GBrowse Details

Vigan.04G222400.01

Basic Information:
Name: Vigan.04G222400.01
Multiple alignment
Variant Information
Position: Chr04:32453930..32455696 (+ strand)
Length: 1767
Functional Information:
Description: Similar to Uncharacterized protein. [I1MLE9, Glycine max]
InterPro: Pollen Ole e 1 allergen/extensin (IPR006041)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.04,0.00,11.75,5.24,69.82,41.94,4.43,4.73
Arabidopsis thaliana homolog: AT3G26960.1
Automatic updates:
Name: NM_001248901 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500029 (LOC100500029), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:32453930..32454310 (+ strand)
Length: 381
Type: five_prime_UTR
Position: Chr04:32454311..32454494 (+ strand)
Length: 184
Type: CDS
Position: Chr04:32454850..32455187 (+ strand)
Length: 338
Type: CDS
Position: Chr04:32455188..32455696 (+ strand)
Length: 509
Type: three_prime_UTR

>Vigan.04G222400.01 class=Sequence position=Chr04:32453930..32455696 (+ strand)
TTTTTATGTG CCTGTGGTGG CATTTTCCCG AGTGGTATAT CTCTATTTAA ACCAAACCCC ATTTCTCAAC ATCCCCAATA
GAAGCTATCT TGTTCTTCTC CAACAAAAGA ATCTACCACC ACTTCTCTCT CCTACTCATG AACTCCATGT CTTGCCAAAC
AACATTCACA TGTCTTTGTT TCTTGTGAAA AAAAGATAAA ATTACTTTCA ACCTTTTGCT TGGAGTTGGT TCTCCACTAA
CCACTGCTCC TCTTTATCCA CACCCCTACT ACCAGCAAAA TGCTAATGCT CTGAAAGAAA AACATAGTTC TAGCTGCTGC
TGCTGCTCAT CATAAAGACC ACATTCGGAC GCTTCCTCCA TTTTCTTTTC CAAACTTGGC CATGAATCCC ACAACCCTCT
TGCTCCTTTT GCCCTTGTTC ACTCAGTTTT TGGAAGTTGA GCCTGCAAAA CCCAAGCTTC CAGGGAAAAC CAGGTTCCCC
ATCTCACAAA TCAGTGTGAT GGGCTTTGTA TATTGCGATT TCTGCTCCAA TAACAGCTTT TCCGGACACA GCTACTTTTT
GCCAGGTGAT AACTCTCAAT AAACCTCTAG TAGAAATGCT TTGTGGTGTT GTAAGTTGGA ATGTAACTTT GGTAGAAACA
TGGAGCTGCA TATGAACGAT TTCAATGTAC GAAATGGTTA GTTTCTTGCA ATGTGGTAAA TTATGGCTTG AATCTTTCCC
AAAAGAGCTG TTTATATACT GTTTAGTGTC TCCATACGAT GGATTCTCTC TAAAAGATGA AACATGTAGG AGGAACTCAA
AAAGAAAGAA ACAATTGTTT TCTTTTTGTC TTGAGAAAAC AATTACTCTC CCAAAAACAA AAGGAGTTCA AATGGGGATG
CATCTTACAC TCTTTTTTCT TCATATTTAT GTCCATGCAG GTGCTGAGGT GAAAGTAGAT TGCATGTTCA AAGCACTCTC
AGAGAAAACT GCTGAACAGA TTTCACTTTC AGTGAACAGA ACTACCAACA AGTTTGGGAT GTACAAGCTG GAAATTCCTT
CAGTTGATGG TGTGAAATGT GCAGAAGATT CTGTAGTTGT GTCTTCATGC CAAGCAAGCT TAATAGGTAG TTCATCCTCT
GCTTGCAATG TTCCTGGCTA CAGAACCACT TCTAATGTGA TTGCAATCAA AGCAAGAAAA GCTAACCTCT GCATATACAG
CTTCAATGCT TTGACTTTCA GACCATCCAA GAGGGACATC ACCCTCTGTG GTAATTAAAA GAAGAAGCTT ACACAAGTAG
GCCTAGAGCT TGGTCACTTG TGTATACATA CAAATTTCAA GAAAATAAAT GAAAAAAAAA AAAAAAAAAC TCATATGTTC
TCTTTTTGAA GCCCATTATG GGCACAGATC TCTTGTCTCT CTCTCTTCAT TGTTTTACTG CATTATTTGT TTGGTAATAC
TGTTTTCATA TTATGCTACG TTAGAGAAAG TATCATGGAA GTAGAGTTTG GGTGTGAGAG ATAGTTCCTT TTTGATTTAT
GCAGTTGATT AGGTTTTGTT AAAATGTACT GGTAGATGTA TATTGTACAG AGCATGCAAG TTGTTAAAGA AGGAACACAT
GAATAAACAA GTTATTGTTG TGCATATTAT ATTTCCCATA TGGATAAACA CTTTGGCAAA AGAGAAGGGA GAAGGAGCAT
ATATATCAAA ATAAATGGGA GAAATCTTCA GTTCAGGATC AATTTCTAAG GAGTAAATAT ACAACTTTCT TTTCTGAAAA
AAAGTGA

