GBrowse Details

Vigan.04G232600.01

Basic Information:
Name: Vigan.04G232600.01
Multiple alignment
Variant Information
Position: Chr04:34259460..34263910 (+ strand)
Length: 4451
Functional Information:
Description: Similar to nudix hydrolase 12, mitochondrial-like isoform X2. [XP_004493101.1, Cicer arietinum]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: NUDIX hydrolase domain (IPR000086)
NUDIX hydrolase domain-like (IPR015797)
NUDIX hydrolase, conserved site (IPR020084)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.09,0.03,4.26,1.63,7.78,2.14,35.46,1.24
Arabidopsis thaliana homolog: AT1G12880.1
Automatic updates:
Name: NM_001254104 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max nudix hydrolase 12, mitochondrial-like (LOC100794003), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:34259460..34259953 (+ strand)
Length: 494
Type: five_prime_UTR
Position: Chr04:34259954..34260024 (+ strand)
Length: 71
Type: CDS
Position: Chr04:34261647..34261758 (+ strand)
Length: 112
Type: CDS
Position: Chr04:34261847..34261930 (+ strand)
Length: 84
Type: CDS
Position: Chr04:34262751..34262900 (+ strand)
Length: 150
Type: CDS
Position: Chr04:34263083..34263361 (+ strand)
Length: 279
Type: CDS
Position: Chr04:34263362..34263910 (+ strand)
Length: 549
Type: three_prime_UTR

>Vigan.04G232600.01 class=Sequence position=Chr04:34259460..34263910 (+ strand)
GAATACGAAG GTGAAGAGAT GGTTGCTATA TAAAAGGATG CCATTGCTGC ACCCCGTGAA AGCTCTATCA CTCTCTTTCC
CTATTTTCCG TGGAAGCCAT TCTGCTAAAA CAAGCATATT TTCTTCTAGA TTTCCATCTT TGCAAAAGGG ATAAAGGGTT
GCCACCATTT ATGGTTTGGT TCGGCTATTT GTAGTAACCT TGTGCTATGA AAACAAACAA AACCATTATC ATGAAAGGGT
TCTTGAAACT TTAACACCTG AACCTTCATC TAAACAATTG TTCAACCTAA ACACAGCACC TCGCCTATTA AGCCTCTCTC
ATGCAAGAGA TTCTTTGTGT TCAGGGTTGA GCCTCACCCG TTAACGTTTT CACGCTTTTT GTTTCATCTG TTCCATTTCA
ACCACCCCCA TATTCTAAAG TCACAACCTT GGTTTTGATT CCCCCCTGTT TTCCTTTGTC TGTTTCCACT GCTTTTTGTC
TTTTGCTAGA ACCTATGTCG TCTGTGCCAG CACGAACAGG GCGACAAAGA CAGCGTTATG AAGACAATTT GCGCCTTGTC
TCTGGGTAAG TTTTTCCATT TTCACGCCAT GGCTTCTTTA CTGTTCTTAG ATTTCATCTC AAAATCAATT GTCATTTCCT
GAGGGTACCT AACGTGTATT TAAAACTTAC CCCTTGTTTT CTAACACGTT TGTATGGAGA AAATCTTCTT GAGTCCTTCA
GATCCTTGAA GGATATTATC ACTCTTCTTT ACAACCATAT GCATATCAGA GAAAAAATGC ATCAAGTAAT TGTTGGAAAG
CTCCACATGC TTACCTCAAT TACTTGGATG TGGTTTAGGT GTTTGTTAAA AACCTTTACA GATCAAATCT AACATGGTAT
