GBrowse Details

Vigan.04G254100.01

Basic Information:
Name: Vigan.04G254100.01
Multiple alignment
Variant Information
Position: Chr04:37118333..37124325 (+ strand)
Length: 5993
Functional Information:
Description: Similar to uncharacterized protein. [B8BIV2, Oryza sativa subsp. indica]
InterPro: Protein of unknown function DUF309 (IPR005500)
TTHA0068-like domain (IPR023203)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.09,0.49,3.65,102.43,0.05,2.46,0.18,5.87
Arabidopsis thaliana homolog: AT2G41120.1
Automatic updates:
Name: NM_001255783 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100785613 (LOC100785613), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:37118333..37118514 (+ strand)
Length: 182
Type: five_prime_UTR
Position: Chr04:37118515..37118907 (+ strand)
Length: 393
Type: CDS
Position: Chr04:37123331..37123478 (+ strand)
Length: 148
Type: CDS
Position: Chr04:37123803..37124029 (+ strand)
Length: 227
Type: CDS
Position: Chr04:37124030..37124325 (+ strand)
Length: 296
Type: three_prime_UTR

>Vigan.04G254100.01 class=Sequence position=Chr04:37118333..37124325 (+ strand)
AACCGTCCAA AACAAAAAAT CTAGGCAACA ATAAAGTACA GTACCACAAA ATCATATTCA TAAATCTTAA AAGAGTGGAA
GAATTCTTAG TTGCCACGAC ATGAGCTTCC ACCATCACCA CAGAAAAAAA TGAAAGAAAA TATGGCTAAA CAAGAGAAAC
CTTTCTTTGC CATTCATCAT CCATGGCTCT TCTTCCTTCT TCTTCTCTCA TAACTCTTCT CCATATCTCA TCCCAACGTT
ATCTTCCATC TTCCTTTCAC AGCTCCATCA CTCTTGCATC ATCTTTCAAA CCACTGACTA TTTCAAAGCA GCACCTGAGC
CACAGAAGCT GCAATTCCAA GCTCTTGGCT TTTTCTTACA GGTATTTCAT TGAAGAAGAA GAAGAAGATA ATGAAGATGA
AGATGATGAT GAAAACCACA CCTTTGATGA AGCTGTGGCT CTCTTCAATG GAGGAGAGTA CTACAAATGT CATGACTATC
TTGAATCCCT TTGGAACAAT GCAGAAGAGC CCACCAGCAC ACTCATTCAT GGAATACTCC AATGTGCGGT CGGTTTCTAC
CACCTCTTCA ACCAGGTTTT CATTCATACC CATAACTTTT AAATATATAT ATATATATAT ATATATATAT ATATATATAT
ATATATATGA TTATTCCTAC CAAAAATCTG TTAGATTATT TTGCTAGTAT TAACATTATA TCTTTTCTCA TTACAAATAT
TGGGTATAGA CACTTTTTCC ATGACATCTT TTTGAAATTA TGGGTGGAAT TTTTGTAAAG AAATTATTAA GGTATTGTCC
TTCAAAGTAT CTAGTTCCAT AAACTCTACA AAAGCACTGG AACACTTTGT AAAGGAACAC GACCTAGTTT GTTTGGTTGA