>Vigan.04G222400.01
TTTTTATGTG CCTGTGGTGG CATTTTCCCG AGTGGTATAT CTCTATTTAA ACCAAACCCC ATTTCTCAAC ATCCCCAATA
GAAGCTATCT TGTTCTTCTC CAACAAAAGA ATCTACCACC ACTTCTCTCT CCTACTCATG AACTCCATGT CTTGCCAAAC
AACATTCACA TGTCTTTGTT TCTTGTGAAA AAAAGATAAA ATTACTTTCA ACCTTTTGCT TGGAGTTGGT TCTCCACTAA
CCACTGCTCC TCTTTATCCA CACCCCTACT ACCAGCAAAA TGCTAATGCT CTGAAAGAAA AACATAGTTC TAGCTGCTGC
TGCTGCTCAT CATAAAGACC ACATTCGGAC GCTTCCTCCA TTTTCTTTTC CAAACTTGGC CATGAATCCC ACAACCCTCT
TGCTCCTTTT GCCCTTGTTC ACTCAGTTTT TGGAAGTTGA GCCTGCAAAA CCCAAGCTTC CAGGGAAAAC CAGGTTCCCC
ATCTCACAAA TCAGTGTGAT GGGCTTTGTA TATTGCGATT TCTGCTCCAA TAACAGCTTT TCCGGACACA GCTACTTTTT
GCCAGGTGCT GAGGTGAAAG TAGATTGCAT GTTCAAAGCA CTCTCAGAGA AAACTGCTGA ACAGATTTCA CTTTCAGTGA
ACAGAACTAC CAACAAGTTT GGGATGTACA AGCTGGAAAT TCCTTCAGTT GATGGTGTGA AATGTGCAGA AGATTCTGTA
GTTGTGTCTT CATGCCAAGC AAGCTTAATA GGTAGTTCAT CCTCTGCTTG CAATGTTCCT GGCTACAGAA CCACTTCTAA
TGTGATTGCA ATCAAAGCAA GAAAAGCTAA CCTCTGCATA TACAGCTTCA ATGCTTTGAC TTTCAGACCA TCCAAGAGGG
ACATCACCCT CTGTGGTAAT TAAAAGAAGA AGCTTACACA AGTAGGCCTA GAGCTTGGTC ACTTGTGTAT ACATACAAAT
TTCAAGAAAA TAAATGAAAA AAAAAAAAAA AAAACTCATA TGTTCTCTTT TTGAAGCCCA TTATGGGCAC AGATCTCTTG
TCTCTCTCTC TTCATTGTTT TACTGCATTA TTTGTTTGGT AATACTGTTT TCATATTATG CTACGTTAGA GAAAGTATCA
TGGAAGTAGA GTTTGGGTGT GAGAGATAGT TCCTTTTTGA TTTATGCAGT TGATTAGGTT TTGTTAAAAT GTACTGGTAG
ATGTATATTG TACAGAGCAT GCAAGTTGTT AAAGAAGGAA CACATGAATA AACAAGTTAT TGTTGTGCAT ATTATATTTC
CCATATGGAT AAACACTTTG GCAAAAGAGA AGGGAGAAGG AGCATATATA TCAAAATAAA TGGGAGAAAT CTTCAGTTCA
GGATCAATTT CTAAGGAGTA AATATACAAC TTTCTTTTCT GAAAAAAAGT GA

>Vigan.04G222400.01
ATGAATCCCA CAACCCTCTT GCTCCTTTTG CCCTTGTTCA CTCAGTTTTT GGAAGTTGAG CCTGCAAAAC CCAAGCTTCC
AGGGAAAACC AGGTTCCCCA TCTCACAAAT CAGTGTGATG GGCTTTGTAT ATTGCGATTT CTGCTCCAAT AACAGCTTTT
CCGGACACAG CTACTTTTTG CCAGGTGCTG AGGTGAAAGT AGATTGCATG TTCAAAGCAC TCTCAGAGAA AACTGCTGAA
CAGATTTCAC TTTCAGTGAA CAGAACTACC AACAAGTTTG GGATGTACAA GCTGGAAATT CCTTCAGTTG ATGGTGTGAA
ATGTGCAGAA GATTCTGTAG TTGTGTCTTC ATGCCAAGCA AGCTTAATAG GTAGTTCATC CTCTGCTTGC AATGTTCCTG
GCTACAGAAC CACTTCTAAT GTGATTGCAA TCAAAGCAAG AAAAGCTAAC CTCTGCATAT ACAGCTTCAA TGCTTTGACT
TTCAGACCAT CCAAGAGGGA CATCACCCTC TGTGGTAATT AA

>Vigan.04G222400.01
MNPTTLLLLL PLFTQFLEVE PAKPKLPGKT RFPISQISVM GFVYCDFCSN NSFSGHSYFL PGAEVKVDCM FKALSEKTAE
QISLSVNRTT NKFGMYKLEI PSVDGVKCAE DSVVVSSCQA SLIGSSSSAC NVPGYRTTSN VIAIKARKAN LCIYSFNALT
FRPSKRDITL CGN*