GBrowse Details

Vigan.04G258500.01

Basic Information:
Name: Vigan.04G258500.01
Multiple alignment
Variant Information
Position: Chr04:37682511..37685861 (+ strand)
Length: 3351
Functional Information:
Description: Similar to Uncharacterized protein. [I1N8N8, Glycine max]
GO: Molecular Function: nucleic acid binding (GO:0003676)
InterPro: Single-stranded nucleic acid binding R3H (IPR001374)
SUZ domain (IPR024771)
R3H domain-containing protein, viridiplantae (IPR024773)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:423.37,162.71,58.87,91.49,47.99,45.56,86.37,54.98
Automatic updates:
Name: NM_001255916 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100814835 (LOC100814835), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001361511 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max R3H and SUZ domain-containing protein (LOC100814835), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:37682511..37683001 (+ strand)
Length: 491
Type: five_prime_UTR
Position: Chr04:37683002..37683113 (+ strand)
Length: 112
Type: CDS
Position: Chr04:37683875..37684499 (+ strand)
Length: 625
Type: CDS
Position: Chr04:37684814..37685093 (+ strand)
Length: 280
Type: CDS
Position: Chr04:37685661..37685711 (+ strand)
Length: 51
Type: CDS
Position: Chr04:37685712..37685861 (+ strand)
Length: 150
Type: three_prime_UTR

>Vigan.04G258500.01 class=Sequence position=Chr04:37682511..37685861 (+ strand)
AAAAAAGATA GTGTAGAATT AATGATTTGT GATGGATGGA ATAGTAGAAA GTGAACCGTG AAAAAGGAGA TAATGTGGTG
AGGGATTTTG TGTGTTCACA TTAAAGAAGA AAAAAATAAT AAAGAAAAAT GGATGAAAAG AAGATTTGGA GAAGGAAGTA
TTTATTACTT GATCCGTGGA AGCAAGATAA GAATAAGAGG AAGAAGGAGA AGAGAGAGAA GAAGTTGAAG GGTTGGGTTT
TGTAATCCAA TCTTCCTTTT TCCTATGCTT TTAAGGCACA ATTTCTTCTA CCTCCTGTCT TCTTCTTTCT TCTCTTCCTG
ACTCTTATTA TTCCTTTTCT TTACCCTTTA CCTTTTGCCC AGAAAGGAAG GGAAGGAAAA AGGAACAACT AATTGTATTA
TTATTGTAAT TATTTTTATA ATTATTATTA TTATTATTTA TTATTATTAT TATTAAATTA AAATTATTAT TATCGTTGTA
ATTGCTCATC CATGGATTCC TCTTCTCTCT CCAACGATTC GGTTTCTGGA TTCAAAGACA AGGAGTCAAT GGTTGACCCC
TTTTTAGTCG AGGCTCTCCA GAACCCTCGT CACCGCCTTA CCAGTTAGTG TTTTCTTAAT TATCCTCCTC TTTCTCTCTT
