GBrowse Details

Vigan.04G236100.01

Basic Information:
Name: Vigan.04G236100.01
Multiple alignment
Variant Information
Position: Chr04:34811914..34815462 (+ strand)
Length: 3549
Functional Information:
Description: Similar to uncharacterized protein. [C6TJL0, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Major intrinsic protein (IPR000425)
Aquaporin-like (IPR023271)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.74,10.43,53.83,51.63,79.51,82.81,105.19,26.38
Automatic updates:
Name: NM_001255806 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aquaporin SIP1-2-like (LOC100792787), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001289293 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aquaporin SIP1-2-like (LOC102669186), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:34811914..34812249 (+ strand)
Length: 336
Type: five_prime_UTR
Position: Chr04:34812250..34812564 (+ strand)
Length: 315
Type: CDS
Position: Chr04:34813594..34813866 (+ strand)
Length: 273
Type: CDS
Position: Chr04:34814981..34815139 (+ strand)
Length: 159
Type: CDS
Position: Chr04:34815140..34815462 (+ strand)
Length: 323
Type: three_prime_UTR

>Vigan.04G236100.01 class=Sequence position=Chr04:34811914..34815462 (+ strand)
AACAAACCAG ATGGTACCGG TTACCGCAGG TTGTTTTGGC GGAGCCTATC TGTTTTCGGG TACGCTCCAT GTTGGACGGC
ACCTACCACT GATTAGGTGA ATCACTCGCA TTTTCTTCTA TACTCTCCAT CAACATCAAA GATCCATGCT TTCTTAATTA
TCCCCTAACT CTATCTCCCA TTCATCCTCA CAAACACCTT TTCTTCTCTT TCTCCCTCTG CTATCGCCAC TGCTTCATCA
CTCACCGGTG CCACTATCAC CGGTTGAGTG ACGCATAGCT TCTCCAATTC TACGTTTTCT CTTCAATTTT CCAAAGGGGT
GAAGAAAAAA TCAAAGATGG TTGGTGCCAT AAAAGCTGCG ATTGGAGACG GGGTGTTGAC TTTCATGTGG GTGTTTTGTT
CTTCTCTGTT GGGGATTGCT TCTGGGTACG TAACTAAAGC CCTTAACCTT CAAGACATCT CCTACAACGG GTTCCCTTAC
CCTTCTCTCA TTGTCACCAT TACCCTCGTT TTTGTACTTG TTTTCCTTTT CACCCTCATC GGCAATGCCC TCGGTGGCGC
CAGCTTCAAC CCCACCGGCA CCGCTTCCTT TTACGCCGTT GGTCTCGGCT CTGATACGCT CCTCTCAATG GCGCTTCGTT
TCCCTGCCCA GGTTCGTTGA TTTCCTTTTG TGTCCTATAG GGTCTTTAAC TTTTCTCTCT TCTCTCTGTA TGGCGTCGCT
AGTACAATTG AATTTATAGG CGCTATGACA TGAGATCCTG AATTGAAGGA TATTTTTTGA AGATATAAGT CATTGTAAAT
TGACCATCAA ATAAGCTAAA GACCTTGTGA TTAAACTGAT ATATCAACGT ATATTTAAGT GGAATTTTTT AGCAGTTTAT
TTGACATTAT TTAGTTATTT CTTAACTTAG GAATCGTACA GTCACGAGAC GAGGATTAAA ATGACCATTT ACTCTGTTGA
ATTGCTTTTA AGTTAACCTT TTTTTTTCTG TCCTTTTGGC CTTCTTTTTC TTTCTACTCT TTCTAGGAAA TGCGTGGATG
TAGATAAGGA GGAGGAGGAG TTAAATATGG GTCTTGTTAT ATGCTATGTT GTTTTCATTT TTAATTTACA AGACAACCTG
ATTTTCAACA GTTCTTCTAT TAATATTTGA AGATTTAAAA CCCAATTGCT ACTTTTGTAC CTTTATGGTG AAAACATGAA
