GBrowse Details

Vigan.04G232000.01

Basic Information:
Name: Vigan.04G232000.01
Multiple alignment
Variant Information
Position: Chr04:34130532..34132708 (- strand)
Length: 2177
Functional Information:
Description: Similar to Uncharacterized protein. [I1N828, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Biological Process: biosynthetic process (GO:0009058)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: transferase activity, transferring acyl groups (GO:0016746)
Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747)
InterPro: Chalcone/stilbene synthase, N-terminal (IPR001099)
Polyketide synthase, type III (IPR011141)
Chalcone/stilbene synthase, C-terminal (IPR012328)
Thiolase-like, subgroup (IPR016038)
Thiolase-like (IPR016039)
Chalcone/stilbene synthase, active site (IPR018088)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.39,57.13,116.53,171.56,7.73,485.52,1.68,106.38
Arabidopsis thaliana homolog: AT5G13930.1
Automatic updates:
Name: NM_001371383 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chalcone synthase 13 (CHS13), mRNA.
PubMed ID: 30509179 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:34130532..34130980 (- strand)
Length: 449
Type: three_prime_UTR
Position: Chr04:34130981..34131978 (- strand)
Length: 998
Type: CDS
Position: Chr04:34132450..34132627 (- strand)
Length: 178
Type: CDS
Position: Chr04:34132628..34132708 (- strand)
Length: 81
Type: five_prime_UTR

>Vigan.04G232000.01 class=Sequence position=Chr04:34130532..34132708 (- strand)
CCTCACTCAC CTTTCATCTC TCTCACTCAC TCTCTTCTAA CCGCTTTCTC TCCTTTACCT CTGCCATTCA CGCACCTCCA
GATGGTCACA GTCGAGGAAA TCCGCAACTC CCAGCGCTCC CATGGCCCCG CCACCATTCT CGCCTTCGGC ACCGCCACGC
CCTCCAACTG CGTCTCCCAA GAGGATTACC CCGACTACTA CTTCCGCATT ACTAACAGCG AACACATGAC CGACCTCAAG
GAAAAGTTCA AGCGCATGTG TACGTACTCT CAACTCCTTT TATGCTTTCT TCATCTCACT CACTTTTTTA ATTCGTTCAG
ATTTGGAATG TTTTTCTTTG TGTACAGTTT TATATTTTTA ATCAGTTATG AAACTAATTT TCTGTCTGAA TTTTAGGTCC
ATTTAAAGCT TACTTTCAGT GTTAGGTGAA ACTTGACCTA CCTTTGGTAA ACTGGAGTTC ATGGAAGTTT TAATTATGAT
AATAAGAGAA AAGAAAAGAG GTTTAGCTTT TCGGTTATAC TCCTCAACAG TTTTTTTTTA GTAGTTCTAG TTTCTTAATT
AGTTTCTTTA AGCAAGATGA GAAAAATCAT TTATTAGTGT ACCGGTGGTA TTCAAAGAAT TTGTGGGCAA GGTGTCGTTG
AAACTGTGTC AAAACAAAAA AGGTTATTTT TGTGGCTGAT GTGATTACTT TTTGAAGTAA AAAGTGAGGG AAGTGATTTC
AATTGTACAG GTGAAAAGTC GATGATAAAG AAGCGTTACA TGCACCTGAC GGAGGAGTTT CTGAAGGAGA ATCCAAACAT
GTGTGCGTAC ATGGCGCCGT CGCTTGACGT GAGGCAGGAC ATAGTGGTCG TGGAAGTGCC GAAGCTCGGA AAAGAAGCGG
CGAGGAAGGC GATAAAGGAG TGGGGTCAAC CCAAATCAAA GATCACGCAC CTGGTGTTTT GCACCACTTC AGGCGTCGAC
ATGCCTGGAG CGGATTACCA GCTCACCAAG CTTCTCGGCC TCAGGCCTTC CGTGAAGCGT CTCATGATGT ACCAGCAGGG
CTGCTTCGCC GGCGGCACCG TGCTCCGTCT CGCCAAGGAC CTCGCCGAGA ACAACAAGGG CGCCCGCGTC CTCGTAGTCT
GCTCCGAAAT CACGGCCGTG ACTTTCCGCG GCCCGTCCGA TGCCCACCTC GACTCCCTCG TCGGCCAGGC TCTATTCGGG
GACGGCGCGG CCGCGATGAT CATCGGAGCG GATCCTGACA GAACTGTAGA ACGTCCGATA TTTGAAATGG TATCGGCCTC
CCAGACCATT CTGCCGGACT CTGACGGTGC CATCGACGGG CACTTGAGGG AGGTGGGACT AACATTTCAC CTCCTGAAAG
ACGTGCCCGG AATCATCTCG AAGAACATTG AGAAGAGTCT GACGGAGGCG TTTGCGCCGA TTGGGATTAA TGACTGGAAC
TCGATCTTTT GGATTGCACA TCCGGGTGGA CCGGCGATTC TGGACCAGGT GGAGGAGAAG CTCCGGCTGA AACCGGAGAA
ACTCCGGTCC ACTCGGCACG TTCTGAGCGA ATATGGAAAC ATGTCAAGTG CATGTGTTTT GTTCATTCTG GATGAAATGA
GGAAGAAGTC GAAGGAGGAA GGGAAGGGTA GCACCGGAGA AGGGCTAGAG TGGGGGGTTT TATTCGGGTT CGGACCGGGT
CTAACCGTTG AGACGGTTGT GCTGCACAGC GTTCCGTTGG AGGGGTGAGT GAACGTGATG GTGATGATAT GAGTGGGTCA
TACTATGGAA AACTAGTATA TCACTGTATA ATAACTACTA ATAAGGAAAG ACCTCCAGAA TCTGAGGAAA AGTGTGATTA
TGTTAATTAG TGTCAAATTT GATTAAGAAT TGATGTTAGC ATAAAGCATA TTAGTGGAAA GATGATGGTG TCTGTGATTG
AACTTGTGAA AGTTTTAGTG CTTAATGCCA TTGAATTTGG TTTTGGTGCT TTTACTCTTA AAATGATCCA TGGTGTTAGT
AATGTAGCAC CAGGTCCTTG GCTCTTTCGT CTTCTCATGT GAACCAATCA TCAAACTACA ATTATTTAAG GTTATAATTG
GACAACAAAA GCAAACATCT TTTCTCTATA CAGCTATTTT ATAACTTTTT TTATTCAATA GTTTAGTCTA TATTTTCATT
AAATATCTAG TTATACA

