GBrowse Details

Vigan.04G261000.01

Basic Information:
Name: Vigan.04G261000.01
Multiple alignment
Variant Information
Position: Chr04:38017567..38021223 (+ strand)
Length: 3657
Functional Information:
Description: Similar to auxin efflux carrier protein. [W6JLB4, Phaseolus angularis]
GO: Biological Process: transmembrane transport (GO:0055085)
Cellular Component: integral to membrane (GO:0016021)
InterPro: Auxin efflux carrier (IPR004776)
Auxin efflux carrier, plant type (IPR014024)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,1.54,2.79,0.68,3.74,3.91,9.66,2.70
Arabidopsis thaliana homolog: AT1G23080.1, AT1G70940.1, AT1G73590.1, AT2G01420.2, AT5G57090.1
Automatic updates:
Name: NM_001329816 NCBI(nuccore)
Organism: Vigna angularis
Description: Vigna angularis probable auxin efflux carrier component 1b (LOC108326789), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001398401 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max auxin efflux transporter family protein (LOC100802041), mRNA.
PubMed ID: 26572792 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:38017567..38017922 (+ strand)
Length: 356
Type: five_prime_UTR
Position: Chr04:38017923..38019024 (+ strand)
Length: 1102
Type: CDS
Position: Chr04:38019699..38019969 (+ strand)
Length: 271
Type: CDS
Position: Chr04:38020050..38020135 (+ strand)
Length: 86
Type: CDS
Position: Chr04:38020229..38020386 (+ strand)
Length: 158
Type: CDS
Position: Chr04:38020502..38020578 (+ strand)
Length: 77
Type: CDS
Position: Chr04:38020665..38020731 (+ strand)
Length: 67
Type: CDS
Position: Chr04:38020732..38021223 (+ strand)
Length: 492
Type: three_prime_UTR

>Vigan.04G261000.01 class=Sequence position=Chr04:38017567..38021223 (+ strand)
GCCCTCTTCC TCCTTTCCCT CTCATTCAAA ACTCCTTTTC ATTTCATCCC CCAAAAATAT AATAAAGCTA ATTAATTTTA
TAGATATTTT TGAGTTTATT AACAACTGCA TTCAGCTAAA ATAAAAATAG AAAGTTGCAG CAGTAAGTAG TAAAAGCAGA
AGGAGGTTTT TTGCGTCTTT GCAGCAGCAG AAAAGACTTA TAAAAGCTTC GCAAAAGCCC CCAGCTTTTA CTCCTTTGTC
TCCCATCATA ATGCCATAAA CTACTAAACT AAACCCACTC TCTCTTCTTC CTTCTAAATT CTAACATCTT CAACCTTCTC
CAAAACCACT AACTCAAACC TTATTATTTC CAAACAATGA TAACCTTGTT GGACCTCTAC CATGTTCTCA CCGCGGTCGT
GCCGCTCTAC GTCGCCATGA TACTCGCCTA CGGTTCCGTC AAGTGGTGGA AGATCTTCAC CCCGGACCAA TGCTCCGGCA
