTGA GTGGAAGAAG GTGGAGAAGA AGACATGGAA GATTTGAAGA AGAGAAAACT GGACGAAGCA GGAAACGGTG
ATTTTGCCTC CAAGGAAGAA CTTCGCTTCC TCATTGAACC TCTTGCAAAA CCCCAGCTTG TTGATCTTCT AGCTAAATTA
GGGTCCCAAT ATCCTTCAAT TGCAGAAGAA ATAAAAAGTA TTGCAAGTGC TGATCCTGCC CATCGAAAGC TTTTTGTTCG
TGGCTTGGCA TGGAATACCA ATTCAGAAAC TTTGCGTGCT GCATTTGAAG AGCATGGAGA AATTGAGGAA GGAGCTGTGA
TCTATGATAA GGTAACAGGG AAGTCCCGTG GCTATGGATT TATTACTTTC AAAAATATGG AATCAACTCA GCAAGCATTG
AGAGCTTCTA GCAAGTTAAT TGATGGAAGA TTGGCTGTCT GTAATCTAGC CTGTGAGGGT CTAAGTGGAA CAAGTAGTGC
TCCTGATGTT TCCCTGAGGA AGCTTTATAT AGGAAGCTTA TCACCAGAAG TCACAAGTGA ACTGCTGCTC AACTATTTTG
CGAGGCATGG TGAAATAGAA GAAGGTTCAG TTGCATACGA CAGGGATACA AATGAATCAC GTGGCTTTGG CTTTGTCACG
TACAAGACAG CAGAAGCTGC CAAGAAGGCC ATAGATGATC TTGAAAAGAC TCTTGGGGGA AGGAATATAA TTGTAAAATA
TGCTGATTCC AACAAAGGAA AAACTGGGCA GCCGCCATTT CCCTCTGGAG TGGTTCCAAT GGCTGGCTTA CCTATGACCA
CAGGCTATAT GCAGCCTGGT AAAGCTCATG TAAGCTCTGG CCACCCTATA AATTACAATT ACCCCCAAAC TGTTGTACCG
TATTCCGCAT CTCCTTATCC AAACCCTCAC ATTGTACCTT CTCCTTATCC AACACAAGGG CAGATTCCTT ACCCTCCTCT
TTCTGCAAAG AAAGACCAAC ATGGGTTTCC GCCTACCCAA CCTGTAGGAA TGAACAACTA CCCTTATTAC TATCCCAAGC
AATGAATGCA TTTAACTGAA TCTGATGATT TTGACACTCC CTCTCTTTGC TTTTCTTTTC GAATCATTTT AGCTATTAGT
TACCTCTCAT ATCATAAGTC ATCACATCAC CTGTTAATGA ACCTCTGCAT CCTCTCTTTA CAGCTTTTCA TCTAGTTGAT
TTTTGGCATT CTTATTTATT ACTGTAATAT TGATTAGAAA TTTTTTATAT GTATTTTTTT TCTGAATATC TTGAACGGGA
GCAACATTTT TTTGTTTTTG CATTTAAGTT ACCTTTGAAT TTGCTACTCT TGAGTGTGGT TTATTTAGCC TCGCTGGACG
GCTTACATTT ATAAAATTTT CACCCCTTCC CCTGTTTGAC ATTTGTTCAT GAATCACACC ACATGGTCGC TGTTGCAGGG
ATGTCCATCA GGTGGCTCCT ACTACGCAGA ATCCATTCCC ATTCCTTGTT GTTTTTGAAC TTTAATGAAA ATAGACTTGG
AAAATTGTGT AGTAAAAAAT TAAAATTTTA AAAATACTAT AGTGACA

>Vigan.04G286400.01
ATGGAAGATT TGAAGAAGAG AAAACTGGAC GAAGCAGGAA ACGGTGATTT TGCCTCCAAG GAAGAACTTC GCTTCCTCAT
TGAACCTCTT GCAAAACCCC AGCTTGTTGA TCTTCTAGCT AAATTAGGGT CCCAATATCC TTCAATTGCA GAAGAAATAA
AAAGTATTGC AAGTGCTGAT CCTGCCCATC GAAAGCTTTT TGTTCGTGGC TTGGCATGGA ATACCAATTC AGAAACTTTG
CGTGCTGCAT TTGAAGAGCA TGGAGAAATT GAGGAAGGAG CTGTGATCTA TGATAAGGTA ACAGGGAAGT CCCGTGGCTA
TGGATTTATT ACTTTCAAAA ATATGGAATC AACTCAGCAA GCATTGAGAG CTTCTAGCAA GTTAATTGAT GGAAGATTGG
CTGTCTGTAA TCTAGCCTGT GAGGGTCTAA GTGGAACAAG TAGTGCTCCT GATGTTTCCC TGAGGAAGCT TTATATAGGA
AGCTTATCAC CAGAAGTCAC AAGTGAACTG CTGCTCAACT ATTTTGCGAG GCATGGTGAA ATAGAAGAAG GTTCAGTTGC
ATACGACAGG GATACAAATG AATCACGTGG CTTTGGCTTT GTCACGTACA AGACAGCAGA AGCTGCCAAG AAGGCCATAG
ATGATCTTGA AAAGACTCTT GGGGGAAGGA ATATAATTGT AAAATATGCT GATTCCAACA AAGGAAAAAC TGGGCAGCCG
CCATTTCCCT CTGGAGTGGT TCCAATGGCT GGCTTACCTA TGACCACAGG CTATATGCAG CCTGGTAAAG CTCATGTAAG
CTCTGGCCAC CCTATAAATT ACAATTACCC CCAAACTGTT GTACCGTATT CCGCATCTCC TTATCCAAAC CCTCACATTG
TACCTTCTCC TTATCCAACA CAAGGGCAGA TTCCTTACCC TCCTCTTTCT GCAAAGAAAG ACCAACATGG GTTTCCGCCT
ACCCAACCTG TAGGAATGAA CAACTACCCT TATTACTATC CCAAGCAATG A

>Vigan.04G286400.01
MEDLKKRKLD EAGNGDFASK EELRFLIEPL AKPQLVDLLA KLGSQYPSIA EEIKSIASAD PAHRKLFVRG LAWNTNSETL
RAAFEEHGEI EEGAVIYDKV TGKSRGYGFI TFKNMESTQQ ALRASSKLID GRLAVCNLAC EGLSGTSSAP DVSLRKLYIG
SLSPEVTSEL LLNYFARHGE IEEGSVAYDR DTNESRGFGF VTYKTAEAAK KAIDDLEKTL GGRNIIVKYA DSNKGKTGQP
PFPSGVVPMA GLPMTTGYMQ PGKAHVSSGH PINYNYPQTV VPYSASPYPN PHIVPSPYPT QGQIPYPPLS AKKDQHGFPP
TQPVGMNNYP YYYPKQ*