GBrowse Details

Vigan.04G264400.01

Basic Information:
Name: Vigan.04G264400.01
Multiple alignment
Variant Information
Position: Chr04:38483580..38487494 (- strand)
Length: 3915
Functional Information:
Description: Similar to Pyrroline-5-carboxylate reductase. [Q9AYM3, Vigna unguiculata]
GO: Biological Process: proline biosynthetic process (GO:0006561)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: pyrroline-5-carboxylate reductase activity (GO:0004735)
InterPro: Pyrroline-5-carboxylate reductase (IPR000304)
6-phosphogluconate dehydrogenase, C-terminal-like (IPR008927)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.10,8.77,17.54,4.71,36.76,21.43,12.39,9.03
Arabidopsis thaliana homolog: AT5G14800.1
Automatic updates:
Name: NM_001248985 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pyrroline-5-carboxylate reductase (AA 1- 274) (LOC547907), mRNA.
PubMed ID: 2199815 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:38483580..38483826 (- strand)
Length: 247
Type: three_prime_UTR
Position: Chr04:38483827..38484009 (- strand)
Length: 183
Type: CDS
Position: Chr04:38484715..38484820 (- strand)
Length: 106
Type: CDS
Position: Chr04:38485200..38485320 (- strand)
Length: 121
Type: CDS
Position: Chr04:38486199..38486271 (- strand)
Length: 73
Type: CDS
Position: Chr04:38486759..38486850 (- strand)
Length: 92
Type: CDS
Position: Chr04:38486927..38486975 (- strand)
Length: 49
Type: CDS
Position: Chr04:38487057..38487257 (- strand)
Length: 201
Type: CDS
Position: Chr04:38487258..38487494 (- strand)
Length: 237
Type: five_prime_UTR

>Vigan.04G264400.01 class=Sequence position=Chr04:38483580..38487494 (- strand)
AAACACTCAA AGAATCTATT TAGATAAATA AAGTGTTAGT GGGTCCTGAT GTAAAATGGG GGCTACAGCA GAAAAAATTT
CCAAATTGAA TATGCAAGTG TAACAACAAA CCAAAAAACT GGAAGTGGAA GAGTGGCCAA ACCAAACCAA TCAACGTGAC
TGCGTCACTT CTCTTCTTTC TCTGTTTCCC TATTTCAGTT TCAGATCCAA ACTGATTTCT CTGCCAAGTA ACCCAAAATG
GAAATCGCTA GCATTCCCGC CGACACCTAC ACTCTCGGTT TCATCGGCGC CGGAAAAATG GCCGAGTCCA TTGCCCGCGG
TGCCGTTCGC TCCGGTGTTC TGCCGCCTTC TCGCATTCGC ACCGCTGTAC ACTCCAATCC CGCGCGCCGC ACAGCGTTCG
AATCATTCGG GGTCACCGTC CTCTCATCGA ACGACGACGT ATTACCGTTC CCTCTCCTTT TCTTTTGTCT CTTAAACAAA
