GBrowse Details

Vigan.04G170400.01

Basic Information:
Name: Vigan.04G170400.01
Multiple alignment
Variant Information
Position: Chr04:24216170..24218210 (- strand)
Length: 2041
Functional Information:
Description: Similar to Uncharacterized protein. [I1KZ93, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: ribosome (GO:0005840)
Cellular Component: large ribosomal subunit (GO:0015934)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L13, eukaryotic/archaeal (IPR005755)
Ribosomal protein L13 (IPR005822)
Ribosomal protein L13, conserved site (IPR023563)
Ribosomal protein L13 domain (IPR023564)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:93.28,187.28,138.93,73.24,207.51,506 .56,230.00,109.52
Arabidopsis thaliana homolog: AT5G48760.1
Automatic updates:
Name: NM_001248173 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499978 (LOC100499978), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249273 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527190 (LOC100527190), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001289209 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 60S ribosomal protein L13a-4-like (LOC100813340), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:24216170..24216644 (- strand)
Length: 475
Type: three_prime_UTR
Position: Chr04:24216645..24216788 (- strand)
Length: 144
Type: CDS
Position: Chr04:24216983..24217070 (- strand)
Length: 88
Type: CDS
Position: Chr04:24217162..24217278 (- strand)
Length: 117
Type: CDS
Position: Chr04:24217738..24218009 (- strand)
Length: 272
Type: CDS
Position: Chr04:24218010..24218210 (- strand)
Length: 201
Type: five_prime_UTR

>Vigan.04G170400.01 class=Sequence position=Chr04:24216170..24218210 (- strand)
CTTGGTTTAC AGTTCAACGC AAGCGTTAGG CCCATTGGGT GAAAAGCCCA ACCCACACTC TCCGGCAACA AAAAACCCTA
ATCCAGTAAT CCCTCTGCGC CTCCCTCTTA TACTCAAAAC CTTAGCAGAG ACACACAGCA GAATAGACCA AAGAACCAAC
CTTCAGTGTT GTGTGGGAGA GAGAAAGAGA GAGAGAAAAA AATGGTTTCA GGGTCAGGGA TCTGCGCGAA GAGGGTGGTG
GTGGACGCTC GCCACCACAT GCTTGGAAGG TTGGCCTCGA TCGTGGCCAA GGAACTTCTC AATGGGCAGA AGGTGGTGGT
GGTCAGGTGC GAGGAGATTT GCATCTCCGG CGGGCTCGTG AGGCAGAAGA TGAAGTACAT GCGCTTTCTA CGCAAGCGCA
TGAACACCAA ACCCTCTCAC GGCCCCATTC ACTTCCGGGC TCCCGCTAAG ATCTTCTGGC GCACCGTTCG CGGGTTAGTG
TTAATGCCCT TTTGTCCCCT TTGAAAAAAT TCATTAGCCG ACACTTCTTT AATGTTTGCA ATTGGTATGA TTGTGTATAA
TCTAAAGTTC GAATTCTGAA AGTAAGTTTT TTTTTCAACG AAATTATTAA GGTCTTCGTT AATTGACGTG GATTGATGTT
TGCAAATGAA AATTTATGTT TTCAGAATGA ATGTAGTGTT TGAATTTTAA TTTTGTTTAA TGGGGTTAAG TGGTCCATGT
ATTCAACCTT TATTAGATGG ATAATGTTTG GTGTTTATGG GATTAATGTG TAATTTTTGC AATGATAGAT ATGTTTCAAT
GAAGGATAGT GGGATAGGGT TTTGATGTTT TGGGATTACT GTGTAATTTT TGCAATATTA GGGTTTGCGA TGAAGGATAT
TGATGTTGTC AATTCGTGGG AAGTTTTTTC TGAAATGGGT GTTTGTTTGC AGGATGATTC CTCATAAGAC TAAGCGTGGG
GAAGCTGCTC TTGATCGATT GAAGGTTTAT GAGGGTATTC CTCCTCCATA CGACAAGACT AAGAGGATGG TTGTCCCTGA
TGCTCTCAAG TGAGTTTTAT TTAGTTTTTT AGAGATTTTC TGTCTTGATG TTATTGTTGT TGTTATTGTG AATGCTGAGC
TGGGGAATGG ATTTGCTTAG GGTGTTGAGG CTTCAGAAGG GGCACAAATA CTGTCTTCTA GGCAAATTGT CATCTGAGGT
TGGATGGAAC TATTATGATA CCATCAGGGT GAGTTCTTAC CTTCTGTTAT TTTTGTACTT GTAATTTCCT TATTTCCTTG
TGAATTGTCA AGAGAAATCA CTGGGTGAAT TATTTACGAC AATTTTGGTC TCAGTGTAGC ATCAAGGGAA CTAGACTGAG
GCTCTGCCAC TTTTGGAAAT TTTCTCTTAT TCTGTGGTTT CTAATTGCTA TGTTGCTAAC AGGAACTGGA AAAGAAGAGG
AAGGAGAGGG CACAGTTGTC TTATGAGAGG AAGAAGCAGC TTGCCAAATT GAGGGTGAAA GCTGAAAAGG TTGCAGAGGA
GAAGCTCGGT TCCCAAATTG AAATCCTTGC TCCCGTTAAG TACTGAGTAG GTGTATGCTA GTTAGTGTTT TGAAGTTTTG
GTTTGAGGTG TATACCCAAT TGAACTCCAT TTCAATTTTG CTGGTCATCT TGGACTCTAG ATATGACAAT CTTGGAAGTT
GTTTTACTTT GTTTGCTTTA GAATTTTTAT GTCATCCGAT TAAGTTCTAT TACATAATTG TTTTTTTTGT GTTGTCTCTA
TGGTGTGATA TATTGTGGCA TTTTAATCTT ACCTCCTGCA TGAAGATGGA CTAAATAAAA TATTTTACCT TCAGTTTTAT
GCTCAACAAG ATACATCGTT TTCTAGTATT TGTAATTGTG TAATTTGATA GAGATCAAGT GGGAATCTGA AATGATGTAA
TATGATATCA AAGGGGGACA CAGACACCAC CAACTTGGTG TCATTCGACA TGTAAACAGG TTCGATCTCA AAGGTATTAT
ATCCAAAGAA AAGCTACAAA TGAACATGTG ATATAAAAAA T

