GBrowse Details

Vigan.04G218500.01

Basic Information:
Name: Vigan.04G218500.01
Multiple alignment
Variant Information
Position: Chr04:32039845..32042211 (+ strand)
Length: 2367
Functional Information:
Description: Similar to Uncharacterized protein. [I1MLC2, Glycine max]
InterPro: GRAM domain (IPR004182)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:391.56,74.01,3.27,1.23,1.66,2.25,2.12,4.16
Arabidopsis thaliana homolog: AT5G13200.1
Automatic updates:
Name: NM_001255711 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GEm-Related 5-like protein (LOC100811963), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:32039845..32040083 (+ strand)
Length: 239
Type: five_prime_UTR
Position: Chr04:32040084..32040435 (+ strand)
Length: 352
Type: CDS
Position: Chr04:32040719..32040993 (+ strand)
Length: 275
Type: CDS
Position: Chr04:32041292..32041525 (+ strand)
Length: 234
Type: CDS
Position: Chr04:32041526..32042211 (+ strand)
Length: 686
Type: three_prime_UTR

>Vigan.04G218500.01 class=Sequence position=Chr04:32039845..32042211 (+ strand)
AGTTGGTCCA CGTATGTTCA CTTTGATTAA CATCTTAGTT ACTAAGCTTT CTTTTTCCCA CGGTTTCGAT GGCGGTGTAG
GACTACTATC TTTCTCGAAA GCGTAAGCGC GTAAAACTTT CCTTCCAAAC TCAACTACTA ATATGATACC TCCTATGTAT
GTATCATTCT GAACCAACCC AAACACCTCA TTTCCCAAAA ACTCAATTCC ATTGATCTTT CTCTTGCACA TAAAACAACA
TGAACACCAA CAGCGAAAAC ACCACCCAGA AGAACCAGCC GGTTCCAGAA GCACAAGGTG TGGCATCATC TTCATCGTCT
TCTCCGCCCA GCGTTAGCAC CGAGAATTGG GGAACTCACA TCATGGGCAC CCCAGCTGTT CCCAGCAGCC ACCCAGATAA
CAAAAAAGCA GCTTTACAGA GCGGTGGTTC CGGCGGACAA CCTCTGCCAG TTCAATACTA CCAACAACAT CCGTACGTCC
AACACAGCCC TGTGGACAAA CCCAGCAACA GTCCCATGGA GTCCATCCTT CACATGTTCG ATACGTGGAG CAAAAAGGCT
GAAGCAACTG CCCACAACGT CTGGCACAAC CGTGAGTTTT TCAACCTCTA TATTAATTAA TTCAAACATA GGGAATCTTT
TGCTTTTAGT AATGTTTTTA TCTTTTTGTT AGTGAAAAAT CTATTATAGA TTTTGTCTCT AGAAGACTTT CATTCCTTTA
GTAATGAGAA CATCTCAAAA TCCTACTAAA CTGTAAAAAG TTATAAAGTA CACCTTGTAT GAACTTTTCA TTGTGATTCA
TAGATCCAAA TTAATCTCTC GTTGGTTTTT TTTTTCATTT GATGTGATTG TTAGTCTGCT ACTGTTACTT GCAGTTAGAA
CTGGTCCATC AGTGTCTTCA GCTGCACTGG GGAAGATGAA TCTGACTGTG AAAGCAATAT CAGAGGGTGG ATTTGAGTCC
CTTTACAAGC AAACATTCTC AACCTATCAA AATGAGAAGC TCAAGAAGAG CTTTGCTTGT TATCTTTCAA CTTCAACAGG
TCCTGTTGCA GGAACCCTTT ACCTGTCCAA TATTCATGTA GCCTTTTGCA GTGATCGCCC ATTGTCTTTC ACCGCACCCT
CTGGCCAGGA AACTTGGACC TACTACAAGG TACTTATTTT AATCAAAATA CTTTATCAAA GATTTGTTCA TCTTTGCAGA
GAGAAAGAGG GAGAGAGTAA ACTACATGAA GGTTATTATG TGTTTTAGTT CTCTCAAGAT TTGATCAACA CTGGTTTTGA
TTCCTTCAAG ACTTAATTAA AATTTGATTC AGTTAAACTT TAAAAATGAT AGTTTTACTC TTCATAATTC TAAAATGTGG
TAAATGTTAT CTCTGGTGGA ATACTTCATG TTGATTTGAT CAGAGACAAA ATTCATGAAA TGACATGAAA TTGTTACTGC
GTCACAGGTA ATGGTGCCTC TGGCGAAGGT TGGAACAGTC AACCCAGTGG TCATGAGAGA GAACCCATCA GAAAAGTACA
TTCAGATTGT GACTGTGGAT GGACATGATT TTTGGTTCAT GGGTTTTGTA AATTTTGACA AAGCAGTGAA GAACCTCTCA
GAAGGTATCT CACAGTTTGT AGTGCCAGGA GTGGCTGTGC CAGCCACTGG TTCCGGAGAA AATGGAAAGA ACTTTCAGTG
ATTTCTGTAT TGAATTATTT TCGTGTATAA TTTTGCTTAA AATTTTTTGT AGTGCATTGG ACCAATACTT TATTGTAAAT
TTTTGTATGA GTGAATGCTG CTATATATTT CATAATACAC AGTTAAAATA TGATGTCTGT TCTGCATCTT TTCTTTTTTC
TCCCTCTGAT GTGATCTTAC ATTTTTCAAT GATCTGTAAA ATATAATAAT GCAAACTAAT CAAAATGCAA TTAATTAGAA
GAGATTCTGA AGTGGGAAGG AAGGAGTAGT TTTCACATTT CAAAGCAGCT TCATTCCAAG TTCTTTTTTT TTCGAGTCCA
TTTTCTAATC AACAATTTGC CAAGTGTGGA GTTCTCCAAT CTGTATACAT ATCTCTATAG GGTAAAAAGA ATACATGACG
ATAGTCCCTT GTTATTTAGA TAGTCCCTTG TGGCAAATCT GTTGTGTGAA ACCCTCCAAG AAAAGTGGTG TGTAGATGGT
AAAGCTTTTA CCTTCCAAAA CTAATTGAGA AAAACGTGTT CTTCTTCAAT TAACTCATGT TGCAGTATTT TGTAAATTGA
CTTAACATGA TATGTTTTTG TTTCTGTATC CTTCCATATC TATACACTTC TCTTGTTCTA TGTGGGTATT TTTCTTCAAT
TACTTGTGTC AGATTTTATT TAGGGAAGTT CTCATTCAAA CCAACTC