TTATTAATTG TTTTTTTCGA ATTTTTGTTT CTGGGGTGGG ATTGTTTGTG CTATTCTTGT GTTTCCGCGT CGTGGGTATG
CTTCAAAATT GTTGCTTTAG CTCGATTTCT CGTTGACCCC TTTGTCTTTT ATTTTTTTTG AATTTTTTCG TTTATGGGTT
TTGCGTGTAG GTTTTTTTAT GCGAATCTTT GTGCTTTTTG ATATTTTTAG ATGTGTTTAG GTTAATTGAA GTCAGATCCG
GGATGGCTGT GGTTATTTCC TGCTTAATTG TGATAATTTG AGATTCAGGT AGCTCTTTGG TAATAATTAA GTAATAGGTT
GGTCATTTGG GGGCTTTATT GAAAATTACG TTCTCGTTGA AAATGATGTG ATCGTAGGCC GTGTAGGCAT GTATGTTTCT
GCCGAATAAA ATTTTAATTT GGAATGAAAT AGGGAAGCAG CTTAATTTCC AGAGTTCATA GATTGTATTG TTCTGTAGCA
TTTTTATGCG TTTAGTTCTT ACTCTTTAGA TGGAGTTGTG CTATTGCTTG CTTTGATCAA AATTTCATCT GTCACAAGTT
TAAAGTAGTT TTCTAGCTAA TGGATGACTT ATTCTTTGAT GATTATTTTC TGCCTGTGAT TTCCCGTTGC CAATGTTGAT
TCTGATCACA TTTTCCGATT TTTTCTTGGT CGTTGTTAAA CTTGATATTT TTCTTATTAT TTTGTACTTT GTTTTTGTCC
TTAGTTTTGC GGATGGAGCT GGACATTCAG AGGTTTATGA ATAATGCTGA CCAACAGCAT TTTGAGTTTC CACATTTCCC
TTCTTCCTAT CTCAGATTGG CTGCACATCG TGTTGCTCAA CACTACAGCA TGCAAACAAT GGTTCAAGAT ATTGGCTTAG
ATGGTCAGGG AAGTAAAATT CTCGTGAGAA AGTTACCAGA GAGCAAGTAT CCCATGGTTA AGTTATCTGA AATACCTGCA
AAGCAATTGG AAAATGATAA ATCTGAGCAG AAAAAATTTG TTATTAGACC TAGGCCTAAT AAAAACCGTT TGAATGATGC
TAATGGAGTT GGGATGAAAG GAAATCCTGT AAGAAGTGTG GAAGAGAGGA AGGAAGAATA TGACAGAGCA CGAGCACGTA
TCTTTAGTGG CTCTAGAATC CCTGACTCTG GTGATATCTC ATCCATGGTT CCAATGGATG GGAGGAATTC TTCTACTAGC
AAGGATGAGA GTGAAACTAG CAAGAACCCC GTTGCTGCTG ATTCAGAAAG ATGTATCAGT GTCAGGGATA TTTGTGCGAA
TCGAGTTGCC ATATTCAGGG ATAGGGAAAA GGACCGTAGT GATCCAGATT ATGACCGTAG TTATGGAAGG TGAGTCATAT
CACTGTACCC TGTTAACTAA TTGAGAGCTT TCCAGCAATT CAATGCTATA GTTGCAGAAG CATGATAATA TATTTGAAAA
CAAAAGATTA AAAGTTGTCT CTTTGTGAGA GAGACATAGA GTGGGGGAGG GGTCAAGAGT AAAAACTGAA TAATGGCATT
TTTTGTTATT TGGCTGGCAC CTTTGATGGA TTTAAGAATT TATATAACTT GTGATCGTTT TGTTTCTTCA GTTTTTTTTG
GTTATTTGTA CTGATTTAAT TTTTAGTGTA CATTTATCAG ACTGAATTAA GTTATCGGTG CAGGTATGCC AGGAGTATTC
CAACCTCTGC TGTTAACTTG GTGCCATTTA ACTTGCTAAA AGTTCAACCT TCATTTGCTC AATATGACGC TACATTTAAT
CATTTGGGTC AGATGTCACA AACTCAGGCC ACACATGGCT ATGCTCCTTC CACCCCCATA ATGAATCCTT TTGGCACCAC
AGGATTAAAT CAGACACCTA CGGACGGTGC TTACATACAG TGGCCTAGTG CTGCTATGAT GTATGCACAT TCATATGACC
AATTTAGACA TGCTGTTTTC CAGGTAACTA ACATTTAATT TACTTACTTT ATTATGTTGG AGATCTCACA CGACTAAAAA