TCAACCGCTT TGTCGCTCTC TTCGCGGTTC CCCTACTCTC CTTCCACTTC ATCTCCACCA ACAATCCCTA CGCCATGAAC
TACAAGTTCA TAGCTGCGGA TTCTCTCCAG AAAGCCATAG TCCTTGCCGT CCTCTTCGTC TGGTCTAGAA CCAGCTCGAG
GGGCTCTCTT GAATGGTCCA TCACGCTCTT CTCCCTCTCC ACGCTCCCTA ACACGCTCGT CATGGGTATC CCATTGCTCA
AGGGCATGTA CGGGGACGCC TCGGGGACCC TCATGGTCCA GATTGTGGTG CTTCAGTGTA TCATCTGGTA CACTCTCATG
CTCTTTTTGT TTGAGTATAG GGGTGCCAAG CTTCTCATAG TGGAGCAGTT TCCCGACACT GCCGGGTCCA TTATCTCGTT
CAAGGTTGAC TCTGATATCT TATCGTTGGA CGGGAAGGAA CCGCTTCAGA CTGAAGCCGA GGTTGGTGAC GATGGCAAGC
TTCATGTTAC TGTCAGGAAG TCTACCAGTT CGCGCTCTGA GATATTCTCG CGGCGCTCGC ATGGTCCTAA CTCGGTTTCG
TTGACTCCGA GGCCTTCCAA TTTAACCAAT GCGGAGATTT ATTCGCTTCA GTCTTCGAGG AATCCGACGC CAAGAGGGTC
CAGTTTCAAC CACACGGATT TCTACTCGAT GGTGAATAAT GGGAGGAACG TGAGTCCGAG GCAGAGTAGT TTTGGGGGGG
TGCCGTTTGA TGAGGAGAGT GGTGTGAAGG TTAATGGGGG TGCCGGAGCA TACCCTGCAC CTCACAATGC GGGGATTTTT
TCTCCGGTGG GGAAGAAGAA GGGTGGTGGT GGTGGTGGAG AAGGTGGAGG GAAGGATCTT CACATGTTTG TGTGGAGTTC
GAGTGCTTCT CCGGTGTCGG AGGGTGGGAT CCATGTCTTC AGAGGTGGGG AGTATGGAAA TGACCAACTT CCTGTTGGTG
GGGTGGCTCA CCAGAAAGGT TTGCTTTTTC CCATCCCCTT TTGACTTTTG TTTTCAAAGT TTGTTGTGTC TATGCTTGGT
GCCTGTTCAA ACTGTGTGGA CTTGTTTAAT GTGTTTTTCC GTCATGCATC TTGCAATAAC GTTGCCCGAG TTGGTAGGAC
CATTATGTGA CCTATTTGGC TGGAAGGACA GAAAAGGGAA GAGAAAAAAA GAGAAAATTT GATGTTTTCA ATTACAAAAA
GTATGTTTCT TTCTTTAATT TTCTCCTAAT CTTTGGAAAT TTATGAAGAA ACAAAAAAAT CTGGTTTGAA AATGTGAAAG
CTTTGTCTTT TAAATATTAG CTTTAGTAAA CGGAATAAGC ACGTGGAATC AAACGAGCAA TTTGTTTTCT TTTGACCGTA
GCAAACAGGC CTGTAATCTT GTTCAAATGT GACTTCCATA GTTTTGTTGC GAGTATGCAT CCGTTGTTTT TGTCTCTTTT
GGTTTGGTGT TAAAGTTGGT GTGGGATTTG TTGGACTGAC TTGAACCATG TGTTGTCGTT TCTCGTATAC AATATGTTTT
TTGGTCTGTT AATCCTTGAG TGTATCTGAT ATTTGGTCTT TTCTGGATCC AATAATGGTA ATATTTTGTT TGGGGTTTGT
CATTTTCCCA TGTTTTGATT GGGTGGGTAT TGTTTTCCAC GTTGCTGATC AGATTATGAT GATTTCGGTC ACGACGAATT
TAGCTTTGGG AACAGAACCG TCGCTAATGG AGTGGAAAAG GAAGGGCCAG TACTTTCGAA GCTTGGCTCA AGTTCGACGG
CCGAGCTTCA TCCGAAAGCA CAGGGTGAAT CCAAAGCTAC GTCCATGCCA CCCACAAGTG TTATGACAAG ACTCATTCTG
ATTATGGTGT GGAGAAAGCT GATCAGAAAC CCCAACACAT ATTCCAGCCT CTTTGGTCTC ACTTGGTCTT TGATCTCATT
CAAGTATGCT ATCTATGAGT ATTCCATGTT TCCAACGATT TTAGGTATAC AAGGTGCTAA TGTTGTGCTG TGTTGTGTGG
CAGGTGGAAT GTTGTTATGC CCGCTATCGT TGCTCGATCC ATATCAATTT TATCTGATGC TGGCCTTGGG ATGGCAATGT