ATCTAATAAC CTTCAAAATC TCATCTTTTT CCCTTTTGTT CCTTATCACC CCTTTTGACT TGTATCGCTC GCTCCTTTTT
GTTATAGCCA TGCATTTTAT AGTACTTATT CAAAATATGG TTCCAATTCT GCATCTGTGT ATTTGATGGT AAAAATCTAT
CTTCTTTGTG ATTTACCTTT TCCTTCCTTT CTTCTCTGTT CTTGTCTAGT AAATAAAGGC ATGTTCAGTA GTAGAAATCT
AAATGATTTT TGCTTATGTA ATAGAGAAGA GGGGCATCTC AAAACTGTTG ATACATAATT GTCTTCTCTG TTTGATGTTA
AACTATTTTA TTATTTTCAT GCGGATGTGT TCATTGCAAT CATATATCAA AATAGTGGGC CATGACATTG ACTTAATGTC
TATATAATAA AATGCTTCAA ATTGCGTGAT CTATTTTGGC TTTTATCTCA ATATAATAAG AAGACAATCT CGAGAGTTAT
CGGTAACAAC ACTGTGGCTC ATGCAGAGTA GTTAACTGGG GTAGTGGTGG TGTTTATAAA ATTAATAAAA CCTTCCATGC
AAGTCATGGG AAACATGTTT CTGGTTGAAG GTTGGATTCA GCCTGCTATT AGTAGTTGCA GGGAAATTTC GGATCTATTC
CTTTTTATCA GGCTGGAATC ATTGATCCTC GTTTCAAGCA ATCAATGTAT CCAAGTGGCC ATAAAGTAAA CACAAAAATG
GATTAAACTA GGGAAAGCCA CTCTTCAAAT TTTTAAACCT TTTGGCTACA CAAAACAAAA ACAATGAATC GGTGGGACAA
TTTAATGTCC CACTTAGACA ATTTAACATT TTACTTTTAC TTTTCCTTTT ATCTTAACAT ATCTCATGGA TTCTATAAAA
TTTGGTATTG CAAAACTGAA TAAAAAAACA TGAAACCCAC TACAGTTTTT CTTTAACACC ATAATTATAT ATGCCCCAGA
AGAAGAACCT ATTTTCAAAA TCAAAGATCA CCTGTTGATA CTACAGATTT CTACCCAAAA GGAAATTTTA CTAAAAGGGT
AATAAACCCA GAGTGATTTG TGACAGCAGA ACAGTAAGAA CCTAGAAGTG CCACCAACCT TTGTTAATCT TAATTTTGGA
TTTCTGGATG TTGGTAATAT CGAACTGAGA TAAATATTCA GAGTTTATTT TGAACAGTAA CCATTGTTGC TACAGATATA
GATTATGAAT AGAGTTTTAA GGACTAGCAT CTAATGAGAA TTAGTAGTTA CAACAGAATC TTATCACCAA TGTGATTTTA
ATCAATTTTT CTTTTGCATT TTGATAGATG TATTCCCTAT AGATGGAGAA AGGACAACAC AGATCTAATG GGAGAAACTG
AGATAATGGA AGTACTAATG ATTTCTTCTC CAAAACGTGA TGACCTTGTA TTCCCAAAGG TACTTCATAT TGTTTGCACC
AATGATTAAT GAACTTTATT AACATGAAAC CCTTTATATT GAAAATTTGT ATTTCTTCTC TTGCTAGGGT GGATGGGAGG
ATGATGAGAC TGTCACAGAA GCTGCTTGCC GCGAAGCTTT AGAAGAAGCA GGAGTTAAAG GAATACTAAG AGTAGGTTCA
ATTATTCCCT CTTCGTTGTT GAAGTATTTA TTATAATCCA TCTTCATCGA GGAATGTTTA AAAATACCAA TCAGAATGAT
ATAACAAAGG GAAGAATCGA TGGTATTCAA TAATCTGTGT AGAAATGATG ATTGTGGTGA TATCATCCAA AAAATTTTAG
CTATGCCATA AATTTCTCAT TGCTTTCAGC TTCCATTTTG TAAGTTTTCT ATATCTTAAA GAAAACTTAA CCATCTACGG
AAGATATGAG ATATCACACC TCCCTTTAAG CTCAAACAAT GATGCAAAGC TGTTAGTTTT CAGATATTCT CAAAACAAAC
ATTTATTTGT TTTGCTTGCA TGGAAACTCT TCACTTATAC TGTGATTGAT TCCATGAATA TAAATTTGCT TCAGCATGAT
GGATAAAAGA TTTACCATTT CATATTGTCT AGCTGGAGTA AATTTTGGTC CTGGACTTGT TGAAATACTC ATCTCTGGTA
