GBrowse Details

Vigan.04G197500.01

Basic Information:
Name: Vigan.04G197500.01
Multiple alignment
Variant Information
Position: Chr04:28874526..28881035 (+ strand)
Length: 6510
Functional Information:
Description: Similar to elongator complex protein 6-like. [XP_004492218.1, Cicer arietinum]
InterPro: Uncharacterised protein family UPF0405 (IPR018627)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.73,7.01,4.00,5.03,6.42,4.59,4.11,4.24
Arabidopsis thaliana homolog: AT4G10090.1
Automatic updates:
Name: NM_001252780 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UPF0405 protein C3orf75 homolog (LOC100797712), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:28874526..28875078 (+ strand)
Length: 553
Type: five_prime_UTR
Position: Chr04:28875079..28875318 (+ strand)
Length: 240
Type: CDS
Position: Chr04:28876207..28876279 (+ strand)
Length: 73
Type: CDS
Position: Chr04:28878650..28878846 (+ strand)
Length: 197
Type: CDS
Position: Chr04:28878925..28879071 (+ strand)
Length: 147
Type: CDS
Position: Chr04:28880551..28880676 (+ strand)
Length: 126
Type: CDS
Position: Chr04:28880677..28881035 (+ strand)
Length: 359
Type: three_prime_UTR

>Vigan.04G197500.01 class=Sequence position=Chr04:28874526..28881035 (+ strand)
TTTTGTTTCA ATGAGTCCGA CACGATAGTG AATGAAATTT CCGAAGCATG GGTTTTTAAT TCGAATACGA GATTCGCAGC
AGTGAAAGTA GTACTCTGCA ATGACTACTT CGACACTTTT CGGAATAACC ACTCCGGAAA TCTTACCGCG GTACCGCGTC
AGGTTCACCC ACGTGGGCGT TAGCCGGGAG CAAGGGAAGT TGAGCTGATT GCCATCGACG ACCGGGGGTA TTATGGCAAC
GACAGATCGA CTGCGGAGAT GCAACACACT GTTTACAGCG GCACATGGTT TACGGCAGCC GCAGTGAAGG AGAATGGGGG
AAGAATAGGT CAGGTGGTAA AAACGAACTC AAAGGGATTT TTGTCTTTTT AATTTTGCTA CGGGGTTGCC GGTTGCAATT
AAGGTGGTGC AGGACGCAAA AGTCCTAACT AATGGTTCGG GTTTTTGGGC CGAGAAAACG AGAAGAAAAA AACCGTTGAT
TATTCGGGTC ATGCCGGACG CAGTCGGATT GGAAGTTTCA TAAACGGTGA CCTGAAAGCA GAAGAAGCAG AAGATGGAGC
AGAAAAATTG GAACCTTCTG GACGAATCGC TGGGGCTTCA CATTAATGAC GACGCGAAGC CATGGCCTCT GTGTGGTCGC
TTCGTGCTTG TGGAGGACTG TGTTGACACA AGCGCCGCTT TCGTTCTTCA CCACATCCTC AAACGCTCCT TCTCTTCTCA
CCCTTCTTCC GCCGTTCTCT TCCTCGCTTT TTCTCATCCT TTCTCCCACT ACGATCGCGT CCTCCGAAAG CTCGTATTTC
CCTTCTCTCT CTATACATAT ATGCTCTCTT TTTTTCATGG GTACTGTAAT CTTGTATTTA TGTACGTTTC TTACTGTTGA
TTTGGTGGTG AAATTGCTTT TGCTATTGAT AAGGTGGCTA AATATTCATT TCACATTGGA TGCATTTGAT TCTGTTATTA
