GBrowse Details

Vigan.04G247200.01

Basic Information:
Name: Vigan.04G247200.01
Multiple alignment
Variant Information
Position: Chr04:36216458..36220769 (+ strand)
Length: 4312
Functional Information:
Description: Similar to DnaJ/Hsp40 cysteine-rich domain superfamily protein isoform 1. [XP_007029953.1, Theobroma cacao]
GO: Molecular Function: heat shock protein binding (GO:0031072)
Molecular Function: unfolded protein binding (GO:0051082)
InterPro: Heat shock protein DnaJ, cysteine-rich domain (IPR001305)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.47,18.20,14.51,16.44,9.64,11.94,4.07,10.78
Arabidopsis thaliana homolog: AT5G17840.1
Automatic updates:
Name: NM_001250813 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306113 (LOC100306113), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:36216458..36216640 (+ strand)
Length: 183
Type: five_prime_UTR
Position: Chr04:36216641..36216826 (+ strand)
Length: 186
Type: CDS
Position: Chr04:36219483..36219744 (+ strand)
Length: 262
Type: CDS
Position: Chr04:36220370..36220437 (+ strand)
Length: 68
Type: CDS
Position: Chr04:36220438..36220769 (+ strand)
Length: 332
Type: three_prime_UTR

>Vigan.04G247200.01 class=Sequence position=Chr04:36216458..36220769 (+ strand)
AATAAATGGG CCTCACTAAG TCCGTAAGCT GAATCCGAAT TCAAGCTCGG ACGTAGAATT CGGGTATTCC ACGACCCATG
GACCCGCGTC GTGAACTTCG AGACCCAATT GATGAAACAA GCGATTTGTA CGATGAAGAG TGTTGCTTGA ACCATTTGAG
CTTTGCATGT TCATTCGGCA CCGATGGATT CAGCTTCTAT GCAAGTAGCC ACCTCAAAAA ATTTTCTTTG CCCAAATGCT
TCAGTGGCGA AGGTTGCAGG TTCCAAGAAG ATTGCCACCG TCAATTTCAG GTCCAAATTC AAAGGATGTG AAACCAAAAT
CCATGTCGTT TCCTCAAATG GTTCTGTCTC TAGCTGCTCT TCGCGTCCGG TCGGTCATCT TTTTTCTTTT ATTTTTTTAT
TCTTAAGCAG TTTTTTGTTG ATCGATTTTG ATAATGAAAG TTGTTTAGAA AACTTGGCAA TGATGTTAAA TTCCTTTCTG
TACCCAAAAA TCCAGTGATA CTTTGTAATG ATAAAATAGC TATTAAAAAC ATATTCATAC ATGAAAGACA TAAATGGTTT
TTTTTTATTA AGGATGACTT TAGGATAGAA CAGATGTTAG TTTTTCTTTT TCTTTAGTGG TTTGTTTTTA AGATCCTAAT
