VIGGS:GBrowse

Vigan.04G237300.01

Basic Information:

Name:	Vigan.04G237300.01 Multiple alignment Variant Information
Position:	Chr04:34955955..34958217 (+ strand)
Length:	2263

Functional Information:

Description:	Similar to Transcriptional factor NAC11. [B9U5I1, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO:	Molecular Function: DNA binding (GO:0003677)
InterPro:	NAC domain (IPR003441)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:5.35,0.67,18.14,67.75,8.73,10.66,1.31,3.61
Arabidopsis thaliana homolog:	AT3G04070.1

Automatic updates:

Name:	NM_001249213 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max transcriptional factor NAC11 (NAC11), mRNA.
PubMed ID:	30619426 NCBI(pubmed)
PubMed ID:	21707801 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001251132 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max NAC domain protein (NAC12), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:34955955..34956290 (+ strand)
Length:	336
Type:	five_prime_UTR

Position:	Chr04:34956291..34956453 (+ strand)
Length:	163
Type:	CDS

Position:	Chr04:34956646..34956944 (+ strand)
Length:	299
Type:	CDS

Position:	Chr04:34957151..34957741 (+ strand)
Length:	591
Type:	CDS

Position:	Chr04:34957742..34958217 (+ strand)
Length:	476
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.04G237300.01 class=Sequence position=Chr04:34955955..34958217 (+ strand)
AATTGGGCCA TTATCGAGTG AGAAAGTTTG TCTTGGTAGA TGGCTGTTGT TGTGGCTAGC CATCACCAAT TCCTCATTTC
TTAGCTCACT TTAATGGTCC CCACTTGCAA ATTTCTTGAA CTCATCTCTT CTTCTCTCGT TCATGCCCCC TTCCCATCTC
AACCTAATCT CTTTCCACAT GGCGACAAAA TCCCACAACC ATAAAATCCC CTCTCTTCTC CCCATCCCAA AAATTTCAAT
CCTCTCTTTC CCTCTTTTGC ATGCCTTTTT CAACCACCCT TTAGCCATTT CTCTTCTTTT TCTCTCTTCA TTCTCTCCCT
CACCAACCCC CACATAATGG GAAGCCCTCA ATCCAATTTG CCACCTGGTT TTAGGTTCCA CCCAACAGAT GAAGAACTCA
TTCTTCACTA CCTTAGTAAA AGGGTTGCAT CCATTCCCTT ACCCGTTTCC ATCATTGCTG AGGTTGATAT CTACAAGTTA
GATCCATGGG ACTTGCCAGG TTTCTCTCTC TTCCACTCCC TTTGTTTTTT GTTGCCAACC ATAAACAATC AATAATGCAT
CACCCCTTTG CCAATCTAGT TTGAATGTGA TGAGAAATGT GTTGAGATTA AAGAAAGAGT GAAAATTTTC AATTGGGTAT
TGTTCAAGTC CACTTATTTA TCAGTGTTTG TTTCATGTGG TTTTTCAACA GCAAAGGCAA CCTTTGGGGA GAAAGAATGG
TACTTTTTCA GTCCCAGAGA CCGGAAGTAC CCAAACGGTG CAAGGCCAAA CAGGGCAGCT GCTTCAGGGT ATTGGAAGGC
CACTGGCACA GATAAGACCA TAGTCACATC ATTGCAGGGT GGATCAGTCC AAGAGAACAT TGGTGTGAAG AAGGCTTTGG
TGTTCTACAA AGGAAGACCC CCAAAGGGTG TCAAGACCAA TTGGATCATG CATGAATATC GCCTTGTAGA CAACAACAAA
CCCATTAAGC TCAAAGACTC CTCCATGAGA GTAAGTCCCC TACCAAAATT ACTTTCATTA CATTTTTTTG TTGATTCTTA
ATATTGTAGA ATGTAAAAAA CGAACTATCT TGTTTAATTT ACCAGTCAAG CTTGATAATG TGTCATGCAT GTAGAGATTC
ATTGGATCAT GTAATGATTT CTTGTTAACA ACACGACATG TTGTTGGGTT CTGATATGCA TTAACTGTTG TTGCAGTTGG
ACGATTGGGT GCTGTGTCGG ATTTACAAGA AGTCCAAACA TGCTCTAACT TCAACAGAGG CAGGAATAGG AGTTGGTGAG
GTGGATCAAG CAGAGGAGCA GCAATTCAAT GAGACCCTTT TGCCAATCTT AAAATCTCCA ATACCTCCTC CTCAGAACAC
ATTGATGTCT CAAAAATCTG TCTCCTTCTC CAACCTGTTG GATGCCATGG ACTACTCTGT ACTCAGCAGT TTCTTATCTG
AGAACCATTC CAACCCACCA GGGATCGGAT CAAGTGCAGG CTTCAACACT GAGAATTTGG AACAGCAATC TTCTCCGATG
AACAACCCCA ACAATAGCTA CACGTTTCAG AAGAACACCC AATTGAACCC TTCACTCTCC AACATGGAAA ACATGAGGCC
AAAGCGCCAA TTTTCAAGCA TTGATGATGA AACTCTGTAC CCATCCAAGA AATACCTGAC TTCCTCTTGC AACTTTCCTT
CCCACATCAA CCCCCAATAC GAGAATCCAC AATGGAACTA CCTCGTCAAA CAGTCTTTGC TGAATCAGCG GTTACTGCTT
GGTCCTCAGC TTCAATTTCA AGGATAATCC AAACATACCA ACAACTTATT AAATCAGAAA AAAACAAAAT TGAAATAGAA
AAATTACATA GAAGTAAAAT ATTCAAAAGC TGAGCCCACC AAAGAACACA CCAATTTGAT CACTAGATAA GAAGGTTTAG
TAATTTAGCA CATAGATATT GTTATAGCGT TTTTTTTTTT TTTGGTTTTC TTTTAATTAA TTTGTGCTGG AAAACGAAGA
ATAGAAGGTA GCTTGAAAGG AGTAACAGTT TGGTATAGAA TCAAACAAAT ATTCCATCAT TCAAGGGGTG AAGAAACTGT
AGAAACAAAA TATCCAAGTT TCTATGACAA ATCAAAACAA TTTGTGTACA GAATGTTTAT TTGTACGTGT TTGGATTTGG
AGGTTAGCTT TATTATATAC TTTGTAGATA AGGTATTGTA CTTGATTGTG TTGATATTTC TCATTCTTTT CCTTGAAAGG
ATAGCTGGCT ACGAATTTTC TTT

