GBrowse Details

Vigan.04G199600.01

Basic Information:
Name: Vigan.04G199600.01
Multiple alignment
Variant Information
Position: Chr04:29143489..29147920 (+ strand)
Length: 4432
Functional Information:
Description: Similar to Sieve element occlusion e. [Q2HUY0, Medicago truncatula]
InterPro: Sieve element occlusion, N-terminal (IPR027942)
Sieve element occlusion, C-terminal (IPR027944)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.37,0.18,4.73,1.53,0.21,2.64,2.43,17.95
Arabidopsis thaliana homolog: AT3G01680.1
Automatic updates:
Name: NM_001252909 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sieve element occlusion m (SEOM), mRNA.
PubMed ID: 20932300 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:29143489..29143767 (+ strand)
Length: 279
Type: five_prime_UTR
Position: Chr04:29143768..29143980 (+ strand)
Length: 213
Type: CDS
Position: Chr04:29144153..29144251 (+ strand)
Length: 99
Type: CDS
Position: Chr04:29144821..29145266 (+ strand)
Length: 446
Type: CDS
Position: Chr04:29145463..29145569 (+ strand)
Length: 107
Type: CDS
Position: Chr04:29145796..29145938 (+ strand)
Length: 143
Type: CDS
Position: Chr04:29146039..29146530 (+ strand)
Length: 492
Type: CDS
Position: Chr04:29147026..29147700 (+ strand)
Length: 675
Type: CDS
Position: Chr04:29147701..29147920 (+ strand)
Length: 220
Type: three_prime_UTR

>Vigan.04G199600.01 class=Sequence position=Chr04:29143489..29147920 (+ strand)
CAGAGGTTAT CACATATACT AAAGTGAAGA CATAGAGACA GCGGACAAGA GACAAAAGAA GCTTAAGCCT TTAAAGCTTC
CTTCCTCTCT CTTGGAGTCC CAAAAACTAA ATTACGAGGA AAGAAAGGAA GTTGTTTCAG GCGGGGTTAT TCCTTTCGAT
GCGTTATTAT ATGTAGGCCT ATCACATTGC ACTTGAAACG CAACTAACAT AAGCCTTATC ACCTCTTTCT TGCCTCAAAG
CTAGAGTTCT TCATCTGCAT TTTGTTTTCT GTAGCCACAA TGAATAGCAT TGGCAAGTTG GGTGCTATGC AACAACTTAT
AAAAGGTGGA AGAATGCTGC CTGCAGCTGC AATATCTGAT GACAGCGTTT TGGTGAAGAA AATAGTGGCA GAGCATAACC
CTGAGGGGAT TGAATATGAT GTCAGGCCCC TTCTCCAAAT AGTTGAGGAT GTTCTAATAC GTTCCACCTT GAGTTCTGAA
GGTGCTACAA CGGTATGATG CTGATAAAAA ATAAATAATC ATTTCATTCT CTCGTTGTTT AGGGACTAAA ATGTATTTTA