GTTTCATTAT AGTCACCCGG TTATGGCCCA AACTAGTAAT GGAATAATCT AAGTTCCCCT GAATCACTCT TCTTGCAGTT
TAAAAAATAT AGGATAAAGA TTATACTTCT ACTGTTCTAC ATAAACATCA CAAGCCATCT ATGAAACTTG CTTCCATATC
ATGAAGCATT GACTGCAAAC ATAACTGGTT GAAAATCAAG TTAATGGTCC ATTACGTGTA CTTCATTTTC TTTTGCTTAC
TGAAAAATAA CTGATTGAAC GTGGTAATGA TTCTTCCATG TAACAATTAG GATAATGATG AGATCATGCT GATTCTTGCA
TTCATTTTCA GGAAATTCCA TTAGGAATAT GGGAGTTCAG AAGCAAAAGC AGTCAAGACT TGTGTAGCAT TGAAGGAGGC
TGCAGAGGAT ACATGTTTGC CTTGGAGGTG ACTGAAGAAC TTGAGCATTG GCCAGAGCAG AAAAATCGTT CTCGCCAATG
GGTAAGCCTT ACGATAAGTT CTTAAAGAAT TATACACCCT TAGGAGAAGT TCATAATTAA AGTTTCAAAT CGTTAAAAGT
GCTGCAATTA ATAAACCTTC ACAAACACAT TGCAACTATT TGTATTTTTT GACATCACAT GAAGCATGAA TACTGAATAA
AAGTTCATAT TTTGTGTTCC TAGTTAAACA TAAAAGAGGC ATTCAGACTC AGCAGATATG ACTGGATGTG TAATGCACTT
GAGGCATTTT TGAGAGTCAT GGAAGAGGAG AGAAAGCTTG ATGATGAGAA GCAAGAGCAG AATACTGAAC TTGAACAACC
TTCAATTATG GTAGCAGATG TGTCAGAATG CCAAACTATG TCACCTAACT GCTATAAAAG ATCCTCTACC ATGCACATGC
CTCCTTCGGT CAATCTTCTG TCACGTGCTA CTCAAGAGAT AGCCATCCAC TTTGGTTATT GACATCACCA TGACACTTCT
GTAAAATGTT CATGTGTTAG ATCAACATAG TGCGGTAACT CCTTCAAATT GTGAAAGAAC ATGTTGTGAA GTTGTGACTT
GGATGCACAT GCCATCATCG ACCTCGTTGC TGTCGGGTTT TTCTTCTTTC TGTCCGATGT GATCGTGATG TAAAAATGTG
GTGGTGCAAG TCTCAAGTGT ATATGGACTT GGCAGTTGTT TGATTCACCC CACTGAAACT GAAGGCTTGT AAAAAAGCAT
CATTTGTGAA AACTAGTAGA GTACAAGGGA CAAAGACTAT GCTGCTTTTG ACAACCTTCG ATTCATAACC TTATAACACG
TCACTTTTCA GACAGTACCC TTGATTTCGT TCTTAAAATT CTGTTCGGCA TGTGCACTAT CCTTGGTTAC CTGTTTCAGT
GGCTGTGTTT TCTGTGAAGT TCAATGTTTC TCTTACCCAT GAAACCGTGC CTTTTGCTCT TTTGATAAAT TTTTCAGGAT
ATTAAAACTT GATATCATGA TGAAGAACAA AAAGACCTTT TTTTATTTAA A

>Vigan.04G232600.01
GAATACGAAG GTGAAGAGAT GGTTGCTATA TAAAAGGATG CCATTGCTGC ACCCCGTGAA AGCTCTATCA CTCTCTTTCC
CTATTTTCCG TGGAAGCCAT TCTGCTAAAA CAAGCATATT TTCTTCTAGA TTTCCATCTT TGCAAAAGGG ATAAAGGGTT
GCCACCATTT ATGGTTTGGT TCGGCTATTT GTAGTAACCT TGTGCTATGA AAACAAACAA AACCATTATC ATGAAAGGGT
TCTTGAAACT TTAACACCTG AACCTTCATC TAAACAATTG TTCAACCTAA ACACAGCACC TCGCCTATTA AGCCTCTCTC
ATGCAAGAGA TTCTTTGTGT TCAGGGTTGA GCCTCACCCG TTAACGTTTT CACGCTTTTT GTTTCATCTG TTCCATTTCA
ACCACCCCCA TATTCTAAAG TCACAACCTT GGTTTTGATT CCCCCCTGTT TTCCTTTGTC TGTTTCCACT GCTTTTTGTC
TTTTGCTAGA ACCTATGTCG TCTGTGCCAG CACGAACAGG GCGACAAAGA CAGCGTTATG AAGACAATTT GCGCCTTGTC