>Vigan.04G218500.01
AGTTGGTCCA CGTATGTTCA CTTTGATTAA CATCTTAGTT ACTAAGCTTT CTTTTTCCCA CGGTTTCGAT GGCGGTGTAG
GACTACTATC TTTCTCGAAA GCGTAAGCGC GTAAAACTTT CCTTCCAAAC TCAACTACTA ATATGATACC TCCTATGTAT
GTATCATTCT GAACCAACCC AAACACCTCA TTTCCCAAAA ACTCAATTCC ATTGATCTTT CTCTTGCACA TAAAACAACA
TGAACACCAA CAGCGAAAAC ACCACCCAGA AGAACCAGCC GGTTCCAGAA GCACAAGGTG TGGCATCATC TTCATCGTCT
TCTCCGCCCA GCGTTAGCAC CGAGAATTGG GGAACTCACA TCATGGGCAC CCCAGCTGTT CCCAGCAGCC ACCCAGATAA
CAAAAAAGCA GCTTTACAGA GCGGTGGTTC CGGCGGACAA CCTCTGCCAG TTCAATACTA CCAACAACAT CCGTACGTCC
AACACAGCCC TGTGGACAAA CCCAGCAACA GTCCCATGGA GTCCATCCTT CACATGTTCG ATACGTGGAG CAAAAAGGCT
GAAGCAACTG CCCACAACGT CTGGCACAAC CTTAGAACTG GTCCATCAGT GTCTTCAGCT GCACTGGGGA AGATGAATCT
GACTGTGAAA GCAATATCAG AGGGTGGATT TGAGTCCCTT TACAAGCAAA CATTCTCAAC CTATCAAAAT GAGAAGCTCA
AGAAGAGCTT TGCTTGTTAT CTTTCAACTT CAACAGGTCC TGTTGCAGGA ACCCTTTACC TGTCCAATAT TCATGTAGCC
TTTTGCAGTG ATCGCCCATT GTCTTTCACC GCACCCTCTG GCCAGGAAAC TTGGACCTAC TACAAGGTAA TGGTGCCTCT
GGCGAAGGTT GGAACAGTCA ACCCAGTGGT CATGAGAGAG AACCCATCAG AAAAGTACAT TCAGATTGTG ACTGTGGATG
GACATGATTT TTGGTTCATG GGTTTTGTAA ATTTTGACAA AGCAGTGAAG AACCTCTCAG AAGGTATCTC ACAGTTTGTA
GTGCCAGGAG TGGCTGTGCC AGCCACTGGT TCCGGAGAAA ATGGAAAGAA CTTTCAGTGA TTTCTGTATT GAATTATTTT
CGTGTATAAT TTTGCTTAAA ATTTTTTGTA GTGCATTGGA CCAATACTTT ATTGTAAATT TTTGTATGAG TGAATGCTGC
TATATATTTC ATAATACACA GTTAAAATAT GATGTCTGTT CTGCATCTTT TCTTTTTTCT CCCTCTGATG TGATCTTACA
TTTTTCAATG ATCTGTAAAA TATAATAATG CAAACTAATC AAAATGCAAT TAATTAGAAG AGATTCTGAA GTGGGAAGGA
AGGAGTAGTT TTCACATTTC AAAGCAGCTT CATTCCAAGT TCTTTTTTTT TCGAGTCCAT TTTCTAATCA ACAATTTGCC
AAGTGTGGAG TTCTCCAATC TGTATACATA TCTCTATAGG GTAAAAAGAA TACATGACGA TAGTCCCTTG TTATTTAGAT
AGTCCCTTGT GGCAAATCTG TTGTGTGAAA CCCTCCAAGA AAAGTGGTGT GTAGATGGTA AAGCTTTTAC CTTCCAAAAC
TAATTGAGAA AAACGTGTTC TTCTTCAATT AACTCATGTT GCAGTATTTT GTAAATTGAC TTAACATGAT ATGTTTTTGT
TTCTGTATCC TTCCATATCT ATACACTTCT CTTGTTCTAT GTGGGTATTT TTCTTCAATT ACTTGTGTCA GATTTTATTT
AGGGAAGTTC TCATTCAAAC CAACTC