CAAATTTGAG GGTTATCATA TATTTAATGC TTGGTTTTAA TTAATATGAT GTTTTGTTTG AGTTTTTTTT TTCCTATTTT
CTGATTAACC TGTACATCTT TCAGGGTGCC CTTGGTCGTG TTGATCATGT GGAAGACAGA AGCTACCATC CTGGCCAAAC
AATAGAGGCT CTATCTGCTA AGATTGATAG GATTTCCTGT GAGGTGATAG AAAAATATCC TAAACATTAA TGTTAACATG
GCTATCACAA GAGTTTGAGC TACTACCTGA TATATTCTGT TCATAATTTC TAAAACGGAT ATATTATATT TAGGAAAATG
TTTTTAACAA TTAAAAAATA TTTAATTGCA GTATACTCTC GAAACCTTAT TTTCCTCATG TTTGGGTCAT GGCTGTCATA
GCTGGAACAT GTCTGCATGC ATAATTTCCA TCAAGGTTTA ATTATGTTTC AGCCTCTGAA ATTTGGGGTA AACCCGTTTT
CAGTCCCTCA GATTAAAATA GGTTCATTCT AATCTTCCAA ATTTAGTAAA ATATGGTTTT AGTCTCTAAA AATTAAATTT
GAAGGACAAA AGAACAGTTT TACAATTTAC TCCCTCAAAT TTAATGTTCA GGATTAAAAT CTTAACTTTT CAATTTTGAG
GGAGCAAAAT AAGTTCCAGT GAATTTGGGG GAACCAAAAC AAAAATCACC CTATATTTTG AGAGACTGAC ATAAGGGAGT
CTTTGCATCA ATGGAACAAA TTAACAATAT CAAAACCAAC ATGAAATTTC AGATTTCCTG CAAGACTCTC GGTGGTGATG
CACACTCCAC AACAGTTGGA ATATTTGACA TGCTTACAAT CTTCAAGTGG GATGTGAAAA TAGTGCTGAC CTTAGCTGCT
TTTGCTCTAA CGTATGGTGA ATTTTGGCTG CTGGCCCAAA TTCATGATAA GAACCAGCTA GCCAAATCAA TGGCAATTCT
GAAGCAACTA CCTAGTATCA TGGAGCATGC AAGCTCTCTA AAACCACGGT TTGATACTCT TAATGATCTA GTTAGAATCA
TAGTTGAGGT GACCAAGTGT GTCATAGACT TCCATGATCT GCCATCTCAA TATATTACGC AAGACATAAC AGCCTACACC
ACTGCCTACA ACTATATCCC AGTTGCTTCG TACTGGACCA TCAGAAGTAT TGTGGCTTGC GCAGCTCAAA TTACCAGCCT
CACTACCCTT GGCTATGAGT ATGTTTTCCA ATCATTGTCA AGTTTTTCAT GCTTCTTAGA ACATCCATGC TCAGCATTTT
GAATTCTCTT TATAAATGAA TGGTCATATG TATGAAGAGG TTCCATCTCC AACACCGTGT TTTAGATACA TACCTATGTC
AGGATTTTGT TTAATATCAC AGACACAAAT AATATACCAA AAACACTGTT TCAGGATATT CACATCCACT GATGCTTGGG
AGCTATCTAC TTTGATTTTC AAGCTCAAAA ACATAATTCA CCATCTCAGG CAGCTGCTAA ATAGTTGCCA CGAACATATT
GGTAGGCCAC TTTTGGCATA TTTTGTACTT TCATTTTTAA TTACAGAAGG GTTACATTGC TTTTACTTTA TTTCCTACTT
TCAAAATTTC GTATAGGAAA TAGTGACAAC AGAAAACAAT ATAAGTTGGT TTTACTGTTT TGTAAGTAAA CTTTTTTAGA
TAGGAAACAG TTAAAACAGT GTAACTCGTT AGCTAGCCAA CTAATTTAAT ATCATCATTC AATGTAGGGA AAAAGATGGA
TACTGAAGCT TACCAAATGC TGCGAGATTT GTTTTCAAAA CCCCACACTG ACAACATGAA GGTTCTCAAA GCTCTCATTT
ATGCACAGGA TGATATTCTA CCTCTATATG ACGGTGTTAC CAAGAAAAGG GTTTGATTTT CTAACACAGT ACCTACCTAC