GCTAATTGCA TTTTCAACGA CTGTAGTGCC GGAGGCACTA TGACAGTGCC AGTCTGTCTA TCTTTATTTT TGGTGGATAC
TTGAAACTGG TCCTTGAAGG TATAGACCAT GCCCTGAGAA CTATAAACTG AAAGAAAGGT TTGTGAAAGT GCAATTTGTC
ACTTAGTTTA ATCTAAAAAT GAAAAACGTA CTGTGAATAA TACTTTAACA TAATTTTAGG GACTACAGTT ATAGACTGAT
AGCATGAGGA TTTATTTTGA AGTTTCTCCC TGGTAGGAAC TAAGACTAAG GACCAATTTG GGTATTGGAC TTTTTTTCTT
GAGTAAACAA TCAATTTGGT ATAGCGCGTG ATATTTCGCA AACTAAATTG ATCGTTTGCT CTTTTGTTTT CGTCGTAGTT
TGGTTTCATA ACATGCTAGT CAATTGTTTG TCAACCAGCA TTGGTTGACC ACAGCGGTAG TAAATTGTGT CCCTCAATCA
AGTGGTCCAG GTTTTGAATC CTGATTATGC CACTTTAGGT ATGAAGTAAA CCATGTTGGG AGAGGAACAC TCACCTTCTG
TGCCCTAAAG TTTCTGAATC ATTGCTTCCA GTGATGAACG ATCCTTACTA ATACCATGGT AAAAATATTG TTTGTCAATA
TCGTTTTCTT GTACTCTGTT ACGATGTCGT TGTTTACTTG GTTGTATTTA CCAATGTTCA CGGGTACTTG TGATGTGATA
GGGTTGCAAC TTAACTGCTC AAAGAGATAA TGGCAGATTC TTTTTCCTTC CTATGCTTAT GTTTCAGTGT CCAGGTAAGA
AACTTTGTTA TTGGTATTTA GCTCTTTTTT CTCATTGTTT GTTTGAAAAA GATTACTGAT GCAAGAATGA ATTTGTTCCA
ATAGTTTGTC TTTAATTGTT ACTGGTGTAC TGTGTTTAAA GTTTAGATCA GAAACTACAT GAGTTTGTCA TTCATGAGTC
TTTCCCTAAC TCTCCTTGAT TACTTGATTT CATTGTTATA ATGGTTAAAG TAGGTGACGG AGTTACAATT ATGTCTAGGC
GATGTATATA GAAGAAATGC ACAAGAATGG ATAAATAAGT TTAAATGGAG AGTTAAGGAG TAATTCGGTA TTAATATGTG
ATTGTTGTAT GGAAAGTATG AACCAGAGAC ACATTGTGAA ATTCTTGATG TTCTTCAGTA ACTGGACAAT TTTCTTAAAA
TCTATTGATG CTTTTTGACG TCAGTAGTAG CAATACAAAT TTTTACTTTT AGATACTCAA TATACTTCCA CTAAAAGAAA
CAGAGGAGCA TGAAGTTTAG GTGGCTATAG ATAATATAGA AGTAGTCAAA TTAGTTAGTA AACAATTGAT GAAAAAGAAG
TGGAATTTTT TAGTGGTCTA CTTGTGTGTA GCTAGTTCTT ATCCTTGTTT GGGAGGATAT GCAGGTAAAT GAAGATAGTG
AAAACTTTCC TTTATAAGTC ACGTATGGAC TGTAAATCTC ACGACATATA TTTGAGGTTG AGAATTTATC CGTGTTTGGG
TCCCCTCATT CACAATGCAG GTTTTGTAGC TTTCAGTAGT AGTGAATCAA AAGCAAGGTT TGAAAAACAT ATTCAACATG
AAAGAATTTA AAGATCTAAA TTTTAGATGG AGAAAAATGA ATCAGCAGCC CGGTGTTTGA AGCACAAAAG ATTTGTTGTG
TTAATTAATG ATATACGAAA AGTATTTGAG CTTATATGAA AGTGTTTTGG CTAGTCAACA GCGATGAGAA GCCAACAATG
TGTTTTACAT ATGAAGACAC TTGAAATTTG GTTCATGTGT TTCTAAACTT CAATAGTTTA ATAAAATCCT TTATTCAACA
ATTTCAGCCT GAAACTGTCA AAGAAATTAG AGTGTTTATA CTTTATTCAT CCGATTAAAG TAAATACAGT CAACTATTAT
GTTAGATTGT TAGATATCCC ATATTGACTT TTAAGTTGGT TTTGTTAAGT TTAGTTAAAG TCCACTTTCT AAGATGGGAT
TAGAACATGT ATTAGCAAGT CAACTATTAT GTTAGATTGT TAAATATCCC ATATTGACTT ATGAGCTAGT TTTGTTAAGT