GACTGGGAAT AATGGCTCAA ATTGGCCCTA GTATTGTTAT TATATGCATT GGTTAACGGT TATCCCTTGC TACATTTCTC
TTAGGTAGAA AAAATTATTT TTGTGTCTTA GTCTGTTACT AAGCAAAGGA CTTTCTTCAC ATTTAGTTGT GTTGTGTGCA
TTTATTTATT TTTTAAATTG CTTATTCCTT TGCACTTTTT TATTTATTTT TCGCTTTTGA AAGTTTAGTA TTTGCCTTCT
TGTATATTGC CGAATGTATG CTGATTAAAT TACTAGTTAG TCATATCATG TTATGTCATG ACCTTGATCT GTTTGTACTT
TGAGAACAAT TCCCTTCCTT CTCTGTTGTA ATTGATATTT TCAATCACTG TCTGAGTTGA CGTGTGATGT GATTTATAAT
GATGCTTTCG TTTTGACCAA AAAGGGAACA AAAACAAGTG TTGCTTAACC TAAGATCAGA ACACTTTCTT GGAGTTTTCC
GTGTTTGAAA TTCAGATATA CACGGTCCTC AACATCATTG ACAACACCTT GATCGGGTAG TTTCATTATG TTGAGCATGG
TCTAGTATTT TCTGGCCTTG CATATTATGG AGTTAACTTA GAAAAAAATC TCTATGAACA CATACAGAAG CAAAAACGAA
ATGACTTTAA GGTAAAAATA AAATGAATCA AAATCTTAAA TTGAAATCAA CTTATTCACC TTAACAACAT ATAGAAAAGT
TAAGTAAGGA AGTTTTTGAA AAAAATGAGG TTTATAAGTT GATATTAGAG AAATTTGATT CATTTTGCCT CATTGATTCT
CAATTGTTTT TTATCAGAAA GTTTATCCAA ATCGGTGTTT AGTGCACAAT TTGCTCATTG GAAGGATAGA TATATAAGTG
GTTGAAACAT GATCAGAAGT TTATTTTTAT TCTGTCGTAG TTCAGACAAT ATCTAAGATT CTCTGAGTAA CACTGTAAGG
ACTTAACAAT TACAAATAAA TGCATGCAAG ATTTATTTCT AAATATTGGA AAAATTATAA GAAGATTCTA ATGAAACTGT
TCCTTTGTTC AAGTTAGTAA GAGTTGAATA ATAGATCACA GAACTGAACA TTTCCATGAG ACCAAGATTT TTGTTTGAAG
CTACATCCTG ATCACACCCT CAAACACAAT TTCCTGTGTT AGTTTGAGAT TGCTGAAATT GATCATGGAA TTGTTGTGGT
GGAAGATCCC ATTATGGTGA TCTAATCAAC CAATTCTGAA AGATAATTCC TAATTCCTAG CCAACTTGAA ATCTCAAGAC
TTGGAGCCCT ACAAATTCTT GTGTCATTCA TTCAACACCT CGCAACTACC TTTTCACACA ACTTGAGCTT TGATCTGTGG
CTGCTACCTG CTGTAACTTT GGGTAATGGT CTAGAAAGGG AGGATGGGTG ATGGTTTGAC CTTCATTACT TCCATTTCTG
CTTTGATTTG ATGTGCTTCT CTTCAGGTTT TTGTTTTTTG CTGCTAGCAT GCTTTGTGCT GTTTTATTCA GTAGTCAAAT
GGTTTTTGGG CTTTGTTTTG TGTTTCGGAT TGTGGTGATA TCATCCGATG GTGTTAGCTG TTATAAAAAA TTGTCAATTA
TACTGTAAAT TGTACTCGAG TATTTTCCTT ACGCATTATA TTAAGTGGCA TCTTACAATC TCACATATTT GTTTGACTCT
TCCAATCTTA GGTAGGATGT CGATCTTGAC AACATTGTAT TTGTCATAGA TGGTAAGAAA GTTAAAGGGA TTGATCTATC
AAGTTTGCAT ATTTAGGTAG CCTTAAATAA TTTAGATACC ACTTGGCAAT AAGCTTTATA TGTAATAAGT TGAGTAACTC
