GBrowse Details

Vigan.04G235300.01

Basic Information:
Name: Vigan.04G235300.01
Multiple alignment
Variant Information
Position: Chr04:34720730..34723429 (+ strand)
Length: 2700
Functional Information:
Description: Similar to Flowering locus T-like protein 2. [E3NYP2, Glycine max]
InterPro: Phosphatidylethanolamine-binding, conserved site (IPR001858)
Phosphatidylethanolamine-binding protein PEBP (IPR008914)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.03,2.94,0.00,1.71,0.00,0.00
Automatic updates:
Name: GU065341 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula cultivar Jemalong6 FTa mRNA, partial cds.
PubMed ID: -
Status: Known Variant
Name: NM_001253077 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein FLOWERING LOCUS T-like (FT3A), mRNA.
PubMed ID: 30894121 NCBI(pubmed)
29120038 NCBI(pubmed)
28338712 NCBI(pubmed)
20864544 NCBI(pubmed)
Status: Known Variant
Name: NM_001255750 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein FLOWERING LOCUS T-like (FT3B), mRNA.
PubMed ID: 30894121 NCBI(pubmed)
29120038 NCBI(pubmed)
28338712 NCBI(pubmed)
20864544 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:34720730..34720841 (+ strand)
Length: 112
Type: five_prime_UTR
Position: Chr04:34720842..34721042 (+ strand)
Length: 201
Type: CDS
Position: Chr04:34721223..34721284 (+ strand)
Length: 62
Type: CDS
Position: Chr04:34721378..34721418 (+ strand)
Length: 41
Type: CDS
Position: Chr04:34723028..34723251 (+ strand)
Length: 224
Type: CDS
Position: Chr04:34723252..34723429 (+ strand)
Length: 178
Type: three_prime_UTR