TCTGGATGTA TTCCCTATAG ATGGAGAAAG GACAACACAG ATCTAATGGG AGAAACTGAG ATAATGGAAG TACTAATGAT
TTCTTCTCCA AAACGTGATG ACCTTGTATT CCCAAAGGGT GGATGGGAGG ATGATGAGAC TGTCACAGAA GCTGCTTGCC
GCGAAGCTTT AGAAGAAGCA GGAGTTAAAG GAATACTAAG AGAAATTCCA TTAGGAATAT GGGAGTTCAG AAGCAAAAGC
AGTCAAGACT TGTGTAGCAT TGAAGGAGGC TGCAGAGGAT ACATGTTTGC CTTGGAGGTG ACTGAAGAAC TTGAGCATTG
GCCAGAGCAG AAAAATCGTT CTCGCCAATG GTTAAACATA AAAGAGGCAT TCAGACTCAG CAGATATGAC TGGATGTGTA
ATGCACTTGA GGCATTTTTG AGAGTCATGG AAGAGGAGAG AAAGCTTGAT GATGAGAAGC AAGAGCAGAA TACTGAACTT
GAACAACCTT CAATTATGGT AGCAGATGTG TCAGAATGCC AAACTATGTC ACCTAACTGC TATAAAAGAT CCTCTACCAT
GCACATGCCT CCTTCGGTCA ATCTTCTGTC ACGTGCTACT CAAGAGATAG CCATCCACTT TGGTTATTGA CATCACCATG
ACACTTCTGT AAAATGTTCA TGTGTTAGAT CAACATAGTG CGGTAACTCC TTCAAATTGT GAAAGAACAT GTTGTGAAGT
TGTGACTTGG ATGCACATGC CATCATCGAC CTCGTTGCTG TCGGGTTTTT CTTCTTTCTG TCCGATGTGA TCGTGATGTA
AAAATGTGGT GGTGCAAGTC TCAAGTGTAT ATGGACTTGG CAGTTGTTTG ATTCACCCCA CTGAAACTGA AGGCTTGTAA
AAAAGCATCA TTTGTGAAAA CTAGTAGAGT ACAAGGGACA AAGACTATGC TGCTTTTGAC AACCTTCGAT TCATAACCTT
ATAACACGTC ACTTTTCAGA CAGTACCCTT GATTTCGTTC TTAAAATTCT GTTCGGCATG TGCACTATCC TTGGTTACCT
GTTTCAGTGG CTGTGTTTTC TGTGAAGTTC AATGTTTCTC TTACCCATGA AACCGTGCCT TTTGCTCTTT TGATAAATTT
TTCAGGATAT TAAAACTTGA TATCATGATG AAGAACAAAA AGACCTTTTT TTATTTAAA

>Vigan.04G232600.01
ATGTCGTCTG TGCCAGCACG AACAGGGCGA CAAAGACAGC GTTATGAAGA CAATTTGCGC CTTGTCTCTG GATGTATTCC
CTATAGATGG AGAAAGGACA ACACAGATCT AATGGGAGAA ACTGAGATAA TGGAAGTACT AATGATTTCT TCTCCAAAAC
GTGATGACCT TGTATTCCCA AAGGGTGGAT GGGAGGATGA TGAGACTGTC ACAGAAGCTG CTTGCCGCGA AGCTTTAGAA
GAAGCAGGAG TTAAAGGAAT ACTAAGAGAA ATTCCATTAG GAATATGGGA GTTCAGAAGC AAAAGCAGTC AAGACTTGTG
TAGCATTGAA GGAGGCTGCA GAGGATACAT GTTTGCCTTG GAGGTGACTG AAGAACTTGA GCATTGGCCA GAGCAGAAAA
ATCGTTCTCG CCAATGGTTA AACATAAAAG AGGCATTCAG ACTCAGCAGA TATGACTGGA TGTGTAATGC ACTTGAGGCA
TTTTTGAGAG TCATGGAAGA GGAGAGAAAG CTTGATGATG AGAAGCAAGA GCAGAATACT GAACTTGAAC AACCTTCAAT
TATGGTAGCA GATGTGTCAG AATGCCAAAC TATGTCACCT AACTGCTATA AAAGATCCTC TACCATGCAC ATGCCTCCTT
CGGTCAATCT TCTGTCACGT GCTACTCAAG AGATAGCCAT CCACTTTGGT TATTGA

>Vigan.04G232600.01
MSSVPARTGR QRQRYEDNLR LVSGCIPYRW RKDNTDLMGE TEIMEVLMIS SPKRDDLVFP KGGWEDDETV TEAACREALE
EAGVKGILRE IPLGIWEFRS KSSQDLCSIE GGCRGYMFAL EVTEELEHWP EQKNRSRQWL NIKEAFRLSR YDWMCNALEA
FLRVMEEERK LDDEKQEQNT ELEQPSIMVA DVSECQTMSP NCYKRSSTMH MPPSVNLLSR ATQEIAIHFG Y*