AATATGCATC AGTATTATGA GAAGCTGTGT TGGTGATGCT AATCTTTGAA TAATCAATGG AAACAAACAG GTTAGCCTTG
AGCCATTGAG AAGGAAGAAT GTGCTGCTTC TATTTTCAGG CATGGAGATC TCCACCGATG AGCTTCTGAT TCTTGAACAG
ATCTACAACG AATCGAAGGC TCATGCACCG AGAATGGAGA GTAGATATGA ATTGGTTTGG ATCCCAATTG TGGATCCAAA
CTCGGAATGG ACAGAACCAA AGAAAAAACA GTTTGAGAGT CTGCAAGAAA ACATGTCATG GTACTCAGTG TATCATCCAT
CTTTGATAGG CAAGCCAGTC ATCTGGTTCA TCCAGAGCGA ATGGAAGTAC AAGAATAAGC CAATTCTTGT GGTTTTGGAT
CCACAAGGGA GAGTTTCTTG CCCCAATGCT ATTCACATGA TGTGGATTTG GGGAAGTGCT GCCTACCCTT TCACAAGTTC
TAGAGAAGAA GCTCTATGGA AGGAAGAGAC CTGGAGACTT GAATTGCTAG TAGATGGCAT TGATCAAGAA ATTTTGAACT
GGGTAAGCAT ATATTCTGAC AATCAATACA CTTTTTTTCT CCTTTTTACC ACTCATGAGG TCGAGTTGTT GTTTTTCTAC
TAGCATATAT GTGTGTGTGT GTGTGTAAAT ATATATATAT ATATATATAT ATAATTCAGC CTTTCCTTAG GAATGTCATG
AAAGGCTTAA CACCACAGTT CCAATCCAAA AGCATAATGC TGCTATCTCA ATGATTAAAA TAGTACAGGA CTAAATGAGC
CAATCAAATT TTAACAGGAA AAATGTCAAG TATGGCCACT AATTCAGGTG GAGAAATGAA ATGTTACTAT GTGTAGTTAT
GACAGCACAC TGCGGTCAAT GCACTTACTA TGTTTTCTGA AACACTGTAT ATTAACTAAA TTTATCCATG TTAACTACAT
GAAATGGGTC TCGCTCTATT TAACGAGTTT AGAGAATAAT GTAGAATGTG TTACTAATGT TAAGAAAAAT AACAAATGCC
AATTTCTGAT TGCGCAGATT AAGGATGGAA AATACATTTT CTTGTTTGGG GGGGATGATC CTGAATGGGT AAGAAGATTT
GTGAAGGAAG CCCGCAGGGT TGCAATGGCT ACACAAATAC CCTTAGAGAT GGTATATGTT GGGAAAAGCA ATAAAAGGGA
GCAAGTGCAG AAAATCATCG ACACAATAAT TCGTGATAAA CTGAACACTC AATATTGGTC AGAGCAGAGC ATGATATGGT
TCTTCTGGAC CCGTCTTCAG AGTATGCTGT TCTCCAAGCT TCAACTGAAG CAGACCGATG ACGACGACCA TGTGATGCAG
GAAATCAAGA AGCTTCTGAG CTATGACAAA CAGGGAGGAT GGTTTGTTCT GGCAAGAGGG TCTCACGTTG TGGTAAATGG
GCATGCCACA ACCGGGTTCC GAACCCTGGT GGAGTTTGAT TCCGTGTGGA AAGATGATGC TGACAGGGAA GGGTTTGAAC
CAGCTTTTAA GAATCACTAT GACAAAGTTC ATTCCGTTGT TAGTCCTTGC TGCAGATTTG AATTCTCTCA TGCAATGGGG
AGAATCCCAG AGAGGCTCAC GTGCCCTGAG TGTCGCCGCA ACATGCACGT GCTCACCACC TTCCAGTGCT GCCATGATGA
AAAAATTGAC GAGGACTTTT TTGTCAGCAC CGTAACTCCT CCCACCAATT GATCAATCAT TCTTCACTCA CTATTGCTGC
TTGTGTTTCT CTCAAATTTC AACCACAGCC TTGTGTCTTT ACTACATGTG TTTGTTCTTT TTATCACATA TTAATGTAAT
AAAGTGTACG GTGAGGTTTG GTCTCCCCAC TGTGTGATGA GAAATTATTA TGACTTTTGT CCCAAGTTTG GATGATCAAT