TTAGTTAAGC TTAAAGTCCA CTTTCTAAGA TGGGATTAGA ACATATATTA GCAATGTATA CTGGGTCATT ATATCATCTA
CTATCGTGTC ATTATTGGAC CATCCATCCA TCCATAAATC TCTATTCTCA TGTTTGAGAT GTTCAGCCCT TGGTGGTGGG
AATTTGTTGA ATACCACATT TTCATAGAGA TATGATCAAA TTATAATATA TAAGTAGGAT TAAACCTCAT CTTTTATGTC
AATTTTGTGA GATTGAGTTA GGTTTAAAGT CTACTTTCCA AGCTATTAAA AAGTAGCAAA AGATTGTTTT CACAATTTAT
TATATGAAGC TAAGAATGAG TCAAAAAAGA AGATGTCCAG AAGAAGAAAT AACACTAATT TTAATCTAAT TAATCTTGAC
TATATATTTC AAGATGATCC ATTCTCTCCT TAGATCAAGG AAAGAGAACA TCCACTGATG GAAATTGGGT GGTTGCTGCC
TAGAAATGAT ACTGATAGGG ATATATGGAA GTTGGTGACA ACATATCCAA ATATATCATG CTATAGGCAT GACAGGAATC
TAATGACTGG TGTGATATCT TCTAGACCTA TTCTTTCTAA TGGTTTATTT GCTGATAGCA AAAGTTCCGT GGTTAACATT
GTAGGAGAGG AAAAATTTAG CAAAATGTTA TACCTGAAGA TTTTTCCAGT TCTATTATTT TACGAAATTT TAGAGACCAT
GGTATTGATA AATATCTCAG AGTAGTTAAG GGTCAATAGA ATGGCAAGTG AAAATCATTA TTTTGGTGCA GTGTTGAAAG
TTCTATTCCA TTTAAGCATT TACATCCCAT AATTCTGAAT TAGCAACTGA TCATAATGCG AGGTGTGAAG TTTGCGTGAA
CACCATTCAT CTGATGAGAT TAAGAAGTTA ATAATTATAA GAAAAAACAA CTAGTTCCAT TCCATGTCGA CCCTTGTGTG
GTTCTGTCTA CTCCTTACGT ATCTATCAAT TCAAACATAG CTTTAGGAAC ATTAATGAAA TTTAGAAATG TAGAGTCTGT
TGGATTATAT ACATCCCTGA GTAACAAATT TTTTTGATGC CTAGGGGAAG GAAAACCCAA TCATGATGGG CTTGCTTCTG
TGTTTGAGCA AATTGAAAGA GTGATCACTC TGTTACATCA AGACAAGAAA TCCATCTCTA TCATTATAGA TGATATATCT
TTTCTTGAAG TTGCTGCTAA TGGTTCTTCA GATGATGTTT TAAACTTGCT GCATTATTGC CATACGTTAA CATCAGAATA
TGTAAGATAA TACTACCTTT TCTTTGTTTG AAACTTATTC CTATGTTTTT AGTTCTTCAT TTCTGTGTTT GTGTGACAGG
GTTGTGCATT GATTGCACTT GATCATAAAG ATATTTATTT GAATGGAGAC AGGACTGCTG TTATCTTAGA GATGGAGTAC
CGTGCTGACA TTTTGGTCAA GGCTGAACCA TTGGCCACTG GTTTAGCAAA AGATGTGCAT GGTCAGGTAG ACTTGTATCA
CTCTGCACTG CAGTATAATA AATTCATACT GAAACTGTTT ATACAGACCC AAGTTTTTCT AGATCTTAAT CTTATTGAGA
ATAACCCGTT TAACTTCCTT TGGAGTTGAC ACCGACACCT TATAGGTTTT CCTGTCCATT GTAATCTAAG TTTATGACAG
AATTGTTATT TTATATTTTT TCACTTTCTT GATTAAATAT ACCCTGCCAC TGCTGCCTTT CTATTGAAAT GGAATATAGA
ATAGGATACC TTTGGCTTTC AAAACATGGA TTGCTACAAG GTTTTCAGTT TGATCTTTAC TAAGAAACCT TATCTTAAGT
TTTATCGTTT TGTAATGTCT GCTTAGAAGT CCTCATATTT AAACTCCATT TCTCCATGAG GTGTCTTTTC AAGTGTATAT
GATGAACTTA TTTTACTCTA ATTCTTTATG GTGTTTGGGT AAAAATCAAA TGACTTAACT TTTCATATAG ACCTATTGAT
TACGTTTTTC AAGTTTCTCA ATTTTTAAGT TAAAGAATTG AATCTGAATT CAAACAAAAG CAGTATTGTG TTAAAAATTC