TTAGTCTTGG TATGTTTTCT GAGAAATATC AATCAGCATT GTCGTCTAGT TTTGTTATGG TGATATGGTC TTGAGATTTG
AACTCCTTGG TGGGTATTGT AGGGTTATTC ATGGCATTGC AACCAAAAAT TATTGCATGT GGAAACTCGG TTGCTTCCTT
TGCTATGGCA GTTCGTTTCC TCACTGGACC TGCTGTCATG GCTGTCGCTT CAATAGTGGT GGGGCTCAGG GGAGTTCTGT
TGCACATAGC TATTGTACAG GTAAAAGGGT GTCGTGTCGT GTCTCTCAGA CATTTTTTTT TTCTTTGATG TAATATCTGC
TCTCTATTTC GTGGTTTGTT AAGTGTATTC ATTGTTGTAT TGCATGTATT TGTAGGCTGC TCTGCCTCAA GGGATTGTCC
CTTTTGTGTT TGCTAAGGAA TACAACGTTC ATCCAGACAT CCTTAGCACC GGGTTTGTAT TTGTGAACTT GTTATGGTAG
ATTATTGGAT ATGATGTTAG CACTAACTTT GTGTGTTTGG TTGTTTAATA TTTTGCAGGG TTATATTTGG GATGCTAATC
GCTCTTCCTA TCACGCTAGT TTACTACATT TTGCTTGGGC TTTGAAGGAA GGAAAGGAGT AATTGGAGTG GATTACAGTG
CTACCCTTTT GTTATATTTA TAGGTTAATT TTTTTTGGCA TCCTCTAACA ATGTAGAAGT TAGTGAGAGG GGGGGAGTGA
CGTTGTAATC TGCAGAGACA GAAAGAATGG TGAATGGTGG TGGTGTGGTG GAGAGAGTCG GAAGAGAAGG TGATATGATG
ATATATTTTA GGGCTATAGG TAGGTGGGTG GGTAGTAGGA AACTTTTGTT TTGGCGGTTT TAGCCTTTTT ACTGTGAACC
CCACTCTCTT ATATTTTGGT TGGTTTAATG AAAAAGAGAA AGTGAAGATT GTTGGTAGTT GTCGACACCT TTCTCTTTCT
TTTCACAAGT ACTTTTTTTC TAGGCCAAAA GGAGGATCGG GAATCTCGAT CTCTATCTAT CCTATGCTTG CAAGTGGTTT
TGTTTTGTTT TTCTTTTCTT CTAAGGGCAA AAAAAGTGCC AAACCAAACC GAACAGC

>Vigan.04G261000.01
GCCCTCTTCC TCCTTTCCCT CTCATTCAAA ACTCCTTTTC ATTTCATCCC CCAAAAATAT AATAAAGCTA ATTAATTTTA
TAGATATTTT TGAGTTTATT AACAACTGCA TTCAGCTAAA ATAAAAATAG AAAGTTGCAG CAGTAAGTAG TAAAAGCAGA
AGGAGGTTTT TTGCGTCTTT GCAGCAGCAG AAAAGACTTA TAAAAGCTTC GCAAAAGCCC CCAGCTTTTA CTCCTTTGTC
TCCCATCATA ATGCCATAAA CTACTAAACT AAACCCACTC TCTCTTCTTC CTTCTAAATT CTAACATCTT CAACCTTCTC
CAAAACCACT AACTCAAACC TTATTATTTC CAAACAATGA TAACCTTGTT GGACCTCTAC CATGTTCTCA CCGCGGTCGT
GCCGCTCTAC GTCGCCATGA TACTCGCCTA CGGTTCCGTC AAGTGGTGGA AGATCTTCAC CCCGGACCAA TGCTCCGGCA
TCAACCGCTT TGTCGCTCTC TTCGCGGTTC CCCTACTCTC CTTCCACTTC ATCTCCACCA ACAATCCCTA CGCCATGAAC
TACAAGTTCA TAGCTGCGGA TTCTCTCCAG AAAGCCATAG TCCTTGCCGT CCTCTTCGTC TGGTCTAGAA CCAGCTCGAG
GGGCTCTCTT GAATGGTCCA TCACGCTCTT CTCCCTCTCC ACGCTCCCTA ACACGCTCGT CATGGGTATC CCATTGCTCA
AGGGCATGTA CGGGGACGCC TCGGGGACCC TCATGGTCCA GATTGTGGTG CTTCAGTGTA TCATCTGGTA CACTCTCATG
CTCTTTTTGT TTGAGTATAG GGGTGCCAAG CTTCTCATAG TGGAGCAGTT TCCCGACACT GCCGGGTCCA TTATCTCGTT