CGGGATTTAA TTGACTGAAC GCTTGGAATT GATTGTGTTG CATATTACTT ATTGGTTGGT GATTGTTCAA TCTTTTATAT
GAACGGGCCC CTAATATTCG GTTTTACCTT GTGGACAACT GTAGTATTTT AATTGTTTTG GAATTATTTT CTATGGTTTT
ATCAGTGTTT TTAGGTTGTT ATAGGGGAAG GGAGTATCTT TTTGTAAAAT ACTTTGTTCC TTTTGTTTAA TAGGATCTGT
GCATCCTTCT CTACTGAGAA ACTGGACTTA TCTCCAACAC TTTTTGATAT TTTTTTGCCT ACTAAGCAAA GCTTAAATGT
CTTAATGTGT TTTATAATTA TAGATAAAAT TCTCTCATGC GTCTATATAA AAGGCCAGGA AGGATTAATA TGTTAAAAGA
GCTGGATAAT TTTTCTGATG GGGGATTATA AGGCGCTGTT TTCCTTGGAT GGATGTTCAA CGATATTGGA GAGCTTTTTT
CATATTACTT ATGCAGAAGT TTGGTGTGAA TGGATGTCTC AGCTAACTAT TTCCTTATAT TTCAGTCTGT GTCAAGTTTG
AAGGCAGATG ATAACAAACG CAGAAGTAAT CTTGAATCTC TGTTTTGTTA TGATAAAGCT ATTCCAGAAG AAATAATTGA
GAAGCCTATT GGGCTATCTT TGGAAGAGAA ATCTATTGGT AACAATCCCC GATGCACTGA TTGCGAGGCC AAAGGTGCTG
TGCTTTGTGT CACTTGTGCT GGTTCTGGTC TATATGTTGA TTCCATATTG GAAAGCCAGG GCATAATTGT TAAAGTTCGT
TGCTTAGGTA TATTCTTTTT CCTGTTCTTG CAAACTTCTT TAGTATGTGC TTGCTGCAGG ACCTCCTACA CCTTACTCAT
GTTTAAACTG TATTTTCTGT GTTTTAGTTA TGTGGTATTG TTACCAGTAG CATTTTTGTG TTTGTCCCTT ATGCGTAGAA
GCTGTTCTCT GATGGAACTT CCTTGATTTT TTAGTTGGAC AATTTTAGCT TAACCTTTTA TTATGGCTTG CCTAGATGAA
CAACTGGAGT TTGGTCTTCT ATGAGGACTT TGAATGAAAC AAGTTTGCAA ATTTTTAAAT CTTTTTTTGG CATGTAGAAT
TAGTATGACT TAAACTAAAA CATTTTTTTT TTTGTGGCTC AAATTTGATG TAACACTCCA CTAATTGCTA GATTAAATGG
GTTGCATTTG CAAAAATCAT AACCATCATA ATCTAAATGT GTGATGCATA GTATCTTTAT TGGTGGAAAC GTTTTCTGCT
GCAGTTAGCT TTCTGCACCA CGTGCAGCTG TGATCCTACA CTGCAGATTG TGGAATCATG TTCTTATTAT TTTACATGAA
AAAATGTATT GACTTGTGCA GTTGTATTAC TGTTTTTGAA TATGTTTTTA TTTTACAACT ATGTCCATGC AGGCTGTGGG
GGAACAGGCA ATATAATGTG TGCAGAATGT GGCGGACGAG GTCATCTGGG ACCCAAATGA TCAAGTCCTG ACCTTTTTTA
ATTTTGTTGT ACCACCAATA TATAGTCTTT TGGCTGATAT TGCATGTAAC CATTTTATTT TTATTGTTTT GTAAATCAAG
GAGTCTTGAT GACTGAAAAA AAATAAGATA TTTACAAAAA TCTCTGCTAT TCCTAAAGCA TGAGCTTGTG GTCAGATCAG
ATGACTGTCA TATTTATTCT TAATTATTCG ATTCCTCGAG GCACTTTATT TTGCTCACAG TGATGATTAC TTGTAATAAT
ACTTTTACAT GAAAGATACA TACAGTTGAT TTATTTCTTT AAGGAAAATG TTTCATGCCC CTTTGATTTG TA