ACGAAAGCAA AAGTAAACGT GCCCTTGAAT TGTTGTTTTT AAATTAATTA TTCTTTTTTA TCACTTTTTT ATATGCAAAT
TAATAAGATA AACATGCTAT TTCTCTTTTT CTTTCCTTTA TTCACTCTAT CTGAACATAC TATTAGTATT GTTTTTCTAT
CAAAATGTTT TAGTAATCTG CCCAGTAAGA ATTTGCATTA GAGTTCAACA CAGGTTCTAG AGCAGAATTT CTATTTTGAT
TGGAGAATAC CGCCAAACAT ACCATTATTG TAACTCTCTT GTTAGAGTGG AAGTTTCATT TTAGTAATCT GTCTGATAAG
GATTTGGATT AAAGGTTGAG GTATAGACCC TTTACGTTAT AGAGATAAAA CATCAATTTT AACAAAAAGT ATCACCAAAA
GGCCTAAGAA AATGCTTCTA TGTTTTTTTC TGTTATGAAT TGTGCAAGGA AATTTTGATG GATGGATGAG TTGTGAACAG
GCAGTTGGTG CTGCTGGTGG TGCAATGGCA ATTATGGAAG TGGTTCCTCA AAAGTATAGG CATATGATTG GAGGTCCTTC
TCTGAAAGTG GATTTGCATA CTGGGGCTGT TGTTGAAGGG GTGTTGACCT TTTTTATTAC CTTTATCGTT CTCTTCATCT
TCCTCAAGGG CCCTCGTAGT GATTTGTTGA AGATCTGGTT TCTAGCCACA GCAACTGTAG TTTTGGTCAT GGTTGGATCT
GCCTACACTG GCCCAGCCAT GAATCCTGCC AATGTGAGTG ATTACCTCTT TACAATTGCC AGTTTTATTT TTTTCATACA
TTTAATTGTA TGTGTTTCTT GCTGCTGTCT TTACAATTGC TGTCTTTTGC ATTGATTCTA GGGTGATTTG AATGATTATT
TTGAAAAACT GCTTAATTTT GACCTCAAGA TTGTATTGGT AGGACATTAT AGTCTATGAA AATTTAAGAA TATTCATTTT
AGTTCTTTAT TCTTTGGTGT CAAATTTATA CACAAAAGTG AGTGAATCCG TCTTTAAAAT CTCAAGTGTC AGTGTTAAAA
AGTGCTTCAC CGATACAATT TAATAGACTA ATCATCATAT CTTATTCACC TTATCAAAGA ATTTTGTTAT AAATGTATAT
TGAGTTTGAA ACATTATATT GTAAATTGCC TTTTTTTTTA AACCATTTCT GCCCAGGATT TGTTGTTAAG GATTCTGGAA
TCTAATTCTT GCACCAGACT TTAATTAAGA AAATATTATG CTTTGTTTTT GCAACTTTAT TCAGCTATGG AACATGTCAG
TCATATGTAT GCTGCAGCTA TCCTCCTTTC CTCTGTGTCC GATCTTTATT GTGTTATTTA ACTGTCAAAT CCTATTGTAA
TCTCGGCAAA GTTTCTACAA TTTTGATGTT CTATAAATCG AAACAAACTA CTCACAGTAA AAAGACAATC TCTTTGTCAT
TACATGCTTA TTTACGGTGT TTCCTTTATA TGCCGAATAT ATCAAACCCG AATAGATAAT GTTCTGGCCA ATCTAAATCT
ATGGAACTCT GGCACACTGT TCTGTGGTCT CATTGTGCTG TGTTCTGTTT ATGTTAAAGA AGGGTCTATG TTCTGTTTTA
TATTATTATT GTTATTATGT TTCTACTTTT TGTTTTGTTT TGTTCAGATA GGAAACCTTT TATGTTGCTC TTCCTTGCTA
AAGTTTCGTT TTTCTTGTCT TTCATATTAC TTGCTCTTGC TATTAACTTG TGTATGGCTT AAAATGATGA CTTGTAATTA
TTAGCTATGA AGGTTATATC TTGTTATGTG CATTGTTTCT TGAATCTTTT GGAGGGGCAA ACTTAGAGAT GGCAATGAAA
AACTGTGATC GGTTATTTTG TTTGCAGGCT TTTGGTTGGG CTTACTTAAA CAATTGGCAC AACACATGGG ACCAATTGTA
TGTATACTGG ATTTGCCCCT TTGCCGGAGC AATATTGGCA GCATGGTTGT TCCGTGCAAT CTTTCCCCCA CCACCACCGC
CAGAACTCAA ACAAAAGAAA GCATGAAGAA GGATTCGGTC ATTTGCTTCT TCATTTCAAT TGTTAAGCAC AATGTTACTG
CTGCATTACC CTTTTAATCT ATATATCTCC TTCTTCATTC TCTTTTCTGT TACTGGGTTA TGTTTAGTCC GTAAATGCAG
TATCCTCGTA GAAAAAATAA TGTAGAATTT CCGTATCTGT ACTGGATACT GATTTAATTA ACATTAATGT TATTCCTTTC
TAGCAAAAAA ACCAATTATG TTTTGGTGAA TAATGTACCA TGAATTTAAT TTAACATGCT ATATTTTGTT TCTTTTCTAA
GCTATGAGGA AGGATCAAGT CGAACTAAA