CAAGGTTGAC TCTGATATCT TATCGTTGGA CGGGAAGGAA CCGCTTCAGA CTGAAGCCGA GGTTGGTGAC GATGGCAAGC
TTCATGTTAC TGTCAGGAAG TCTACCAGTT CGCGCTCTGA GATATTCTCG CGGCGCTCGC ATGGTCCTAA CTCGGTTTCG
TTGACTCCGA GGCCTTCCAA TTTAACCAAT GCGGAGATTT ATTCGCTTCA GTCTTCGAGG AATCCGACGC CAAGAGGGTC
CAGTTTCAAC CACACGGATT TCTACTCGAT GGTGAATAAT GGGAGGAACG TGAGTCCGAG GCAGAGTAGT TTTGGGGGGG
TGCCGTTTGA TGAGGAGAGT GGTGTGAAGG TTAATGGGGG TGCCGGAGCA TACCCTGCAC CTCACAATGC GGGGATTTTT
TCTCCGGTGG GGAAGAAGAA GGGTGGTGGT GGTGGTGGAG AAGGTGGAGG GAAGGATCTT CACATGTTTG TGTGGAGTTC
GAGTGCTTCT CCGGTGTCGG AGGGTGGGAT CCATGTCTTC AGAGGTGGGG AGTATGGAAA TGACCAACTT CCTGTTGGTG
GGGTGGCTCA CCAGAAAGAT TATGATGATT TCGGTCACGA CGAATTTAGC TTTGGGAACA GAACCGTCGC TAATGGAGTG
GAAAAGGAAG GGCCAGTACT TTCGAAGCTT GGCTCAAGTT CGACGGCCGA GCTTCATCCG AAAGCACAGG GTGAATCCAA
AGCTACGTCC ATGCCACCCA CAAGTGTTAT GACAAGACTC ATTCTGATTA TGGTGTGGAG AAAGCTGATC AGAAACCCCA
ACACATATTC CAGCCTCTTT GGTCTCACTT GGTCTTTGAT CTCATTCAAG TGGAATGTTG TTATGCCCGC TATCGTTGCT
CGATCCATAT CAATTTTATC TGATGCTGGC CTTGGGATGG CAATGTTTAG TCTTGGGTTA TTCATGGCAT TGCAACCAAA
AATTATTGCA TGTGGAAACT CGGTTGCTTC CTTTGCTATG GCAGTTCGTT TCCTCACTGG ACCTGCTGTC ATGGCTGTCG
CTTCAATAGT GGTGGGGCTC AGGGGAGTTC TGTTGCACAT AGCTATTGTA CAGGCTGCTC TGCCTCAAGG GATTGTCCCT
TTTGTGTTTG CTAAGGAATA CAACGTTCAT CCAGACATCC TTAGCACCGG GGTTATATTT GGGATGCTAA TCGCTCTTCC
TATCACGCTA GTTTACTACA TTTTGCTTGG GCTTTGAAGG AAGGAAAGGA GTAATTGGAG TGGATTACAG TGCTACCCTT
TTGTTATATT TATAGGTTAA TTTTTTTTGG CATCCTCTAA CAATGTAGAA GTTAGTGAGA GGGGGGGAGT GACGTTGTAA
TCTGCAGAGA CAGAAAGAAT GGTGAATGGT GGTGGTGTGG TGGAGAGAGT CGGAAGAGAA GGTGATATGA TGATATATTT
TAGGGCTATA GGTAGGTGGG TGGGTAGTAG GAAACTTTTG TTTTGGCGGT TTTAGCCTTT TTACTGTGAA CCCCACTCTC
TTATATTTTG GTTGGTTTAA TGAAAAAGAG AAAGTGAAGA TTGTTGGTAG TTGTCGACAC CTTTCTCTTT CTTTTCACAA
GTACTTTTTT TCTAGGCCAA AAGGAGGATC GGGAATCTCG ATCTCTATCT ATCCTATGCT TGCAAGTGGT TTTGTTTTGT
TTTTCTTTTC TTCTAAGGGC AAAAAAAGTG CCAAACCAAA CCGAACAGC

>Vigan.04G261000.01
ATGATAACCT TGTTGGACCT CTACCATGTT CTCACCGCGG TCGTGCCGCT CTACGTCGCC ATGATACTCG CCTACGGTTC
CGTCAAGTGG TGGAAGATCT TCACCCCGGA CCAATGCTCC GGCATCAACC GCTTTGTCGC TCTCTTCGCG GTTCCCCTAC
TCTCCTTCCA CTTCATCTCC ACCAACAATC CCTACGCCAT GAACTACAAG TTCATAGCTG CGGATTCTCT CCAGAAAGCC
ATAGTCCTTG CCGTCCTCTT CGTCTGGTCT AGAACCAGCT CGAGGGGCTC TCTTGAATGG TCCATCACGC TCTTCTCCCT