GCTCTTTTAA GTAACTTATT ACGACCCAAA TGAATATTTT TATATGAACT ATCATCTACT AGCACATACT TTTATGTATG
AAATATTTAT TGTGAAGAGT GTGTCCTTCT GTTGATAAGG TTATAAGATT AACATTATGT GGTTCTTCTA TTAAGGACCT
CAAAATCGCC TTTATTATTT GAATTCATGT TCTTCTCACA AGACTTTTAA ATTAGCTTCA TGTTGTAGTA TCATTGCTTC
TTATTGTAAA TCCTCCATTT ACCTCCTAAA TAAACAAATT ATTCTCCATG CCAATACTAT ATGGCTTCTG GTATAAACTA
TACATGATTT AGAAAAAGTT TTATCAGATC ATGCTATAGG CGTCAAAATT GACCTGCAAA ATTTTGACAG ACATTTTATC
CTTCACAAAA GTATTTGATT TTTCTCCTTT AAATGACAGG GAAGGGTATC TATGAAGACA CTCCAATAAA CTCCAATAAT
TAAGGATTTT CATTTTATTT GAAATGATGG TTACGTTCTA TAATGATTAA GATCTTGACC CAACTTAATG ATTATTAAAG
AGTAATGCAA ATTCTAGAAG AATGTAGAAA CTCCTAAGAT AGAAGAAAAG AAATGTAACA CAAGTTCTAG AATATTGTAG
AAAAGTCTAA GATAGGAAGA AAAAAATCAA GAATATTCTA CATAGGTAAA AATCTAGAAC ATTCCACATA AGTTGTGGCT
AGTATGTTCT AGAATAATCT ATGGGTCTAT AAATACCCAT GAACTCTACC ATTTGAGGTA TGTAGCCAAC ATCTATCATT
TGTATGAACC AACATCTACT ACAACTAAAG ACAACTACAA CACTTCTTCC AACTACTACT TCTACATTCT ACTATCTCTA
CATTTTCTCT ACCATCAACT ACTCCTTTCA CAACCTTAAA ATACTAACAG TGGTATCAGA GCTACGTTCG GTCATCTACT
GGGTGTAGAT AAAATTTTCA ACTACCTCAA ACAAAACTAT AACTCATTCT ACTACTCCCA AATATATTCT CAACAATGGC
TACTACTAAT CAAACATCAT CAATTCCAGT ACCTATTTTC AAAGGAGAAA GTTATGATTT TTGGAGTGTC AAAATGAAGA
CATTCTTTCG CTCTCAAGAT TTATGGGATA TCATAGAAGA GGGATTCACT ATTCCAGAAG ACACTTCTAC TCTTACTACA
GCTCAAAAGA AGGAGTTGAA AGAAAACAAG CAGAAGGATT CAAGGGCTTT ATTTGTTCTT CAACAAGCAG TTGATGACAC
AATTTTTCCA AGGATAATTG GTGCCACAAG TGCAAAACAA GCTTGGAACA CAATACAAGA GGAGTTTCAA GGAAGTGACG
AGGTACGCAA TATTAAACTT CATTCTCTAA GACGAGAGTT TGAATTATTA AGAATGAAAG AATCTGAGAC CATTAAAGAC
TACTATTCTA GAATAAAAGA AATAGTTAGT CAGATGAGAG CCTATGGGGA AAATATTCTT GACAAAAAGA TCGTTGAGAA
AATTTTAATT TCTATTCCCC AAAAGTATGA TGCAATCGCA ACCGCGATTG AACAAACAAA AGATTTGGCT ACATTGTCAA
TCACACAACT AATGGGCTCT CTTGAAGCTT ATGAACAAAG ATTGAAAAGG CATGAAGAAG ACTCGGTTGA AAATGCCTTT
CAATCAAAAC TAAAATTACG GTCTCAGAAT AAAGAATATG AAGGAGATAA AAGTAGAGAA GAAATTTCTA GAAATAAAGA
AAATCCTAGA AGCTTCTCTA TGACTCGTCA AGAAAAATAT CCTCCATGTG GCATATGTAA AAAGACAAGT CACTTGGAAA