CGTCACGCCG TTTTCACTCC TTTTTCTTCA CACTCGTAGG TCGTGCGCGA AAGCAACGTC GTCGTTCTAT CGGTCAAACC
TCAATTAGGT ATTGTTGTAC TCTCTCCCGG TCATCATGCG TATTCGACTT GCGATTTCAT TTACTTCTCT GTGTATTGTT
GTAGCGAAAG ACGTGGTGTC GAAATTGAAG TCGATAATCA CGAAGGATAA GCTTTTGGTT TCGGTGGCTG CTGGCGTCAA
GTTGAAAGAT CTTCAGGTAA CGAATGCAAT GTATTTTTTT TTCTTCTTTT TTGCTTTTGT GTACTTTGTT GTGTAGACTG
TAATTTTAGT GGGAACTGAA CGTGTTTCTA TTTTATGATT ATACTAACAA AAAAGAAAAA AGAAAATGAT TTAATTTAAA
TGCACTGATA CTGTAAAGGT GTTTTTCACT GATCAAATCA CAAATCCATC CTCTCCGCTG TAAGTTTATT GACTTTTACA
TTTTACAGTG CATCACAATT AAACTCGTAA TGAGAGAATA AAAGATTGGT TTCACTCTTT TATTTGGATC AAGTTTCGAA
AATAAGAAAC AAAATAAAAA TAAGGTGATA TTTTTGTATT CAAAAGTTAA AAGAGGAAAT GAAAACTAAA AATACTTTCC
GAGACCAAGC AAACATACTA CGCATGGGTT TGTGCAAGTA GCCTTTCTCA AATATAATCA GGTTGTATAA TTTTACGGAA
AACGGTTGTT ACATAAAATG TAGGAATGGG CAGGGAGTGA CAGATTTATA AGGGTGATGC CTAATACACC TGCTGCAGTT
GGCGAGGCAG CATCAGGTAT TATCCCATTT TCCCTCTACT TTTAAAAGCA TAGTGATCCT CTATTACTTT TATATGCAGA
ATGTTGAGAA TGTATGATGC ATGAATTATT TGTACAACTT CGTAGTTCTG TAACTGACTG TGAATTCTAA ATTGTCAATT
ACTGCTTAAT TTCTCTCTGT TCAAGAGTTT TGATAGAACA TTCAATTTTT GTCTGCAACT TGAAAGTGGT GGTGGAATTA
ACTCGGTTTA TTGATAATAT AGCATTTAAA CTTATCAGTA CTAAAACTAC ATAGTGAAAA ACATAATTTT CCGTTATAGT
CTGTGACTGT TTCGGTTAGC TGGTGGGATA TTTTGAACAC TCTTTGGTAC TAGAATTGTC TAATAAAAGG CTTGTTTTGT
GATGCTAATG CTCTGTTTTA TAGAGTCTAC AGCTTATAAT GGAACTACAT TTAGAACTGG CTGGCCTTTA ATATTCATAT
TGTTTGATGT TTATATATTG TTTGTATTTT TATGCATCTT TGTAATGGAG CTCTTTCATG TGATAGAAGT TGCACATGAT
TTATGATAAT AGTGTGAGTG CTTTTGCCTA TTATGAAGGC TGCTATTGTT TATATATTGT CTCTGATGTG TACATTTGTT
ATAGTTTGAT CGTGTAGTCT TAGCATGTCT TTTTTTTCTT CATTTGGATG CGTAAATTAT ATGGGTAAAT AATCTCAATT
ATGGATAAAT TACAAGGTTA AGAATGCTTT CTCTTGCATA TTGTGGTAAT TCTGGACCTT GTATGTTATT TTACAACTCG
ATGGATATTC TTATTGCATT TCTTTCTGCA TTAATTTGCA TTGTTGAGAA TTTCAGACTT GAATGAATAG ATAACTAAAA
CCAAACTATG ACAGTTATGA GCTTGGGGGC AGCTGCAACA GAGGAAGATG GAAATATTAT AGCTAAATTG TTTGGGTCGA
TCGGCAAAAT ATGGAGAGCT GAAGAAAAAT ATTTTGATGG AATAACTGGC CTGAGGTATG TAGATATCAT TTCTAAAATC
ACTGAATGAT AATATTATTC GAGAAATCAA CAAGAAATTT CATTTCGTCT CTGATAAACA TGTTTCTTTT GAGATAAGTG
ATGATATTAG TGCAAGGTTA GAGGATAAGG ACGGGTTAAG ATGTTGGTAT GCTATTCCCG TGCAATTGAA GCTATTTACG