CTCCACGCTC CCTAACACGC TCGTCATGGG TATCCCATTG CTCAAGGGCA TGTACGGGGA CGCCTCGGGG ACCCTCATGG
TCCAGATTGT GGTGCTTCAG TGTATCATCT GGTACACTCT CATGCTCTTT TTGTTTGAGT ATAGGGGTGC CAAGCTTCTC
ATAGTGGAGC AGTTTCCCGA CACTGCCGGG TCCATTATCT CGTTCAAGGT TGACTCTGAT ATCTTATCGT TGGACGGGAA
GGAACCGCTT CAGACTGAAG CCGAGGTTGG TGACGATGGC AAGCTTCATG TTACTGTCAG GAAGTCTACC AGTTCGCGCT
CTGAGATATT CTCGCGGCGC TCGCATGGTC CTAACTCGGT TTCGTTGACT CCGAGGCCTT CCAATTTAAC CAATGCGGAG
ATTTATTCGC TTCAGTCTTC GAGGAATCCG ACGCCAAGAG GGTCCAGTTT CAACCACACG GATTTCTACT CGATGGTGAA
TAATGGGAGG AACGTGAGTC CGAGGCAGAG TAGTTTTGGG GGGGTGCCGT TTGATGAGGA GAGTGGTGTG AAGGTTAATG
GGGGTGCCGG AGCATACCCT GCACCTCACA ATGCGGGGAT TTTTTCTCCG GTGGGGAAGA AGAAGGGTGG TGGTGGTGGT
GGAGAAGGTG GAGGGAAGGA TCTTCACATG TTTGTGTGGA GTTCGAGTGC TTCTCCGGTG TCGGAGGGTG GGATCCATGT
CTTCAGAGGT GGGGAGTATG GAAATGACCA ACTTCCTGTT GGTGGGGTGG CTCACCAGAA AGATTATGAT GATTTCGGTC
ACGACGAATT TAGCTTTGGG AACAGAACCG TCGCTAATGG AGTGGAAAAG GAAGGGCCAG TACTTTCGAA GCTTGGCTCA
AGTTCGACGG CCGAGCTTCA TCCGAAAGCA CAGGGTGAAT CCAAAGCTAC GTCCATGCCA CCCACAAGTG TTATGACAAG
ACTCATTCTG ATTATGGTGT GGAGAAAGCT GATCAGAAAC CCCAACACAT ATTCCAGCCT CTTTGGTCTC ACTTGGTCTT
TGATCTCATT CAAGTGGAAT GTTGTTATGC CCGCTATCGT TGCTCGATCC ATATCAATTT TATCTGATGC TGGCCTTGGG
ATGGCAATGT TTAGTCTTGG GTTATTCATG GCATTGCAAC CAAAAATTAT TGCATGTGGA AACTCGGTTG CTTCCTTTGC
TATGGCAGTT CGTTTCCTCA CTGGACCTGC TGTCATGGCT GTCGCTTCAA TAGTGGTGGG GCTCAGGGGA GTTCTGTTGC
ACATAGCTAT TGTACAGGCT GCTCTGCCTC AAGGGATTGT CCCTTTTGTG TTTGCTAAGG AATACAACGT TCATCCAGAC
ATCCTTAGCA CCGGGGTTAT ATTTGGGATG CTAATCGCTC TTCCTATCAC GCTAGTTTAC TACATTTTGC TTGGGCTTTG
A

>Vigan.04G261000.01
MITLLDLYHV LTAVVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIS TNNPYAMNYK FIAADSLQKA
IVLAVLFVWS RTSSRGSLEW SITLFSLSTL PNTLVMGIPL LKGMYGDASG TLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL
IVEQFPDTAG SIISFKVDSD ILSLDGKEPL QTEAEVGDDG KLHVTVRKST SSRSEIFSRR SHGPNSVSLT PRPSNLTNAE
IYSLQSSRNP TPRGSSFNHT DFYSMVNNGR NVSPRQSSFG GVPFDEESGV KVNGGAGAYP APHNAGIFSP VGKKKGGGGG
GEGGGKDLHM FVWSSSASPV SEGGIHVFRG GEYGNDQLPV GGVAHQKDYD DFGHDEFSFG NRTVANGVEK EGPVLSKLGS
SSTAELHPKA QGESKATSMP PTSVMTRLIL IMVWRKLIRN PNTYSSLFGL TWSLISFKWN VVMPAIVARS ISILSDAGLG
MAMFSLGLFM ALQPKIIACG NSVASFAMAV RFLTGPAVMA VASIVVGLRG VLLHIAIVQA ALPQGIVPFV FAKEYNVHPD
ILSTGVIFGM LIALPITLVY YILLGL*