ACCAGGGTAT AAGTAGTCTG CTTATTGAAT TTGATTTCTC TTTTCTATTC TTTCTGATTA ATCGTCACAG TCCATATACG
AGGGAGCTCC AAGGGTTGCT GTTATGACAA AAGTATCAGA ACAGTTAATA AACAGAGTAA TATGGAATAT CAGAGAAAAG
TTTATTGATG GCAGATTCTA TTTTTTCTTT CCCTGCTACC ATGGATGGTC AGGATACAAT GAAAAGCAAT TAAACAACCA
TAATAGAAAG TCACAGAGAG AATTTCCCAA AGAGATGGGT CAAGTTTCTT TTTCCTCCAC TCTTTCTCTT TCCTCTAACA
GAATTTGTAC TCTGTCAACA CTGAAATCCA CGTAATTTTG AGCTTGCCCA CTTCACACGT GTGCTTTTCC TGCACTCAGC
CTCTCCTTTT GGTTCCACCT CCTTTTCAAC CATTACAGTT GCTTTTTGTA TTTCAGTCAA AGAAAAATGT CTTATTTTTA
TGTTTTGTAG CTAGGCCTAG CTTAAATTTA TTCTATTTCA GGTTCATCTT AAAATATAGC AGAGCACTTG TTACAGAGTT
GATCTGCAGA CCCATAAACG CAATGACATT TTCTTCTATA TCATGTTTTG ACCCACAATT CATTTTCCCC AGCTTCTCAT
TTTAGTACCT CCAAAGTTTC AAATAAGGCA TTCTGATCTT TATTGATTAA ATGTAAAAGA GATAACTACC ATTATTGTTT
ATCTCCCCTT TGTTGAATTT TGTTGTATAA GTGACACTGC AACTGCTAAT AGATCATGTT ACTGTTTGCG TTGATTCCTT
GGATTTCTCT TAGATGATGA TTTAATATAA AAACTTCTCT GTAACTTCTG ATTAAATCAT ATATCCACCG TGGTTGATTT
TGTTTATTGT TCGTTTTATA TGTAGTTGAT GGTGTTAAAT AAGGAAACAC AACATCAGCA TGGAATTACA GCCATTAAGA
GTTACAATTT TCACTTCAAG ATCAAGGAAA ATGGCATCGA GTGCTTTTAT CCTGGTACAA AAATCCAATG ATGATCAATG
ATTCTTGATA GGTACAATAC TTAATCGATT GTGAGATGAT AGAATCCAAT GCGATTATAC TTGAATTGGT GATTGACACA
CTTAGAGTTA TTGGTTTTAT TTGTGCATCA CTGATTGGTG TCAATGATTT TTTTCACTTG ATCGTGTATT ATGAGTAATG
AAAGCCTTGG AGCAGTAAAT TTTAGCCATA CATTCAAAAT GGATGCATAA GGTTAGATTT AAATAAAATA ATATTAATTA
TTTGCATAGT TTTAAGACGA AGATTAACTT ATCTCCTGCT TTCATTAGAT ACGTGAAAAA GATTCAGTTA AATTTATTAT
GAAGGGAAAT GTGGAGAGCA TGAGTTGAAT 

>Vigan.04G197500.01
TTTTGTTTCA ATGAGTCCGA CACGATAGTG AATGAAATTT CCGAAGCATG GGTTTTTAAT TCGAATACGA GATTCGCAGC
AGTGAAAGTA GTACTCTGCA ATGACTACTT CGACACTTTT CGGAATAACC ACTCCGGAAA TCTTACCGCG GTACCGCGTC
AGGTTCACCC ACGTGGGCGT TAGCCGGGAG CAAGGGAAGT TGAGCTGATT GCCATCGACG ACCGGGGGTA TTATGGCAAC
GACAGATCGA CTGCGGAGAT GCAACACACT GTTTACAGCG GCACATGGTT TACGGCAGCC GCAGTGAAGG AGAATGGGGG
AAGAATAGGT CAGGTGGTAA AAACGAACTC AAAGGGATTT TTGTCTTTTT AATTTTGCTA CGGGGTTGCC GGTTGCAATT
AAGGTGGTGC AGGACGCAAA AGTCCTAACT AATGGTTCGG GTTTTTGGGC CGAGAAAACG AGAAGAAAAA AACCGTTGAT
TATTCGGGTC ATGCCGGACG CAGTCGGATT GGAAGTTTCA TAAACGGTGA CCTGAAAGCA GAAGAAGCAG AAGATGGAGC
AGAAAAATTG GAACCTTCTG GACGAATCGC TGGGGCTTCA CATTAATGAC GACGCGAAGC CATGGCCTCT GTGTGGTCGC
TTCGTGCTTG TGGAGGACTG TGTTGACACA AGCGCCGCTT TCGTTCTTCA CCACATCCTC AAACGCTCCT TCTCTTCTCA