AATAAAGTTA CAATTTCATT TACTTCTCGT AA

>Vigan.04G199600.01
CAGAGGTTAT CACATATACT AAAGTGAAGA CATAGAGACA GCGGACAAGA GACAAAAGAA GCTTAAGCCT TTAAAGCTTC
CTTCCTCTCT CTTGGAGTCC CAAAAACTAA ATTACGAGGA AAGAAAGGAA GTTGTTTCAG GCGGGGTTAT TCCTTTCGAT
GCGTTATTAT ATGTAGGCCT ATCACATTGC ACTTGAAACG CAACTAACAT AAGCCTTATC ACCTCTTTCT TGCCTCAAAG
CTAGAGTTCT TCATCTGCAT TTTGTTTTCT GTAGCCACAA TGAATAGCAT TGGCAAGTTG GGTGCTATGC AACAACTTAT
AAAAGGTGGA AGAATGCTGC CTGCAGCTGC AATATCTGAT GACAGCGTTT TGGTGAAGAA AATAGTGGCA GAGCATAACC
CTGAGGGGAT TGAATATGAT GTCAGGCCCC TTCTCCAAAT AGTTGAGGAT GTTCTAATAC GTTCCACCTT GAGTTCTGAA
GGTGCTACAA CGGGTGCCCT TGGTCGTGTT GATCATGTGG AAGACAGAAG CTACCATCCT GGCCAAACAA TAGAGGCTCT
ATCTGCTAAG ATTGATAGGA TTTCCTGTGA GATTTCCTGC AAGACTCTCG GTGGTGATGC ACACTCCACA ACAGTTGGAA
TATTTGACAT GCTTACAATC TTCAAGTGGG ATGTGAAAAT AGTGCTGACC TTAGCTGCTT TTGCTCTAAC GTATGGTGAA
TTTTGGCTGC TGGCCCAAAT TCATGATAAG AACCAGCTAG CCAAATCAAT GGCAATTCTG AAGCAACTAC CTAGTATCAT
GGAGCATGCA AGCTCTCTAA AACCACGGTT TGATACTCTT AATGATCTAG TTAGAATCAT AGTTGAGGTG ACCAAGTGTG
TCATAGACTT CCATGATCTG CCATCTCAAT ATATTACGCA AGACATAACA GCCTACACCA CTGCCTACAA CTATATCCCA
GTTGCTTCGT ACTGGACCAT CAGAAGTATT GTGGCTTGCG CAGCTCAAAT TACCAGCCTC ACTACCCTTG GCTATGAGAT
ATTCACATCC ACTGATGCTT GGGAGCTATC TACTTTGATT TTCAAGCTCA AAAACATAAT TCACCATCTC AGGCAGCTGC
TAAATAGTTG CCACGAACAT ATTGGGAAAA AGATGGATAC TGAAGCTTAC CAAATGCTGC GAGATTTGTT TTCAAAACCC
CACACTGACA ACATGAAGGT TCTCAAAGCT CTCATTTATG CACAGGATGA TATTCTACCT CTATATGACG GTGTTACCAA
GAAAAGGGTT AGCCTTGAGC CATTGAGAAG GAAGAATGTG CTGCTTCTAT TTTCAGGCAT GGAGATCTCC ACCGATGAGC
TTCTGATTCT TGAACAGATC TACAACGAAT CGAAGGCTCA TGCACCGAGA ATGGAGAGTA GATATGAATT GGTTTGGATC
CCAATTGTGG ATCCAAACTC GGAATGGACA GAACCAAAGA AAAAACAGTT TGAGAGTCTG CAAGAAAACA TGTCATGGTA
CTCAGTGTAT CATCCATCTT TGATAGGCAA GCCAGTCATC TGGTTCATCC AGAGCGAATG GAAGTACAAG AATAAGCCAA
TTCTTGTGGT TTTGGATCCA CAAGGGAGAG TTTCTTGCCC CAATGCTATT CACATGATGT GGATTTGGGG AAGTGCTGCC
TACCCTTTCA CAAGTTCTAG AGAAGAAGCT CTATGGAAGG AAGAGACCTG GAGACTTGAA TTGCTAGTAG ATGGCATTGA
TCAAGAAATT TTGAACTGGA TTAAGGATGG AAAATACATT TTCTTGTTTG GGGGGGATGA TCCTGAATGG GTAAGAAGAT