[show][hide][copy]TRANSCRIPT

>Vigan.04G237300.01
AATTGGGCCA TTATCGAGTG AGAAAGTTTG TCTTGGTAGA TGGCTGTTGT TGTGGCTAGC CATCACCAAT TCCTCATTTC
TTAGCTCACT TTAATGGTCC CCACTTGCAA ATTTCTTGAA CTCATCTCTT CTTCTCTCGT TCATGCCCCC TTCCCATCTC
AACCTAATCT CTTTCCACAT GGCGACAAAA TCCCACAACC ATAAAATCCC CTCTCTTCTC CCCATCCCAA AAATTTCAAT
CCTCTCTTTC CCTCTTTTGC ATGCCTTTTT CAACCACCCT TTAGCCATTT CTCTTCTTTT TCTCTCTTCA TTCTCTCCCT
CACCAACCCC CACATAATGG GAAGCCCTCA ATCCAATTTG CCACCTGGTT TTAGGTTCCA CCCAACAGAT GAAGAACTCA
TTCTTCACTA CCTTAGTAAA AGGGTTGCAT CCATTCCCTT ACCCGTTTCC ATCATTGCTG AGGTTGATAT CTACAAGTTA
GATCCATGGG ACTTGCCAGC AAAGGCAACC TTTGGGGAGA AAGAATGGTA CTTTTTCAGT CCCAGAGACC GGAAGTACCC
AAACGGTGCA AGGCCAAACA GGGCAGCTGC TTCAGGGTAT TGGAAGGCCA CTGGCACAGA TAAGACCATA GTCACATCAT
TGCAGGGTGG ATCAGTCCAA GAGAACATTG GTGTGAAGAA GGCTTTGGTG TTCTACAAAG GAAGACCCCC AAAGGGTGTC
AAGACCAATT GGATCATGCA TGAATATCGC CTTGTAGACA ACAACAAACC CATTAAGCTC AAAGACTCCT CCATGAGATT
GGACGATTGG GTGCTGTGTC GGATTTACAA GAAGTCCAAA CATGCTCTAA CTTCAACAGA GGCAGGAATA GGAGTTGGTG
AGGTGGATCA AGCAGAGGAG CAGCAATTCA ATGAGACCCT TTTGCCAATC TTAAAATCTC CAATACCTCC TCCTCAGAAC
ACATTGATGT CTCAAAAATC TGTCTCCTTC TCCAACCTGT TGGATGCCAT GGACTACTCT GTACTCAGCA GTTTCTTATC
TGAGAACCAT TCCAACCCAC CAGGGATCGG ATCAAGTGCA GGCTTCAACA CTGAGAATTT GGAACAGCAA TCTTCTCCGA
TGAACAACCC CAACAATAGC TACACGTTTC AGAAGAACAC CCAATTGAAC CCTTCACTCT CCAACATGGA AAACATGAGG
CCAAAGCGCC AATTTTCAAG CATTGATGAT GAAACTCTGT ACCCATCCAA GAAATACCTG ACTTCCTCTT GCAACTTTCC
TTCCCACATC AACCCCCAAT ACGAGAATCC ACAATGGAAC TACCTCGTCA AACAGTCTTT GCTGAATCAG CGGTTACTGC
TTGGTCCTCA GCTTCAATTT CAAGGATAAT CCAAACATAC CAACAACTTA TTAAATCAGA AAAAAACAAA ATTGAAATAG
AAAAATTACA TAGAAGTAAA ATATTCAAAA GCTGAGCCCA CCAAAGAACA CACCAATTTG ATCACTAGAT AAGAAGGTTT
AGTAATTTAG CACATAGATA TTGTTATAGC GTTTTTTTTT TTTTTGGTTT TCTTTTAATT AATTTGTGCT GGAAAACGAA
GAATAGAAGG TAGCTTGAAA GGAGTAACAG TTTGGTATAG AATCAAACAA ATATTCCATC ATTCAAGGGG TGAAGAAACT
GTAGAAACAA AATATCCAAG TTTCTATGAC AAATCAAAAC AATTTGTGTA CAGAATGTTT ATTTGTACGT GTTTGGATTT
GGAGGTTAGC TTTATTATAT ACTTTGTAGA TAAGGTATTG TACTTGATTG TGTTGATATT TCTCATTCTT TTCCTTGAAA
GGATAGCTGG CTACGAATTT TCTTT