>Vigan.04G236100.01
AACAAACCAG ATGGTACCGG TTACCGCAGG TTGTTTTGGC GGAGCCTATC TGTTTTCGGG TACGCTCCAT GTTGGACGGC
ACCTACCACT GATTAGGTGA ATCACTCGCA TTTTCTTCTA TACTCTCCAT CAACATCAAA GATCCATGCT TTCTTAATTA
TCCCCTAACT CTATCTCCCA TTCATCCTCA CAAACACCTT TTCTTCTCTT TCTCCCTCTG CTATCGCCAC TGCTTCATCA
CTCACCGGTG CCACTATCAC CGGTTGAGTG ACGCATAGCT TCTCCAATTC TACGTTTTCT CTTCAATTTT CCAAAGGGGT
GAAGAAAAAA TCAAAGATGG TTGGTGCCAT AAAAGCTGCG ATTGGAGACG GGGTGTTGAC TTTCATGTGG GTGTTTTGTT
CTTCTCTGTT GGGGATTGCT TCTGGGTACG TAACTAAAGC CCTTAACCTT CAAGACATCT CCTACAACGG GTTCCCTTAC
CCTTCTCTCA TTGTCACCAT TACCCTCGTT TTTGTACTTG TTTTCCTTTT CACCCTCATC GGCAATGCCC TCGGTGGCGC
CAGCTTCAAC CCCACCGGCA CCGCTTCCTT TTACGCCGTT GGTCTCGGCT CTGATACGCT CCTCTCAATG GCGCTTCGTT
TCCCTGCCCA GGCAGTTGGT GCTGCTGGTG GTGCAATGGC AATTATGGAA GTGGTTCCTC AAAAGTATAG GCATATGATT
GGAGGTCCTT CTCTGAAAGT GGATTTGCAT ACTGGGGCTG TTGTTGAAGG GGTGTTGACC TTTTTTATTA CCTTTATCGT
TCTCTTCATC TTCCTCAAGG GCCCTCGTAG TGATTTGTTG AAGATCTGGT TTCTAGCCAC AGCAACTGTA GTTTTGGTCA
TGGTTGGATC TGCCTACACT GGCCCAGCCA TGAATCCTGC CAATGCTTTT GGTTGGGCTT ACTTAAACAA TTGGCACAAC
ACATGGGACC AATTGTATGT ATACTGGATT TGCCCCTTTG CCGGAGCAAT ATTGGCAGCA TGGTTGTTCC GTGCAATCTT
TCCCCCACCA CCACCGCCAG AACTCAAACA AAAGAAAGCA TGAAGAAGGA TTCGGTCATT TGCTTCTTCA TTTCAATTGT
TAAGCACAAT GTTACTGCTG CATTACCCTT TTAATCTATA TATCTCCTTC TTCATTCTCT TTTCTGTTAC TGGGTTATGT
TTAGTCCGTA AATGCAGTAT CCTCGTAGAA AAAATAATGT AGAATTTCCG TATCTGTACT GGATACTGAT TTAATTAACA
TTAATGTTAT TCCTTTCTAG CAAAAAAACC AATTATGTTT TGGTGAATAA TGTACCATGA ATTTAATTTA ACATGCTATA
TTTTGTTTCT TTTCTAAGCT ATGAGGAAGG ATCAAGTCGA ACTAAA

>Vigan.04G236100.01
ATGGTTGGTG CCATAAAAGC TGCGATTGGA GACGGGGTGT TGACTTTCAT GTGGGTGTTT TGTTCTTCTC TGTTGGGGAT
TGCTTCTGGG TACGTAACTA AAGCCCTTAA CCTTCAAGAC ATCTCCTACA ACGGGTTCCC TTACCCTTCT CTCATTGTCA
CCATTACCCT CGTTTTTGTA CTTGTTTTCC TTTTCACCCT CATCGGCAAT GCCCTCGGTG GCGCCAGCTT CAACCCCACC
GGCACCGCTT CCTTTTACGC CGTTGGTCTC GGCTCTGATA CGCTCCTCTC AATGGCGCTT CGTTTCCCTG CCCAGGCAGT
TGGTGCTGCT GGTGGTGCAA TGGCAATTAT GGAAGTGGTT CCTCAAAAGT ATAGGCATAT GATTGGAGGT CCTTCTCTGA
AAGTGGATTT GCATACTGGG GCTGTTGTTG AAGGGGTGTT GACCTTTTTT ATTACCTTTA TCGTTCTCTT CATCTTCCTC
AAGGGCCCTC GTAGTGATTT GTTGAAGATC TGGTTTCTAG CCACAGCAAC TGTAGTTTTG GTCATGGTTG GATCTGCCTA
CACTGGCCCA GCCATGAATC CTGCCAATGC TTTTGGTTGG GCTTACTTAA ACAATTGGCA CAACACATGG GACCAATTGT
ATGTATACTG GATTTGCCCC TTTGCCGGAG CAATATTGGC AGCATGGTTG TTCCGTGCAA TCTTTCCCCC ACCACCACCG
CCAGAACTCA AACAAAAGAA AGCATGA

>Vigan.04G236100.01
MVGAIKAAIG DGVLTFMWVF CSSLLGIASG YVTKALNLQD ISYNGFPYPS LIVTITLVFV LVFLFTLIGN ALGGASFNPT
GTASFYAVGL GSDTLLSMAL RFPAQAVGAA GGAMAIMEVV PQKYRHMIGG PSLKVDLHTG AVVEGVLTFF ITFIVLFIFL
KGPRSDLLKI WFLATATVVL VMVGSAYTGP AMNPANAFGW AYLNNWHNTW DQLYVYWICP FAGAILAAWL FRAIFPPPPP
PELKQKKA*