>Vigan.04G232000.01
CCTCACTCAC CTTTCATCTC TCTCACTCAC TCTCTTCTAA CCGCTTTCTC TCCTTTACCT CTGCCATTCA CGCACCTCCA
GATGGTCACA GTCGAGGAAA TCCGCAACTC CCAGCGCTCC CATGGCCCCG CCACCATTCT CGCCTTCGGC ACCGCCACGC
CCTCCAACTG CGTCTCCCAA GAGGATTACC CCGACTACTA CTTCCGCATT ACTAACAGCG AACACATGAC CGACCTCAAG
GAAAAGTTCA AGCGCATGTG TGAAAAGTCG ATGATAAAGA AGCGTTACAT GCACCTGACG GAGGAGTTTC TGAAGGAGAA
TCCAAACATG TGTGCGTACA TGGCGCCGTC GCTTGACGTG AGGCAGGACA TAGTGGTCGT GGAAGTGCCG AAGCTCGGAA
AAGAAGCGGC GAGGAAGGCG ATAAAGGAGT GGGGTCAACC CAAATCAAAG ATCACGCACC TGGTGTTTTG CACCACTTCA
GGCGTCGACA TGCCTGGAGC GGATTACCAG CTCACCAAGC TTCTCGGCCT CAGGCCTTCC GTGAAGCGTC TCATGATGTA
CCAGCAGGGC TGCTTCGCCG GCGGCACCGT GCTCCGTCTC GCCAAGGACC TCGCCGAGAA CAACAAGGGC GCCCGCGTCC
TCGTAGTCTG CTCCGAAATC ACGGCCGTGA CTTTCCGCGG CCCGTCCGAT GCCCACCTCG ACTCCCTCGT CGGCCAGGCT
CTATTCGGGG ACGGCGCGGC CGCGATGATC ATCGGAGCGG ATCCTGACAG AACTGTAGAA CGTCCGATAT TTGAAATGGT
ATCGGCCTCC CAGACCATTC TGCCGGACTC TGACGGTGCC ATCGACGGGC ACTTGAGGGA GGTGGGACTA ACATTTCACC
TCCTGAAAGA CGTGCCCGGA ATCATCTCGA AGAACATTGA GAAGAGTCTG ACGGAGGCGT TTGCGCCGAT TGGGATTAAT
GACTGGAACT CGATCTTTTG GATTGCACAT CCGGGTGGAC CGGCGATTCT GGACCAGGTG GAGGAGAAGC TCCGGCTGAA
ACCGGAGAAA CTCCGGTCCA CTCGGCACGT TCTGAGCGAA TATGGAAACA TGTCAAGTGC ATGTGTTTTG TTCATTCTGG
ATGAAATGAG GAAGAAGTCG AAGGAGGAAG GGAAGGGTAG CACCGGAGAA GGGCTAGAGT GGGGGGTTTT ATTCGGGTTC
GGACCGGGTC TAACCGTTGA GACGGTTGTG CTGCACAGCG TTCCGTTGGA GGGGTGAGTG AACGTGATGG TGATGATATG
AGTGGGTCAT ACTATGGAAA ACTAGTATAT CACTGTATAA TAACTACTAA TAAGGAAAGA CCTCCAGAAT CTGAGGAAAA
GTGTGATTAT GTTAATTAGT GTCAAATTTG ATTAAGAATT GATGTTAGCA TAAAGCATAT TAGTGGAAAG ATGATGGTGT
CTGTGATTGA ACTTGTGAAA GTTTTAGTGC TTAATGCCAT TGAATTTGGT TTTGGTGCTT TTACTCTTAA AATGATCCAT
GGTGTTAGTA ATGTAGCACC AGGTCCTTGG CTCTTTCGTC TTCTCATGTG AACCAATCAT CAAACTACAA TTATTTAAGG
TTATAATTGG ACAACAAAAG CAAACATCTT TTCTCTATAC AGCTATTTTA TAACTTTTTT TATTCAATAG TTTAGTCTAT
ATTTTCATTA AATATCTAGT TATACA