TTGTGAAGGA AGCCCGCAGG GTTGCAATGG CTACACAAAT ACCCTTAGAG ATGGTATATG TTGGGAAAAG CAATAAAAGG
GAGCAAGTGC AGAAAATCAT CGACACAATA ATTCGTGATA AACTGAACAC TCAATATTGG TCAGAGCAGA GCATGATATG
GTTCTTCTGG ACCCGTCTTC AGAGTATGCT GTTCTCCAAG CTTCAACTGA AGCAGACCGA TGACGACGAC CATGTGATGC
AGGAAATCAA GAAGCTTCTG AGCTATGACA AACAGGGAGG ATGGTTTGTT CTGGCAAGAG GGTCTCACGT TGTGGTAAAT
GGGCATGCCA CAACCGGGTT CCGAACCCTG GTGGAGTTTG ATTCCGTGTG GAAAGATGAT GCTGACAGGG AAGGGTTTGA
ACCAGCTTTT AAGAATCACT ATGACAAAGT TCATTCCGTT GTTAGTCCTT GCTGCAGATT TGAATTCTCT CATGCAATGG
GGAGAATCCC AGAGAGGCTC ACGTGCCCTG AGTGTCGCCG CAACATGCAC GTGCTCACCA CCTTCCAGTG CTGCCATGAT
GAAAAAATTG ACGAGGACTT TTTTGTCAGC ACCGTAACTC CTCCCACCAA TTGATCAATC ATTCTTCACT CACTATTGCT
GCTTGTGTTT CTCTCAAATT TCAACCACAG CCTTGTGTCT TTACTACATG TGTTTGTTCT TTTTATCACA TATTAATGTA
ATAAAGTGTA CGGTGAGGTT TGGTCTCCCC ACTGTGTGAT GAGAAATTAT TATGACTTTT GTCCCAAGTT TGGATGATCA
ATAATAAAGT TACAATTTCA TTTACTTCTC GTAA

>Vigan.04G199600.01
ATGAATAGCA TTGGCAAGTT GGGTGCTATG CAACAACTTA TAAAAGGTGG AAGAATGCTG CCTGCAGCTG CAATATCTGA
TGACAGCGTT TTGGTGAAGA AAATAGTGGC AGAGCATAAC CCTGAGGGGA TTGAATATGA TGTCAGGCCC CTTCTCCAAA
TAGTTGAGGA TGTTCTAATA CGTTCCACCT TGAGTTCTGA AGGTGCTACA ACGGGTGCCC TTGGTCGTGT TGATCATGTG
GAAGACAGAA GCTACCATCC TGGCCAAACA ATAGAGGCTC TATCTGCTAA GATTGATAGG ATTTCCTGTG AGATTTCCTG
CAAGACTCTC GGTGGTGATG CACACTCCAC AACAGTTGGA ATATTTGACA TGCTTACAAT CTTCAAGTGG GATGTGAAAA
TAGTGCTGAC CTTAGCTGCT TTTGCTCTAA CGTATGGTGA ATTTTGGCTG CTGGCCCAAA TTCATGATAA GAACCAGCTA
GCCAAATCAA TGGCAATTCT GAAGCAACTA CCTAGTATCA TGGAGCATGC AAGCTCTCTA AAACCACGGT TTGATACTCT
TAATGATCTA GTTAGAATCA TAGTTGAGGT GACCAAGTGT GTCATAGACT TCCATGATCT GCCATCTCAA TATATTACGC
AAGACATAAC AGCCTACACC ACTGCCTACA ACTATATCCC AGTTGCTTCG TACTGGACCA TCAGAAGTAT TGTGGCTTGC
GCAGCTCAAA TTACCAGCCT CACTACCCTT GGCTATGAGA TATTCACATC CACTGATGCT TGGGAGCTAT CTACTTTGAT
TTTCAAGCTC AAAAACATAA TTCACCATCT CAGGCAGCTG CTAAATAGTT GCCACGAACA TATTGGGAAA AAGATGGATA
CTGAAGCTTA CCAAATGCTG CGAGATTTGT TTTCAAAACC CCACACTGAC AACATGAAGG TTCTCAAAGC TCTCATTTAT
GCACAGGATG ATATTCTACC TCTATATGAC GGTGTTACCA AGAAAAGGGT TAGCCTTGAG CCATTGAGAA GGAAGAATGT