>Vigan.04G170400.01
CTTGGTTTAC AGTTCAACGC AAGCGTTAGG CCCATTGGGT GAAAAGCCCA ACCCACACTC TCCGGCAACA AAAAACCCTA
ATCCAGTAAT CCCTCTGCGC CTCCCTCTTA TACTCAAAAC CTTAGCAGAG ACACACAGCA GAATAGACCA AAGAACCAAC
CTTCAGTGTT GTGTGGGAGA GAGAAAGAGA GAGAGAAAAA AATGGTTTCA GGGTCAGGGA TCTGCGCGAA GAGGGTGGTG
GTGGACGCTC GCCACCACAT GCTTGGAAGG TTGGCCTCGA TCGTGGCCAA GGAACTTCTC AATGGGCAGA AGGTGGTGGT
GGTCAGGTGC GAGGAGATTT GCATCTCCGG CGGGCTCGTG AGGCAGAAGA TGAAGTACAT GCGCTTTCTA CGCAAGCGCA
TGAACACCAA ACCCTCTCAC GGCCCCATTC ACTTCCGGGC TCCCGCTAAG ATCTTCTGGC GCACCGTTCG CGGGATGATT
CCTCATAAGA CTAAGCGTGG GGAAGCTGCT CTTGATCGAT TGAAGGTTTA TGAGGGTATT CCTCCTCCAT ACGACAAGAC
TAAGAGGATG GTTGTCCCTG ATGCTCTCAA GGTGTTGAGG CTTCAGAAGG GGCACAAATA CTGTCTTCTA GGCAAATTGT
CATCTGAGGT TGGATGGAAC TATTATGATA CCATCAGGGA ACTGGAAAAG AAGAGGAAGG AGAGGGCACA GTTGTCTTAT
GAGAGGAAGA AGCAGCTTGC CAAATTGAGG GTGAAAGCTG AAAAGGTTGC AGAGGAGAAG CTCGGTTCCC AAATTGAAAT
CCTTGCTCCC GTTAAGTACT GAGTAGGTGT ATGCTAGTTA GTGTTTTGAA GTTTTGGTTT GAGGTGTATA CCCAATTGAA
CTCCATTTCA ATTTTGCTGG TCATCTTGGA CTCTAGATAT GACAATCTTG GAAGTTGTTT TACTTTGTTT GCTTTAGAAT
TTTTATGTCA TCCGATTAAG TTCTATTACA TAATTGTTTT TTTTGTGTTG TCTCTATGGT GTGATATATT GTGGCATTTT
AATCTTACCT CCTGCATGAA GATGGACTAA ATAAAATATT TTACCTTCAG TTTTATGCTC AACAAGATAC ATCGTTTTCT
AGTATTTGTA ATTGTGTAAT TTGATAGAGA TCAAGTGGGA ATCTGAAATG ATGTAATATG ATATCAAAGG GGGACACAGA
CACCACCAAC TTGGTGTCAT TCGACATGTA AACAGGTTCG ATCTCAAAGG TATTATATCC AAAGAAAAGC TACAAATGAA
CATGTGATAT AAAAAAT

>Vigan.04G170400.01
ATGGTTTCAG GGTCAGGGAT CTGCGCGAAG AGGGTGGTGG TGGACGCTCG CCACCACATG CTTGGAAGGT TGGCCTCGAT
CGTGGCCAAG GAACTTCTCA ATGGGCAGAA GGTGGTGGTG GTCAGGTGCG AGGAGATTTG CATCTCCGGC GGGCTCGTGA
GGCAGAAGAT GAAGTACATG CGCTTTCTAC GCAAGCGCAT GAACACCAAA CCCTCTCACG GCCCCATTCA CTTCCGGGCT
CCCGCTAAGA TCTTCTGGCG CACCGTTCGC GGGATGATTC CTCATAAGAC TAAGCGTGGG GAAGCTGCTC TTGATCGATT
GAAGGTTTAT GAGGGTATTC CTCCTCCATA CGACAAGACT AAGAGGATGG TTGTCCCTGA TGCTCTCAAG GTGTTGAGGC
TTCAGAAGGG GCACAAATAC TGTCTTCTAG GCAAATTGTC ATCTGAGGTT GGATGGAACT ATTATGATAC CATCAGGGAA
CTGGAAAAGA AGAGGAAGGA GAGGGCACAG TTGTCTTATG AGAGGAAGAA GCAGCTTGCC AAATTGAGGG TGAAAGCTGA
AAAGGTTGCA GAGGAGAAGC TCGGTTCCCA AATTGAAATC CTTGCTCCCG TTAAGTACTG A

>Vigan.04G170400.01
MVSGSGICAK RVVVDARHHM LGRLASIVAK ELLNGQKVVV VRCEEICISG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA
PAKIFWRTVR GMIPHKTKRG EAALDRLKVY EGIPPPYDKT KRMVVPDALK VLRLQKGHKY CLLGKLSSEV GWNYYDTIRE
LEKKRKERAQ LSYERKKQLA KLRVKAEKVA EEKLGSQIEI LAPVKY*