AAGATTGTTG GCATCATGGA AAACCTCAAT GCAAGTATTG CAAGAAGTTT GGTCACATAG AGAAGTATTG TCGTAGTAAA
AATAGACATC AAGCAAACTT TGCTGAAGAA GATAATCAAG AGAAACTCTT ATTCTACGCC AATCAAGAAT CTTCTGGTAG
AGAAGGAAGT TGGTACTTGG ATAGTGGATG CAGTAATCAC ATGGAAAAAG ATCAAAGTAT CTTCAAAGAC ATTGATAAAT
CTGTCAATGT CAAAGTTCGG CTAGGAAATG ACACCACAGT GGAGTCTCGA GGCAAAGGAA CTGTCATGGT GGAGACAAAG
AAAGGTACTA AATTCATCAA AGACGTTTTA CTAGTTCCAA ATCTTAAAGA AAATCTTTTA AGTATTGGCC AAATGATGGA
GAATGGATAT TCTCTTCATT TTGAGAAAGA TACATGCAAA ATTTATGACA ATAAAATGAT AGAAATTGGC CAAGTAAAAA
TGGAGAAGAG AAATAGAAGC TTTCCTATAA GCTTCAAACC TGGAACTAAT ATTGCCATGA AGGTAGAAGT TGATGACTCA
TGGCTTTGGC ATAGGAGATT TGGCCACTTC AACACACATG CCTTAAAGCT TCTATATACG AAAAACATGA TGAGAGATCT
TCCATACTTG AAGGAGAATA ATGAATCATG TGAAGGATGT CTCCTTGGAA AACAACATCG ATTACCATTC TCGACAGACA
AAGCATGGAG AGCAAAAGAC TTATTGGAGT TGATTCATAC CGATGTTTGC GGACCGATGA GAACACCTTC ACATCATAAC
AACAGGTATT TCATCCTCTT CATTGATGAC TTCTCTAGAA TGACATGGGT CTATTTCTTA AAGGCAAAGT CAGAAGTTTT
TGGAGTATTC AAGAAATTCA AGGCCCTTGT TGAGAAGCAA AGTGGAAAAC AGCTAAAAAT ACTTAGAAGT GATCGTGGCA
AGGAGTACAC ATCTCGCGAG TTTGACAAAT TCTGTGAAGA TGAAGGCATA GAGCGACAAC TTACAGTCGC ATATACTCCA
CAACAAAATG GCGTGTCAGA GAGAAAGAAT CGCACAGTTA TGGAGATGGC AAGATCAATG CTGAAAGAGA AAAGTATGCC
TAACACTTTT TGGGCTGAAG CAGTCTACAC TGCAGTTTAT ATTCTAAACA GATGTCCAAC TAAAGCAGTC CAAGACAAGA
CTCCTATTGA AGCTTGGAGT GGGAGAAAGC TATCAGCTAA ACACCTACGA GTATTTGGGT CTATTTGCTA CATACATGTT
CCTGATCAAA GGAGGCACAA GCTTGAAGAC AAAACTATAC GAGGAATATT CTTGGGATAT AGCACACAAT CAAAAGGCTA
TCGAGTCTAC AACCTACAAA CGAAAAAGCT CATCATCAGT CGAGATGTTG AAGTTGATGA AAATGCTTCT TGGAATTGGG
AAGAAGAAAA AGTTGTTAAA AGCAACATTT TACTTCTAGT GCAACAATCT CAAGAAGAAA CTCAAGAAGA GGTAGAAAAT
TCAGGTATGC TTTCTCCACC TGCACAACAA GATTCTTCAC CTGAATCTAG TCCAAGAAGA GTAAGATCTT TGGTAGACAT
GTATGAAACC TGCAATATGG CCATGATTGA ACCTAACTGT TATGAAGAAG CATCAAAGCA AGAACTATGG TCAAGGAAAT
GGAGGAAGAA GATCAAATTG AAGATATGTT ACCAAGACCA AGATTTGAAC TACTATGCAC AATGTTTGGA GTTACCGAAT
TTGCATTAAG GAGGAGTATT AAAGAGTAAT GCAAATTCTA GAAGAATGTA GAAACTCCTA AGATAGAAGA AAAGAAATGT