TTTACTCATT ACTATTACGT TTGTACTTTG AATCCCTATT ACCATTGTAA ATCATTTCCC CCTGTTCAAG TGATATGTGA
GCCTTGCTCC TAATTTCCAG ATTTTGTCTT GGAATAGCTT CCGAGTTCTG TGACAGACAT ACCAAATTTT GATGTACTTA
CAAAAACTTC TTTTATTTTT CCTGAATTGT TCAGTGGTAG TGGTCCTGCG TACATTTATT TAGCAATAGA AGCTTTGGCT
GATGGAGGAG TAGCAGCTGG TCTACCACGT GATCTTTCAT TAAGTCTAGC TTCTCAAACT GTAAGTGAAC TGAAATGCTA
TCCTTCGACC ATTTAACAGT TAATTTTGTA CTTCATTTCT CCGAATGTTT ATAATTTATG TGATGCATGC TTTTTGCGTT
GTCTTATATT GCTATTTTAT CATAAAATCC AGATATAATA AGTAATATTT AGAACGCACA AAATATGTTG CAATTATTAG
ACAAGTTGAA GATTGGTTGT TTCTTTGTGT TTTTGTTAGC TTTACTGTGT ATGTTCGTTC TATACTTGAT GAAGATCTCC
AACAACAACG AATCACAAAT TGTATCCGAG TAATATACCA AGTGCACTAT ATGTTGCTGT TTACTGTACA GTGTTTACTT
TACAAATTGG ATTCAAGCAA TGTACGAAGT GTCCTCCTCT ATATTGCTGT GCTTACTTGA CAGGTTGAGC AAATTAATCA
ACCGGATTTA TGGAAAAGCC TTCTCCCACT GTAGTGCATC CAAATTGATT TGACCCATAC TTACACCCGC CCACAATTTT
TTTTACTGGT TTTGATTAAA CAACACATTG CCTGCGCATA GGCATATATG CCTGTATTAC AAACTGACAA AAAGATAAAT
AAGTAATGAT ACAGTTACTG TTGTTTGAAT ATGCAAGCAA GTATCCTCTG AACATTAGAT TACCTACATT ATAAATCTCG
TTTCTAAAGT TGCATGCATG ACTAGTCTAT TTGTGTCGTT GGCAGGTATT GGGGGCAGCA TCAATGGTGA CACAGACTGG
GAAGCACCCG GGCCAACTCA AGGATGACGT TACTTCTCCC GGTGGGACAA CAATTACGGG CATTCATGAA TTAGAAAATG
GTGGGTTCCG TGGAACACTG ATGAATGCTG TTGTTGCTGC TGCTAAGCGC AGCCGCGAGC TTTCTTGAGT GTAGAGATTA
GTATTTACCT TTTTAAGATA AAATCAGATT TTGGCAGAAT TTTCAGTTTA TTTGAACTTT GGTGTAGGAG TTATTTAGTT
CGGGCTAGCA TCATGTATGT GTATGTCTGT TTGATGTTAA AAGTATAAAT AAAACACTTG GCCTCGAAGA TAAGAGTTGC
ATTCTTCTGG ATGCATTTTG TCTCTAATCT TTCTGAATTT CTTCTATTTA CATGCTGAAA ATGAAACTAA ACGTT

>Vigan.04G264400.01
AAACACTCAA AGAATCTATT TAGATAAATA AAGTGTTAGT GGGTCCTGAT GTAAAATGGG GGCTACAGCA GAAAAAATTT
CCAAATTGAA TATGCAAGTG TAACAACAAA CCAAAAAACT GGAAGTGGAA GAGTGGCCAA ACCAAACCAA TCAACGTGAC
TGCGTCACTT CTCTTCTTTC TCTGTTTCCC TATTTCAGTT TCAGATCCAA ACTGATTTCT CTGCCAAGTA ACCCAAAATG
GAAATCGCTA GCATTCCCGC CGACACCTAC ACTCTCGGTT TCATCGGCGC CGGAAAAATG GCCGAGTCCA TTGCCCGCGG
TGCCGTTCGC TCCGGTGTTC TGCCGCCTTC TCGCATTCGC ACCGCTGTAC ACTCCAATCC CGCGCGCCGC ACAGCGTTCG
AATCATTCGG GGTCACCGTC CTCTCATCGA ACGACGACGT CGTGCGCGAA AGCAACGTCG TCGTTCTATC GGTCAAACCT