CCCTTCTTCC GCCGTTCTCT TCCTCGCTTT TTCTCATCCT TTCTCCCACT ACGATCGCGT CCTCCGAAAG CTCGGTTGCA
ACTTAACTGC TCAAAGAGAT AATGGCAGAT TCTTTTTCCT TCCTATGCTT ATGTTTCAGT GTCCAGGGGA AGGAAAACCC
AATCATGATG GGCTTGCTTC TGTGTTTGAG CAAATTGAAA GAGTGATCAC TCTGTTACAT CAAGACAAGA AATCCATCTC
TATCATTATA GATGATATAT CTTTTCTTGA AGTTGCTGCT AATGGTTCTT CAGATGATGT TTTAAACTTG CTGCATTATT
GCCATACGTT AACATCAGAA TATGGTTGTG CATTGATTGC ACTTGATCAT AAAGATATTT ATTTGAATGG AGACAGGACT
GCTGTTATCT TAGAGATGGA GTACCGTGCT GACATTTTGG TCAAGGCTGA ACCATTGGCC ACTGGTTTAG CAAAAGATGT
GCATGGTCAG TTGATGGTGT TAAATAAGGA AACACAACAT CAGCATGGAA TTACAGCCAT TAAGAGTTAC AATTTTCACT
TCAAGATCAA GGAAAATGGC ATCGAGTGCT TTTATCCTGG TACAAAAATC CAATGATGAT CAATGATTCT TGATAGGTAC
AATACTTAAT CGATTGTGAG ATGATAGAAT CCAATGCGAT TATACTTGAA TTGGTGATTG ACACACTTAG AGTTATTGGT
TTTATTTGTG CATCACTGAT TGGTGTCAAT GATTTTTTTC ACTTGATCGT GTATTATGAG TAATGAAAGC CTTGGAGCAG
TAAATTTTAG CCATACATTC AAAATGGATG CATAAGGTTA GATTTAAATA AAATAATATT AATTATTTGC ATAGTTTTAA
GACGAAGATT AACTTATCTC CTGCTTTCAT TAGATACGTG AAAAAGATTC AGTTAAATTT ATTATGAAGG GAAATGTGGA
GAGCATGAGT TGAAT

>Vigan.04G197500.01
ATGGAGCAGA AAAATTGGAA CCTTCTGGAC GAATCGCTGG GGCTTCACAT TAATGACGAC GCGAAGCCAT GGCCTCTGTG
TGGTCGCTTC GTGCTTGTGG AGGACTGTGT TGACACAAGC GCCGCTTTCG TTCTTCACCA CATCCTCAAA CGCTCCTTCT
CTTCTCACCC TTCTTCCGCC GTTCTCTTCC TCGCTTTTTC TCATCCTTTC TCCCACTACG ATCGCGTCCT CCGAAAGCTC
GGTTGCAACT TAACTGCTCA AAGAGATAAT GGCAGATTCT TTTTCCTTCC TATGCTTATG TTTCAGTGTC CAGGGGAAGG
AAAACCCAAT CATGATGGGC TTGCTTCTGT GTTTGAGCAA ATTGAAAGAG TGATCACTCT GTTACATCAA GACAAGAAAT
CCATCTCTAT CATTATAGAT GATATATCTT TTCTTGAAGT TGCTGCTAAT GGTTCTTCAG ATGATGTTTT AAACTTGCTG
CATTATTGCC ATACGTTAAC ATCAGAATAT GGTTGTGCAT TGATTGCACT TGATCATAAA GATATTTATT TGAATGGAGA
CAGGACTGCT GTTATCTTAG AGATGGAGTA CCGTGCTGAC ATTTTGGTCA AGGCTGAACC ATTGGCCACT GGTTTAGCAA
AAGATGTGCA TGGTCAGTTG ATGGTGTTAA ATAAGGAAAC ACAACATCAG CATGGAATTA CAGCCATTAA GAGTTACAAT
TTTCACTTCA AGATCAAGGA AAATGGCATC GAGTGCTTTT ATCCTGGTAC AAAAATCCAA TGA

>Vigan.04G197500.01
MEQKNWNLLD ESLGLHINDD AKPWPLCGRF VLVEDCVDTS AAFVLHHILK RSFSSHPSSA VLFLAFSHPF SHYDRVLRKL
GCNLTAQRDN GRFFFLPMLM FQCPGEGKPN HDGLASVFEQ IERVITLLHQ DKKSISIIID DISFLEVAAN GSSDDVLNLL
HYCHTLTSEY GCALIALDHK DIYLNGDRTA VILEMEYRAD ILVKAEPLAT GLAKDVHGQL MVLNKETQHQ HGITAIKSYN
FHFKIKENGI ECFYPGTKIQ *