AACACAAGTT CTAGAATATT GTAGAAAAGT CTAAGATAGG AAGAAAAAAT CAAGAATATT CTACATAGGT AAAAATCTAG
AACATTCCAC ATAAGTTGTG GCTAGTATGT TCTAGAATAA TCTATGGGTC TATAAATACC CATGAACTCT ACCATTTGAG
GTATGTAGCC AACATCTATC ATTTGTATGA ACCAACATCT ACTACAACTA AAGACAACTA CAACACTTCT TCCAACTACT
ACTTCTACAT TCTACTATCT CTACATTTTC TCTACCATCA ACTACTCCTT TCACAACCTT AAAATACTAA CAATGATCAA
CCCCTCAATT AGATAATTGT TAACTACTTG AGCTATCTAA TATTTTTTTA TTGATATTAC GGTTTTGCTT GATCATGAGT
TACATTGTCT TAAAAAAGAT AGTTCTTTGG TTTAATAGAA CCACAGGGGA GCAATGATGG AGTTGGGGGA AGGACTATGT
AAATTGAGAA AGATGGAATT CTCAAATGGA CCATTCCATA AGTTTGAGAA AGATATTTCA GCAGTTCTAG ATTTTATCTA
TCAGACTCAA ATAGAGTTAG CTGCATGTGA GTGCTCTTAA CCTTGGAAAT CCATGCAATC TGGGTTTTTT TGGACAAATT
TTTCCATTGG AGAAAAATAT TAGAAGAAAA AATTACATAA ATTTATCTAT AAACTAAATT TAGCTAATAT ACAAGTTACA
AAACAAAAGT TTAGAAATGT TTGATGAAAA CTTGTGCAAA TTAGCTTATA CACAAACTTA TTTTAACTTA CAGAAAAGTT
CATTTTATAT ATAGAAAAAG TCCTTGTAAA GAAACATGTC CAAACATACC TTTAAATTGT TTCTGAAGAA ATTTCAGCTT
GTGTTTTCCC TTGAAATTTA AATTGAGCAG GTAGTGAGGA TGTATGTGTT ACAATGGATC GATCAGAAAG ATCTTACCGA
CTTCTGGGGG AATATGCTTC AGGGAAGCGT GTGTATGATC TAGAACTTTG TAGCGATGCA TCAGTGTACA TTGTGTTCTG
TCCTCAAGGC TCTAATGGTT CCTCTGAAGC CCCAAGGGTA AAGCTTCCTA AGCTTAAGGC TACCATGGAA CATCTTGTAG
CCTATGAATA CAAGTGAACA TCTTTTCAAG ACACTGTCCA TAGATCAAAC CACATGCAAT ATTTTTCTGT CCTTCTGTTG
GAAGGAAGAA TTCTCTCGTG CAGTTATCAT AGAATAGTAT CCTGGAGTGA AAATAGCAGT CACAATATGC AAAAAACCTG
TGCAATGATT TCAAAATTTG TGCATTTATG TAACCCCTCT TCCTATACCA GGTCTTTGAT TTTGCAAACA CCTAAAAATA
TCATATTTAA ACTGCAATAC ACTACTGAGT GTTTTCAAAA TTTTATCTTA AATAATTCAG AAGTACTTAT GCA

>Vigan.04G254100.01
AACCGTCCAA AACAAAAAAT CTAGGCAACA ATAAAGTACA GTACCACAAA ATCATATTCA TAAATCTTAA AAGAGTGGAA
GAATTCTTAG TTGCCACGAC ATGAGCTTCC ACCATCACCA CAGAAAAAAA TGAAAGAAAA TATGGCTAAA CAAGAGAAAC
CTTTCTTTGC CATTCATCAT CCATGGCTCT TCTTCCTTCT TCTTCTCTCA TAACTCTTCT CCATATCTCA TCCCAACGTT
ATCTTCCATC TTCCTTTCAC AGCTCCATCA CTCTTGCATC ATCTTTCAAA CCACTGACTA TTTCAAAGCA GCACCTGAGC
CACAGAAGCT GCAATTCCAA GCTCTTGGCT TTTTCTTACA GGTATTTCAT TGAAGAAGAA GAAGAAGATA ATGAAGATGA
AGATGATGAT GAAAACCACA CCTTTGATGA AGCTGTGGCT CTCTTCAATG GAGGAGAGTA CTACAAATGT CATGACTATC