>Vigan.04G247200.01
AATAAATGGG CCTCACTAAG TCCGTAAGCT GAATCCGAAT TCAAGCTCGG ACGTAGAATT CGGGTATTCC ACGACCCATG
GACCCGCGTC GTGAACTTCG AGACCCAATT GATGAAACAA GCGATTTGTA CGATGAAGAG TGTTGCTTGA ACCATTTGAG
CTTTGCATGT TCATTCGGCA CCGATGGATT CAGCTTCTAT GCAAGTAGCC ACCTCAAAAA ATTTTCTTTG CCCAAATGCT
TCAGTGGCGA AGGTTGCAGG TTCCAAGAAG ATTGCCACCG TCAATTTCAG GTCCAAATTC AAAGGATGTG AAACCAAAAT
CCATGTCGTT TCCTCAAATG GTTCTGTCTC TAGCTGCTCT TCGCGTCCGT CTGTGTCAAG TTTGAAGGCA GATGATAACA
AACGCAGAAG TAATCTTGAA TCTCTGTTTT GTTATGATAA AGCTATTCCA GAAGAAATAA TTGAGAAGCC TATTGGGCTA
TCTTTGGAAG AGAAATCTAT TGGTAACAAT CCCCGATGCA CTGATTGCGA GGCCAAAGGT GCTGTGCTTT GTGTCACTTG
TGCTGGTTCT GGTCTATATG TTGATTCCAT ATTGGAAAGC CAGGGCATAA TTGTTAAAGT TCGTTGCTTA GGCTGTGGGG
GAACAGGCAA TATAATGTGT GCAGAATGTG GCGGACGAGG TCATCTGGGA CCCAAATGAT CAAGTCCTGA CCTTTTTTAA
TTTTGTTGTA CCACCAATAT ATAGTCTTTT GGCTGATATT GCATGTAACC ATTTTATTTT TATTGTTTTG TAAATCAAGG
AGTCTTGATG ACTGAAAAAA AATAAGATAT TTACAAAAAT CTCTGCTATT CCTAAAGCAT GAGCTTGTGG TCAGATCAGA
TGACTGTCAT ATTTATTCTT AATTATTCGA TTCCTCGAGG CACTTTATTT TGCTCACAGT GATGATTACT TGTAATAATA
CTTTTACATG AAAGATACAT ACAGTTGATT TATTTCTTTA AGGAAAATGT TTCATGCCCC TTTGATTTGT A

>Vigan.04G247200.01
ATGGATTCAG CTTCTATGCA AGTAGCCACC TCAAAAAATT TTCTTTGCCC AAATGCTTCA GTGGCGAAGG TTGCAGGTTC
CAAGAAGATT GCCACCGTCA ATTTCAGGTC CAAATTCAAA GGATGTGAAA CCAAAATCCA TGTCGTTTCC TCAAATGGTT
CTGTCTCTAG CTGCTCTTCG CGTCCGTCTG TGTCAAGTTT GAAGGCAGAT GATAACAAAC GCAGAAGTAA TCTTGAATCT
CTGTTTTGTT ATGATAAAGC TATTCCAGAA GAAATAATTG AGAAGCCTAT TGGGCTATCT TTGGAAGAGA AATCTATTGG
TAACAATCCC CGATGCACTG ATTGCGAGGC CAAAGGTGCT GTGCTTTGTG TCACTTGTGC TGGTTCTGGT CTATATGTTG
ATTCCATATT GGAAAGCCAG GGCATAATTG TTAAAGTTCG TTGCTTAGGC TGTGGGGGAA CAGGCAATAT AATGTGTGCA
GAATGTGGCG GACGAGGTCA TCTGGGACCC AAATGA

>Vigan.04G247200.01
MDSASMQVAT SKNFLCPNAS VAKVAGSKKI ATVNFRSKFK GCETKIHVVS SNGSVSSCSS RPSVSSLKAD DNKRRSNLES
LFCYDKAIPE EIIEKPIGLS LEEKSIGNNP RCTDCEAKGA VLCVTCAGSG LYVDSILESQ GIIVKVRCLG CGGTGNIMCA
ECGGRGHLGP K*