>Vigan.04G235300.01 class=Sequence position=Chr04:34720730..34723429 (+ strand)
TAAGAATATC TCATTCCTTG TCCTTCACTC TATAAATAGC TACCATTGTG GGTGTAGTAA ATGTGTGTGA GCCAAAGGCA
TATCTGTGTT TAGCAGTGAG TTACAGTTAG CCATGCCTAG TACTAGTAGG AATCCTCTTG TGGTTGGGCG TGTTATAGGG
GAAGTTATAG ACCCCTTTGA ATGTTCCATT CCTTTTAGGG TCTCCTATGG CAATAGAGAG GTCAACAATG GTTGTGAGCT
TAAACCTTCC CAAGTTGTAA ACCAACCCAG AGTGACTGTT GGTGGAGATG ATCTCAGGAA CTTCTATACT CTGGTAATTC
ATTGCATTAC TTTCTTCTTA TAGGATTTGG ATACACACAA CCTAAAAGTG TTTGCCAAAA CTTCTTCATT AAAAACACCA
AACCCTTTTT CATAATAAAG GTTTTCAGAA ACACTTCCAG ATATTTATTT CGTCACTTCT AACTTCAAAT CTGTTCATTT
TCTTCTGTTA AAGGTGTTGG TAGATCCTGA TGCTCCCAGC CCTAGTAACC CTAATTCCAG GGAGTACCTT CATTGGTGAG
TAAATAAGAC ATACTCATTA TTTTCTAGCA TGACATTAGT AGCATATCAT TGTGATAACA TTCTTTTTTT TCAATGGATT
TTGAGCAGGT TGGTGACTGA TATTCCAGCA ACTACCGGCG CTAGTTTTGG TGTGTAGTTA ACTTGAAAAA ATAAATAAAT
AAAACCTCTA ATAATAATTA GTCAATTGTA AAAAGAAGAA AAAAAAATAT GGTTAAAAAT GCACGAATTT TATTTTACTA
ACTCATCAAA TGTATAGTTT AATGTGAATT TAACCCACTT ATACGTATTC GTAAAATATT CATATGTAGA ACAGTAATGT
GCTTAATTTG ATAAATTTAT GGATTCCAGA GGTTTAACTT TTGAATTACG TGGGATTTTC CAAAATTAAT TATAATTCCT
TGAAAATTAA ATTGATATAC GAATTAGGAT TGTCTTTCTT AGTCTAACTT ATTATCTCTA AACAAAAAAT ATAAGCTGTC
AGTATAAATA TTATGAATGC ATTAATATTA CTATATTAAT AGTTTATTGA TAATTCATAT TAATTCTCTG TGCTAATGGA
ATTGTCAGTT AGCATGATTT ATCATGCTTT TAGACTTTGT GTCTTAGTCT AAGATTATAA TAAAGTCGAC TGACCCAATG
TCATAGTAGT AGAATATAAC TTTTTTTAAC TCATCTGGTA TGCTGAGTTT TAAATTACCA TAACTGGAAT AAACACTAAA
TTAGCATCAA AATATTTGCT AAATGTTAAC TTAATGTATA ATTACTTTTT ATCAGCGTAC TTAAGAATAC ATGAATGGTC
TGGATTTTCT AGATTCTTTT CAGCCCTTTA TTTTGTTTCT TTTGAACTTT TTCTGTGTTG AAGCACTTAA TACTTTTTTA
ATATATATAT ATATATATAT ATATATATAT ATATAAAACT AAAGCTTTAG TTTAGAAGAT AGAGAAACAG TGCAAGCAAA
AACATATATA AAACTAATAG AGCTTAATTT TATATATCGT ACACGTGAAA ATATAAATTA ACTTTCTAAG CATTATAAAT
ATTTATTTTC GTACCTGCAT GTAAAATTAG TTACTTATGT GATGTCCTTA AAATCTAGTT CATGCTAGTT TTTATCGTAG
TTTTAATTTA TTTATTTGTT ATGTTTTTAA TTATAAAAAA TAATCCAACA ATTCTAGAAT TCATATAAGT GACGTTATCA
ATAATTATTT CATTTCAGCA AGAGTATAAA AATAAAAATA GTTTAAGAAT ATTTTGTGAT TTCATTGTTT TATGTTTCTT
GCAGCTACAT CACTGTGTTT GTTGATATAA AATTTTAACA AAAATAGTTA TAAGGTGAAT ATATAAAAGC CAATAAACTC
AACAATCGGA ATCTGCTGTG GAATTGCGAT CTTGTAGTTT GTCGACAAGT ATGCATTACA ATAATTCGAT TTTGGGAACT
ATGTATCACA TCATGCAGAA CATTGTTTCG TTTAGAATTT AAAAGTATTG GAATCGTTTA TGTGGACCAT GTTTCTTTAT
ATACTTGAAG TACAAATATT GTGTGTGATG CACAACATCA TCTCGTGGAA GAAATTGAAA TTGATTCCAC GAGGCATCAA
ATTCTAAATC GTGTATGATG AGACAAATGA CACCAGCCAT CAAAAGGATA AAAAGGCAAT TTCATGGGAA AGAACTGGTA
TAAGTGTATG GTTCAATTAT AACATGCTAA CTGGGTTTTT TGCATGATTT GCACGTAGGT AACGAGGTTG TAAGTTATGA
AAGTCCACGA CCAACTATGG GGATTCATCG TTTCGTGTTT GTGTTGTTCC GTCAACAGTA TCGACAGAGA GTGTATGCTC
CTGGATGGCG CCAGAATTTC AACACCAGAG AATTTGCTGA ACTTTACAAC CTTGGATTGC CAGCTGCTGC AGTGTTCTTC
AACTGTCAGA GGGAAACTGG TTCTGGTGGT AGGACATTTT GAAAGCTTCC TTGTACCAAA AGTGCATGTT TGGTCAATAT
GAAACACCTA AATAAAGAAA CCTACGCAAT ATATATGTAA CAACAATAGT ATCACACATT AGGTCATACG ATTATGTAAC
CAAAGCACTA TATATGTACC ACTTTATGTT TTAATATATT TATATACAAA TAAATTTGGA 