GCTGCTTCTA TTTTCAGGCA TGGAGATCTC CACCGATGAG CTTCTGATTC TTGAACAGAT CTACAACGAA TCGAAGGCTC
ATGCACCGAG AATGGAGAGT AGATATGAAT TGGTTTGGAT CCCAATTGTG GATCCAAACT CGGAATGGAC AGAACCAAAG
AAAAAACAGT TTGAGAGTCT GCAAGAAAAC ATGTCATGGT ACTCAGTGTA TCATCCATCT TTGATAGGCA AGCCAGTCAT
CTGGTTCATC CAGAGCGAAT GGAAGTACAA GAATAAGCCA ATTCTTGTGG TTTTGGATCC ACAAGGGAGA GTTTCTTGCC
CCAATGCTAT TCACATGATG TGGATTTGGG GAAGTGCTGC CTACCCTTTC ACAAGTTCTA GAGAAGAAGC TCTATGGAAG
GAAGAGACCT GGAGACTTGA ATTGCTAGTA GATGGCATTG ATCAAGAAAT TTTGAACTGG ATTAAGGATG GAAAATACAT
TTTCTTGTTT GGGGGGGATG ATCCTGAATG GGTAAGAAGA TTTGTGAAGG AAGCCCGCAG GGTTGCAATG GCTACACAAA
TACCCTTAGA GATGGTATAT GTTGGGAAAA GCAATAAAAG GGAGCAAGTG CAGAAAATCA TCGACACAAT AATTCGTGAT
AAACTGAACA CTCAATATTG GTCAGAGCAG AGCATGATAT GGTTCTTCTG GACCCGTCTT CAGAGTATGC TGTTCTCCAA
GCTTCAACTG AAGCAGACCG ATGACGACGA CCATGTGATG CAGGAAATCA AGAAGCTTCT GAGCTATGAC AAACAGGGAG
GATGGTTTGT TCTGGCAAGA GGGTCTCACG TTGTGGTAAA TGGGCATGCC ACAACCGGGT TCCGAACCCT GGTGGAGTTT
GATTCCGTGT GGAAAGATGA TGCTGACAGG GAAGGGTTTG AACCAGCTTT TAAGAATCAC TATGACAAAG TTCATTCCGT
TGTTAGTCCT TGCTGCAGAT TTGAATTCTC TCATGCAATG GGGAGAATCC CAGAGAGGCT CACGTGCCCT GAGTGTCGCC
GCAACATGCA CGTGCTCACC ACCTTCCAGT GCTGCCATGA TGAAAAAATT GACGAGGACT TTTTTGTCAG CACCGTAACT
CCTCCCACCA ATTGA

>Vigan.04G199600.01
MNSIGKLGAM QQLIKGGRML PAAAISDDSV LVKKIVAEHN PEGIEYDVRP LLQIVEDVLI RSTLSSEGAT TGALGRVDHV
EDRSYHPGQT IEALSAKIDR ISCEISCKTL GGDAHSTTVG IFDMLTIFKW DVKIVLTLAA FALTYGEFWL LAQIHDKNQL
AKSMAILKQL PSIMEHASSL KPRFDTLNDL VRIIVEVTKC VIDFHDLPSQ YITQDITAYT TAYNYIPVAS YWTIRSIVAC
AAQITSLTTL GYEIFTSTDA WELSTLIFKL KNIIHHLRQL LNSCHEHIGK KMDTEAYQML RDLFSKPHTD NMKVLKALIY
AQDDILPLYD GVTKKRVSLE PLRRKNVLLL FSGMEISTDE LLILEQIYNE SKAHAPRMES RYELVWIPIV DPNSEWTEPK
KKQFESLQEN MSWYSVYHPS LIGKPVIWFI QSEWKYKNKP ILVVLDPQGR VSCPNAIHMM WIWGSAAYPF TSSREEALWK
EETWRLELLV DGIDQEILNW IKDGKYIFLF GGDDPEWVRR FVKEARRVAM ATQIPLEMVY VGKSNKREQV QKIIDTIIRD
KLNTQYWSEQ SMIWFFWTRL QSMLFSKLQL KQTDDDDHVM QEIKKLLSYD KQGGWFVLAR GSHVVVNGHA TTGFRTLVEF
DSVWKDDADR EGFEPAFKNH YDKVHSVVSP CCRFEFSHAM GRIPERLTCP ECRRNMHVLT TFQCCHDEKI DEDFFVSTVT
PPTN*