[show][hide][copy]CDS

>Vigan.04G237300.01
ATGGGAAGCC CTCAATCCAA TTTGCCACCT GGTTTTAGGT TCCACCCAAC AGATGAAGAA CTCATTCTTC ACTACCTTAG
TAAAAGGGTT GCATCCATTC CCTTACCCGT TTCCATCATT GCTGAGGTTG ATATCTACAA GTTAGATCCA TGGGACTTGC
CAGCAAAGGC AACCTTTGGG GAGAAAGAAT GGTACTTTTT CAGTCCCAGA GACCGGAAGT ACCCAAACGG TGCAAGGCCA
AACAGGGCAG CTGCTTCAGG GTATTGGAAG GCCACTGGCA CAGATAAGAC CATAGTCACA TCATTGCAGG GTGGATCAGT
CCAAGAGAAC ATTGGTGTGA AGAAGGCTTT GGTGTTCTAC AAAGGAAGAC CCCCAAAGGG TGTCAAGACC AATTGGATCA
TGCATGAATA TCGCCTTGTA GACAACAACA AACCCATTAA GCTCAAAGAC TCCTCCATGA GATTGGACGA TTGGGTGCTG
TGTCGGATTT ACAAGAAGTC CAAACATGCT CTAACTTCAA CAGAGGCAGG AATAGGAGTT GGTGAGGTGG ATCAAGCAGA
GGAGCAGCAA TTCAATGAGA CCCTTTTGCC AATCTTAAAA TCTCCAATAC CTCCTCCTCA GAACACATTG ATGTCTCAAA
AATCTGTCTC CTTCTCCAAC CTGTTGGATG CCATGGACTA CTCTGTACTC AGCAGTTTCT TATCTGAGAA CCATTCCAAC
CCACCAGGGA TCGGATCAAG TGCAGGCTTC AACACTGAGA ATTTGGAACA GCAATCTTCT CCGATGAACA ACCCCAACAA
TAGCTACACG TTTCAGAAGA ACACCCAATT GAACCCTTCA CTCTCCAACA TGGAAAACAT GAGGCCAAAG CGCCAATTTT
CAAGCATTGA TGATGAAACT CTGTACCCAT CCAAGAAATA CCTGACTTCC TCTTGCAACT TTCCTTCCCA CATCAACCCC
CAATACGAGA ATCCACAATG GAACTACCTC GTCAAACAGT CTTTGCTGAA TCAGCGGTTA CTGCTTGGTC CTCAGCTTCA
ATTTCAAGGA TAA

[show][hide][copy]PROTEIN

>Vigan.04G237300.01
MGSPQSNLPP GFRFHPTDEE LILHYLSKRV ASIPLPVSII AEVDIYKLDP WDLPAKATFG EKEWYFFSPR DRKYPNGARP
NRAAASGYWK ATGTDKTIVT SLQGGSVQEN IGVKKALVFY KGRPPKGVKT NWIMHEYRLV DNNKPIKLKD SSMRLDDWVL
CRIYKKSKHA LTSTEAGIGV GEVDQAEEQQ FNETLLPILK SPIPPPQNTL MSQKSVSFSN LLDAMDYSVL SSFLSENHSN
PPGIGSSAGF NTENLEQQSS PMNNPNNSYT FQKNTQLNPS LSNMENMRPK RQFSSIDDET LYPSKKYLTS SCNFPSHINP
QYENPQWNYL VKQSLLNQRL LLGPQLQFQG *