TAAAACGGGT TTATAATATA CAAGTGAGTA CAAACCTTAC TTTTATAATG TCGAGTTAAG TCGAAAGTCC ATTACTTAAC
ATAAGCAGAA CAAGTGTTTT CTGCATTTGC TTTAAAAATT ACAAAGACAT GTTAGCAATT AGTGTAATAA TTTGATTAAT
TAATGATGTA GACATTAGTT AATGCTCTCA ACTCCTTAAA ATGGGTTTTA GAAATGACTG CTTTTGTGTT GAAGTTTATA
TAGTTTTTAT TCTTGTAAGA TAATGCTATA GATTTGGATT GTTAGACCAT TTTTATTCTC AAATAAGGAC TAAATTTGTG
GGGAGCTAGA TGTCTATAAC CATACCCATT TTAAGTGCTG TTGATTTTCC TGATATGTGA TAATTATGCT TTGTTTGAGT
TCTACTTTCT GACAAGGACA AAATAATTAT TTTTTTTCCT GTATTTCACT ATATCTGCTA TTACTTGTCA TTTTATGCAT
CTCATCTCAT ACTTTTTACT GTTTTTGCAG GCTCCATTTG GTCAACAGCC TTTGAGCTTT GACTATTCGC AGAACTATTA
GGTGACTATT GAATTTGGAT GAAAAAGTTA TGTTAGCCTT TTAGAATTTC ATGTTAGGTT CATTTGTCAG TGCTGTCATA
GACCCTTGTT GTAGTATTAT GTCTTCTGTT TCAGTTTTGA TGGTTATAGT AAATCGTTGG GTACTTCTCA T

>Vigan.04G258500.01
AAAAAAGATA GTGTAGAATT AATGATTTGT GATGGATGGA ATAGTAGAAA GTGAACCGTG AAAAAGGAGA TAATGTGGTG
AGGGATTTTG TGTGTTCACA TTAAAGAAGA AAAAAATAAT AAAGAAAAAT GGATGAAAAG AAGATTTGGA GAAGGAAGTA
TTTATTACTT GATCCGTGGA AGCAAGATAA GAATAAGAGG AAGAAGGAGA AGAGAGAGAA GAAGTTGAAG GGTTGGGTTT
TGTAATCCAA TCTTCCTTTT TCCTATGCTT TTAAGGCACA ATTTCTTCTA CCTCCTGTCT TCTTCTTTCT TCTCTTCCTG
ACTCTTATTA TTCCTTTTCT TTACCCTTTA CCTTTTGCCC AGAAAGGAAG GGAAGGAAAA AGGAACAACT AATTGTATTA
TTATTGTAAT TATTTTTATA ATTATTATTA TTATTATTTA TTATTATTAT TATTAAATTA AAATTATTAT TATCGTTGTA
ATTGCTCATC CATGGATTCC TCTTCTCTCT CCAACGATTC GGTTTCTGGA TTCAAAGACA AGGAGTCAAT GGTTGACCCC
TTTTTAGTCG AGGCTCTCCA GAACCCTCGT CACCGCCTTA CCATTTTGCG GATGGAGCTG GACATTCAGA GGTTTATGAA
TAATGCTGAC CAACAGCATT TTGAGTTTCC ACATTTCCCT TCTTCCTATC TCAGATTGGC TGCACATCGT GTTGCTCAAC
ACTACAGCAT GCAAACAATG GTTCAAGATA TTGGCTTAGA TGGTCAGGGA AGTAAAATTC TCGTGAGAAA GTTACCAGAG
AGCAAGTATC CCATGGTTAA GTTATCTGAA ATACCTGCAA AGCAATTGGA AAATGATAAA TCTGAGCAGA AAAAATTTGT
TATTAGACCT AGGCCTAATA AAAACCGTTT GAATGATGCT AATGGAGTTG GGATGAAAGG AAATCCTGTA AGAAGTGTGG
AAGAGAGGAA GGAAGAATAT GACAGAGCAC GAGCACGTAT CTTTAGTGGC TCTAGAATCC CTGACTCTGG TGATATCTCA
TCCATGGTTC CAATGGATGG GAGGAATTCT TCTACTAGCA AGGATGAGAG TGAAACTAGC AAGAACCCCG TTGCTGCTGA
TTCAGAAAGA TGTATCAGTG TCAGGGATAT TTGTGCGAAT CGAGTTGCCA TATTCAGGGA TAGGGAAAAG GACCGTAGTG