>Vigan.04G232000.01
ATGGTCACAG TCGAGGAAAT CCGCAACTCC CAGCGCTCCC ATGGCCCCGC CACCATTCTC GCCTTCGGCA CCGCCACGCC
CTCCAACTGC GTCTCCCAAG AGGATTACCC CGACTACTAC TTCCGCATTA CTAACAGCGA ACACATGACC GACCTCAAGG
AAAAGTTCAA GCGCATGTGT GAAAAGTCGA TGATAAAGAA GCGTTACATG CACCTGACGG AGGAGTTTCT GAAGGAGAAT
CCAAACATGT GTGCGTACAT GGCGCCGTCG CTTGACGTGA GGCAGGACAT AGTGGTCGTG GAAGTGCCGA AGCTCGGAAA
AGAAGCGGCG AGGAAGGCGA TAAAGGAGTG GGGTCAACCC AAATCAAAGA TCACGCACCT GGTGTTTTGC ACCACTTCAG
GCGTCGACAT GCCTGGAGCG GATTACCAGC TCACCAAGCT TCTCGGCCTC AGGCCTTCCG TGAAGCGTCT CATGATGTAC
CAGCAGGGCT GCTTCGCCGG CGGCACCGTG CTCCGTCTCG CCAAGGACCT CGCCGAGAAC AACAAGGGCG CCCGCGTCCT
CGTAGTCTGC TCCGAAATCA CGGCCGTGAC TTTCCGCGGC CCGTCCGATG CCCACCTCGA CTCCCTCGTC GGCCAGGCTC
TATTCGGGGA CGGCGCGGCC GCGATGATCA TCGGAGCGGA TCCTGACAGA ACTGTAGAAC GTCCGATATT TGAAATGGTA
TCGGCCTCCC AGACCATTCT GCCGGACTCT GACGGTGCCA TCGACGGGCA CTTGAGGGAG GTGGGACTAA CATTTCACCT
CCTGAAAGAC GTGCCCGGAA TCATCTCGAA GAACATTGAG AAGAGTCTGA CGGAGGCGTT TGCGCCGATT GGGATTAATG
ACTGGAACTC GATCTTTTGG ATTGCACATC CGGGTGGACC GGCGATTCTG GACCAGGTGG AGGAGAAGCT CCGGCTGAAA
CCGGAGAAAC TCCGGTCCAC TCGGCACGTT CTGAGCGAAT ATGGAAACAT GTCAAGTGCA TGTGTTTTGT TCATTCTGGA
TGAAATGAGG AAGAAGTCGA AGGAGGAAGG GAAGGGTAGC ACCGGAGAAG GGCTAGAGTG GGGGGTTTTA TTCGGGTTCG
GACCGGGTCT AACCGTTGAG ACGGTTGTGC TGCACAGCGT TCCGTTGGAG GGGTGA

>Vigan.04G232000.01
MVTVEEIRNS QRSHGPATIL AFGTATPSNC VSQEDYPDYY FRITNSEHMT DLKEKFKRMC EKSMIKKRYM HLTEEFLKEN
PNMCAYMAPS LDVRQDIVVV EVPKLGKEAA RKAIKEWGQP KSKITHLVFC TTSGVDMPGA DYQLTKLLGL RPSVKRLMMY
QQGCFAGGTV LRLAKDLAEN NKGARVLVVC SEITAVTFRG PSDAHLDSLV GQALFGDGAA AMIIGADPDR TVERPIFEMV
SASQTILPDS DGAIDGHLRE VGLTFHLLKD VPGIISKNIE KSLTEAFAPI GINDWNSIFW IAHPGGPAIL DQVEEKLRLK
PEKLRSTRHV LSEYGNMSSA CVLFILDEMR KKSKEEGKGS TGEGLEWGVL FGFGPGLTVE TVVLHSVPLE G*