>Vigan.04G218500.01
ATGAACACCA ACAGCGAAAA CACCACCCAG AAGAACCAGC CGGTTCCAGA AGCACAAGGT GTGGCATCAT CTTCATCGTC
TTCTCCGCCC AGCGTTAGCA CCGAGAATTG GGGAACTCAC ATCATGGGCA CCCCAGCTGT TCCCAGCAGC CACCCAGATA
ACAAAAAAGC AGCTTTACAG AGCGGTGGTT CCGGCGGACA ACCTCTGCCA GTTCAATACT ACCAACAACA TCCGTACGTC
CAACACAGCC CTGTGGACAA ACCCAGCAAC AGTCCCATGG AGTCCATCCT TCACATGTTC GATACGTGGA GCAAAAAGGC
TGAAGCAACT GCCCACAACG TCTGGCACAA CCTTAGAACT GGTCCATCAG TGTCTTCAGC TGCACTGGGG AAGATGAATC
TGACTGTGAA AGCAATATCA GAGGGTGGAT TTGAGTCCCT TTACAAGCAA ACATTCTCAA CCTATCAAAA TGAGAAGCTC
AAGAAGAGCT TTGCTTGTTA TCTTTCAACT TCAACAGGTC CTGTTGCAGG AACCCTTTAC CTGTCCAATA TTCATGTAGC
CTTTTGCAGT GATCGCCCAT TGTCTTTCAC CGCACCCTCT GGCCAGGAAA CTTGGACCTA CTACAAGGTA ATGGTGCCTC
TGGCGAAGGT TGGAACAGTC AACCCAGTGG TCATGAGAGA GAACCCATCA GAAAAGTACA TTCAGATTGT GACTGTGGAT
GGACATGATT TTTGGTTCAT GGGTTTTGTA AATTTTGACA AAGCAGTGAA GAACCTCTCA GAAGGTATCT CACAGTTTGT
AGTGCCAGGA GTGGCTGTGC CAGCCACTGG TTCCGGAGAA AATGGAAAGA ACTTTCAGTG A

>Vigan.04G218500.01
MNTNSENTTQ KNQPVPEAQG VASSSSSSPP SVSTENWGTH IMGTPAVPSS HPDNKKAALQ SGGSGGQPLP VQYYQQHPYV
QHSPVDKPSN SPMESILHMF DTWSKKAEAT AHNVWHNLRT GPSVSSAALG KMNLTVKAIS EGGFESLYKQ TFSTYQNEKL
KKSFACYLST STGPVAGTLY LSNIHVAFCS DRPLSFTAPS GQETWTYYKV MVPLAKVGTV NPVVMRENPS EKYIQIVTVD
GHDFWFMGFV NFDKAVKNLS EGISQFVVPG VAVPATGSGE NGKNFQ*