>Vigan.04G235300.01
TAAGAATATC TCATTCCTTG TCCTTCACTC TATAAATAGC TACCATTGTG GGTGTAGTAA ATGTGTGTGA GCCAAAGGCA
TATCTGTGTT TAGCAGTGAG TTACAGTTAG CCATGCCTAG TACTAGTAGG AATCCTCTTG TGGTTGGGCG TGTTATAGGG
GAAGTTATAG ACCCCTTTGA ATGTTCCATT CCTTTTAGGG TCTCCTATGG CAATAGAGAG GTCAACAATG GTTGTGAGCT
TAAACCTTCC CAAGTTGTAA ACCAACCCAG AGTGACTGTT GGTGGAGATG ATCTCAGGAA CTTCTATACT CTGGTGTTGG
TAGATCCTGA TGCTCCCAGC CCTAGTAACC CTAATTCCAG GGAGTACCTT CATTGGTTGG TGACTGATAT TCCAGCAACT
ACCGGCGCTA GTTTTGGTAA CGAGGTTGTA AGTTATGAAA GTCCACGACC AACTATGGGG ATTCATCGTT TCGTGTTTGT
GTTGTTCCGT CAACAGTATC GACAGAGAGT GTATGCTCCT GGATGGCGCC AGAATTTCAA CACCAGAGAA TTTGCTGAAC
TTTACAACCT TGGATTGCCA GCTGCTGCAG TGTTCTTCAA CTGTCAGAGG GAAACTGGTT CTGGTGGTAG GACATTTTGA
AAGCTTCCTT GTACCAAAAG TGCATGTTTG GTCAATATGA AACACCTAAA TAAAGAAACC TACGCAATAT ATATGTAACA
ACAATAGTAT CACACATTAG GTCATACGAT TATGTAACCA AAGCACTATA TATGTACCAC TTTATGTTTT AATATATTTA
TATACAAATA AATTTGGA

>Vigan.04G235300.01
ATGCCTAGTA CTAGTAGGAA TCCTCTTGTG GTTGGGCGTG TTATAGGGGA AGTTATAGAC CCCTTTGAAT GTTCCATTCC
TTTTAGGGTC TCCTATGGCA ATAGAGAGGT CAACAATGGT TGTGAGCTTA AACCTTCCCA AGTTGTAAAC CAACCCAGAG
TGACTGTTGG TGGAGATGAT CTCAGGAACT TCTATACTCT GGTGTTGGTA GATCCTGATG CTCCCAGCCC TAGTAACCCT
AATTCCAGGG AGTACCTTCA TTGGTTGGTG ACTGATATTC CAGCAACTAC CGGCGCTAGT TTTGGTAACG AGGTTGTAAG
TTATGAAAGT CCACGACCAA CTATGGGGAT TCATCGTTTC GTGTTTGTGT TGTTCCGTCA ACAGTATCGA CAGAGAGTGT
ATGCTCCTGG ATGGCGCCAG AATTTCAACA CCAGAGAATT TGCTGAACTT TACAACCTTG GATTGCCAGC TGCTGCAGTG
TTCTTCAACT GTCAGAGGGA AACTGGTTCT GGTGGTAGGA CATTTTGA

>Vigan.04G235300.01
MPSTSRNPLV VGRVIGEVID PFECSIPFRV SYGNREVNNG CELKPSQVVN QPRVTVGGDD LRNFYTLVLV DPDAPSPSNP
NSREYLHWLV TDIPATTGAS FGNEVVSYES PRPTMGIHRF VFVLFRQQYR QRVYAPGWRQ NFNTREFAEL YNLGLPAAAV
FFNCQRETGS GGRTF*