TTGAATCCCT TTGGAACAAT GCAGAAGAGC CCACCAGCAC ACTCATTCAT GGAATACTCC AATGTGCGGT CGGTTTCTAC
CACCTCTTCA ACCAGAACCA CAGGGGAGCA ATGATGGAGT TGGGGGAAGG ACTATGTAAA TTGAGAAAGA TGGAATTCTC
AAATGGACCA TTCCATAAGT TTGAGAAAGA TATTTCAGCA GTTCTAGATT TTATCTATCA GACTCAAATA GAGTTAGCTG
CATGTAGTGA GGATGTATGT GTTACAATGG ATCGATCAGA AAGATCTTAC CGACTTCTGG GGGAATATGC TTCAGGGAAG
CGTGTGTATG ATCTAGAACT TTGTAGCGAT GCATCAGTGT ACATTGTGTT CTGTCCTCAA GGCTCTAATG GTTCCTCTGA
AGCCCCAAGG GTAAAGCTTC CTAAGCTTAA GGCTACCATG GAACATCTTG TAGCCTATGA ATACAAGTGA ACATCTTTTC
AAGACACTGT CCATAGATCA AACCACATGC AATATTTTTC TGTCCTTCTG TTGGAAGGAA GAATTCTCTC GTGCAGTTAT
CATAGAATAG TATCCTGGAG TGAAAATAGC AGTCACAATA TGCAAAAAAC CTGTGCAATG ATTTCAAAAT TTGTGCATTT
ATGTAACCCC TCTTCCTATA CCAGGTCTTT GATTTTGCAA ACACCTAAAA ATATCATATT TAAACTGCAA TACACTACTG
AGTGTTTTCA AAATTTTATC TTAAATAATT CAGAAGTACT TATGCA

>Vigan.04G254100.01
ATGGCTCTTC TTCCTTCTTC TTCTCTCATA ACTCTTCTCC ATATCTCATC CCAACGTTAT CTTCCATCTT CCTTTCACAG
CTCCATCACT CTTGCATCAT CTTTCAAACC ACTGACTATT TCAAAGCAGC ACCTGAGCCA CAGAAGCTGC AATTCCAAGC
TCTTGGCTTT TTCTTACAGG TATTTCATTG AAGAAGAAGA AGAAGATAAT GAAGATGAAG ATGATGATGA AAACCACACC
TTTGATGAAG CTGTGGCTCT CTTCAATGGA GGAGAGTACT ACAAATGTCA TGACTATCTT GAATCCCTTT GGAACAATGC
AGAAGAGCCC ACCAGCACAC TCATTCATGG AATACTCCAA TGTGCGGTCG GTTTCTACCA CCTCTTCAAC CAGAACCACA
GGGGAGCAAT GATGGAGTTG GGGGAAGGAC TATGTAAATT GAGAAAGATG GAATTCTCAA ATGGACCATT CCATAAGTTT
GAGAAAGATA TTTCAGCAGT TCTAGATTTT ATCTATCAGA CTCAAATAGA GTTAGCTGCA TGTAGTGAGG ATGTATGTGT
TACAATGGAT CGATCAGAAA GATCTTACCG ACTTCTGGGG GAATATGCTT CAGGGAAGCG TGTGTATGAT CTAGAACTTT
GTAGCGATGC ATCAGTGTAC ATTGTGTTCT GTCCTCAAGG CTCTAATGGT TCCTCTGAAG CCCCAAGGGT AAAGCTTCCT
AAGCTTAAGG CTACCATGGA ACATCTTGTA GCCTATGAAT ACAAGTGA

>Vigan.04G254100.01
MALLPSSSLI TLLHISSQRY LPSSFHSSIT LASSFKPLTI SKQHLSHRSC NSKLLAFSYR YFIEEEEEDN EDEDDDENHT
FDEAVALFNG GEYYKCHDYL ESLWNNAEEP TSTLIHGILQ CAVGFYHLFN QNHRGAMMEL GEGLCKLRKM EFSNGPFHKF
EKDISAVLDF IYQTQIELAA CSEDVCVTMD RSERSYRLLG EYASGKRVYD LELCSDASVY IVFCPQGSNG SSEAPRVKLP
KLKATMEHLV AYEYK*