CAATTAGCGA AAGACGTGGT GTCGAAATTG AAGTCGATAA TCACGAAGGA TAAGCTTTTG GTTTCGGTGG CTGCTGGCGT
CAAGTTGAAA GATCTTCAGG AATGGGCAGG GAGTGACAGA TTTATAAGGG TGATGCCTAA TACACCTGCT GCAGTTGGCG
AGGCAGCATC AGTTATGAGC TTGGGGGCAG CTGCAACAGA GGAAGATGGA AATATTATAG CTAAATTGTT TGGGTCGATC
GGCAAAATAT GGAGAGCTGA AGAAAAATAT TTTGATGGAA TAACTGGCCT GAGTGGTAGT GGTCCTGCGT ACATTTATTT
AGCAATAGAA GCTTTGGCTG ATGGAGGAGT AGCAGCTGGT CTACCACGTG ATCTTTCATT AAGTCTAGCT TCTCAAACTG
TATTGGGGGC AGCATCAATG GTGACACAGA CTGGGAAGCA CCCGGGCCAA CTCAAGGATG ACGTTACTTC TCCCGGTGGG
ACAACAATTA CGGGCATTCA TGAATTAGAA AATGGTGGGT TCCGTGGAAC ACTGATGAAT GCTGTTGTTG CTGCTGCTAA
GCGCAGCCGC GAGCTTTCTT GAGTGTAGAG ATTAGTATTT ACCTTTTTAA GATAAAATCA GATTTTGGCA GAATTTTCAG
TTTATTTGAA CTTTGGTGTA GGAGTTATTT AGTTCGGGCT AGCATCATGT ATGTGTATGT CTGTTTGATG TTAAAAGTAT
AAATAAAACA CTTGGCCTCG AAGATAAGAG TTGCATTCTT CTGGATGCAT TTTGTCTCTA ATCTTTCTGA ATTTCTTCTA
TTTACATGCT GAAAATGAAA CTAAACGTT

>Vigan.04G264400.01
ATGGAAATCG CTAGCATTCC CGCCGACACC TACACTCTCG GTTTCATCGG CGCCGGAAAA ATGGCCGAGT CCATTGCCCG
CGGTGCCGTT CGCTCCGGTG TTCTGCCGCC TTCTCGCATT CGCACCGCTG TACACTCCAA TCCCGCGCGC CGCACAGCGT
TCGAATCATT CGGGGTCACC GTCCTCTCAT CGAACGACGA CGTCGTGCGC GAAAGCAACG TCGTCGTTCT ATCGGTCAAA
CCTCAATTAG CGAAAGACGT GGTGTCGAAA TTGAAGTCGA TAATCACGAA GGATAAGCTT TTGGTTTCGG TGGCTGCTGG
CGTCAAGTTG AAAGATCTTC AGGAATGGGC AGGGAGTGAC AGATTTATAA GGGTGATGCC TAATACACCT GCTGCAGTTG
GCGAGGCAGC ATCAGTTATG AGCTTGGGGG CAGCTGCAAC AGAGGAAGAT GGAAATATTA TAGCTAAATT GTTTGGGTCG
ATCGGCAAAA TATGGAGAGC TGAAGAAAAA TATTTTGATG GAATAACTGG CCTGAGTGGT AGTGGTCCTG CGTACATTTA
TTTAGCAATA GAAGCTTTGG CTGATGGAGG AGTAGCAGCT GGTCTACCAC GTGATCTTTC ATTAAGTCTA GCTTCTCAAA
CTGTATTGGG GGCAGCATCA ATGGTGACAC AGACTGGGAA GCACCCGGGC CAACTCAAGG ATGACGTTAC TTCTCCCGGT
GGGACAACAA TTACGGGCAT TCATGAATTA GAAAATGGTG GGTTCCGTGG AACACTGATG AATGCTGTTG TTGCTGCTGC
TAAGCGCAGC CGCGAGCTTT CTTGA

>Vigan.04G264400.01
MEIASIPADT YTLGFIGAGK MAESIARGAV RSGVLPPSRI RTAVHSNPAR RTAFESFGVT VLSSNDDVVR ESNVVVLSVK
PQLAKDVVSK LKSIITKDKL LVSVAAGVKL KDLQEWAGSD RFIRVMPNTP AAVGEAASVM SLGAAATEED GNIIAKLFGS
IGKIWRAEEK YFDGITGLSG SGPAYIYLAI EALADGGVAA GLPRDLSLSL ASQTVLGAAS MVTQTGKHPG QLKDDVTSPG
GTTITGIHEL ENGGFRGTLM NAVVAAAKRS RELS*