ATCCAGATTA TGACCGTAGT TATGGAAGGT ATGCCAGGAG TATTCCAACC TCTGCTGTTA ACTTGGTGCC ATTTAACTTG
CTAAAAGTTC AACCTTCATT TGCTCAATAT GACGCTACAT TTAATCATTT GGGTCAGATG TCACAAACTC AGGCCACACA
TGGCTATGCT CCTTCCACCC CCATAATGAA TCCTTTTGGC ACCACAGGAT TAAATCAGAC ACCTACGGAC GGTGCTTACA
TACAGTGGCC TAGTGCTGCT ATGATGTATG CACATTCATA TGACCAATTT AGACATGCTG TTTTCCAGGC TCCATTTGGT
CAACAGCCTT TGAGCTTTGA CTATTCGCAG AACTATTAGG TGACTATTGA ATTTGGATGA AAAAGTTATG TTAGCCTTTT
AGAATTTCAT GTTAGGTTCA TTTGTCAGTG CTGTCATAGA CCCTTGTTGT AGTATTATGT CTTCTGTTTC AGTTTTGATG
GTTATAGTAA ATCGTTGGGT ACTTCTCAT

>Vigan.04G258500.01
ATGGATTCCT CTTCTCTCTC CAACGATTCG GTTTCTGGAT TCAAAGACAA GGAGTCAATG GTTGACCCCT TTTTAGTCGA
GGCTCTCCAG AACCCTCGTC ACCGCCTTAC CATTTTGCGG ATGGAGCTGG ACATTCAGAG GTTTATGAAT AATGCTGACC
AACAGCATTT TGAGTTTCCA CATTTCCCTT CTTCCTATCT CAGATTGGCT GCACATCGTG TTGCTCAACA CTACAGCATG
CAAACAATGG TTCAAGATAT TGGCTTAGAT GGTCAGGGAA GTAAAATTCT CGTGAGAAAG TTACCAGAGA GCAAGTATCC
CATGGTTAAG TTATCTGAAA TACCTGCAAA GCAATTGGAA AATGATAAAT CTGAGCAGAA AAAATTTGTT ATTAGACCTA
GGCCTAATAA AAACCGTTTG AATGATGCTA ATGGAGTTGG GATGAAAGGA AATCCTGTAA GAAGTGTGGA AGAGAGGAAG
GAAGAATATG ACAGAGCACG AGCACGTATC TTTAGTGGCT CTAGAATCCC TGACTCTGGT GATATCTCAT CCATGGTTCC
AATGGATGGG AGGAATTCTT CTACTAGCAA GGATGAGAGT GAAACTAGCA AGAACCCCGT TGCTGCTGAT TCAGAAAGAT
GTATCAGTGT CAGGGATATT TGTGCGAATC GAGTTGCCAT ATTCAGGGAT AGGGAAAAGG ACCGTAGTGA TCCAGATTAT
GACCGTAGTT ATGGAAGGTA TGCCAGGAGT ATTCCAACCT CTGCTGTTAA CTTGGTGCCA TTTAACTTGC TAAAAGTTCA
ACCTTCATTT GCTCAATATG ACGCTACATT TAATCATTTG GGTCAGATGT CACAAACTCA GGCCACACAT GGCTATGCTC
CTTCCACCCC CATAATGAAT CCTTTTGGCA CCACAGGATT AAATCAGACA CCTACGGACG GTGCTTACAT ACAGTGGCCT
AGTGCTGCTA TGATGTATGC ACATTCATAT GACCAATTTA GACATGCTGT TTTCCAGGCT CCATTTGGTC AACAGCCTTT
GAGCTTTGAC TATTCGCAGA ACTATTAG

>Vigan.04G258500.01
MDSSSLSNDS VSGFKDKESM VDPFLVEALQ NPRHRLTILR MELDIQRFMN NADQQHFEFP HFPSSYLRLA AHRVAQHYSM
QTMVQDIGLD GQGSKILVRK LPESKYPMVK LSEIPAKQLE NDKSEQKKFV IRPRPNKNRL NDANGVGMKG NPVRSVEERK
EEYDRARARI FSGSRIPDSG DISSMVPMDG RNSSTSKDES ETSKNPVAAD SERCISVRDI CANRVAIFRD REKDRSDPDY
DRSYGRYARS IPTSAVNLVP FNLLKVQPSF AQYDATFNHL GQMSQTQATH GYAPSTPIMN PFGTTGLNQT PTDGAYIQWP
SAAMMYAHSY DQFRHAVFQA PFGQQPLSFD YSQNY*