GBrowse Details

Vigan.04G167300.01

Basic Information:
Name: Vigan.04G167300.01
Multiple alignment
Variant Information
Position: Chr04:23591181..23595207 (+ strand)
Length: 4027
Functional Information:
Description: Similar to ER lumen protein retaining receptor. [V7B459, Phaseolus vulgaris]
GO: Biological Process: protein retention in ER lumen (GO:0006621)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: ER retention sequence binding (GO:0046923)
InterPro: ER lumen protein retaining receptor (IPR000133)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.44,16.67,31.82,22.12,32.82,23.26,41.01,24.77
Arabidopsis thaliana homolog: AT3G25040.1
Automatic updates:
Name: NM_001250817 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527553 (LOC100527553), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254600 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ER lumen protein retaining receptor-like (LOC100780011), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:23591181..23591463 (+ strand)
Length: 283
Type: five_prime_UTR
Position: Chr04:23591464..23591554 (+ strand)
Length: 91
Type: CDS
Position: Chr04:23592746..23593011 (+ strand)
Length: 266
Type: CDS
Position: Chr04:23593151..23593266 (+ strand)
Length: 116
Type: CDS
Position: Chr04:23593866..23593939 (+ strand)
Length: 74
Type: CDS
Position: Chr04:23594859..23594922 (+ strand)
Length: 64
Type: CDS
Position: Chr04:23595011..23595047 (+ strand)
Length: 37
Type: CDS
Position: Chr04:23595048..23595207 (+ strand)
Length: 160
Type: three_prime_UTR

>Vigan.04G167300.01 class=Sequence position=Chr04:23591181..23595207 (+ strand)
GCACCATTTT TCTTACATAG ATTAAAGCTA AATTAAGACA TATTTAGTCA TGAAGAGAGT TGAAAATATT ATGAAATAAA
ACTCCTGAAA TAAAAATAAT TAAATAAAAA GAGAGAAAGG AAGCAAGAGT AAAAGCGACT CTCACCCGAG CCATGTTCTG
AAGTCTTCCC TGCTTGTATG CAACGGCCAG ACACATTTTA GTCGCTCTGC GCTCCTCCGC CTGAAACCGA TTGTTGCAGG
ACAAAGATCC GGGTCGACCC GCCGTAGATC CGATCCAACA AACATGAATA TTTTCAGGTT AGCTGGGGAC ATGACCCATT
TGGCCAGCGT CCTCGTCCTC CTCCTCAAGA TCCACACCAT CAAGTCCTGC GCCGGTCGGT ACCCACCCTC TCTCCCATCT
CAACATTCTC CCTCTCTTTT TCTTCGCTTG ATACCTAGTA GATTTGGAAT AGAATAATAG CTGTTGGTCA AAGGTGCGAA
ATTTTTATAT GGGGTTGTAT GATTTTATGC TTTACTGTTA TGTTTTTGTG GCGTTGATTT TGGGGATGGG AATGTTCGGA
ATTCCTGTGG GTTGGCAAAG GAGTTTGGAG GTAAGGTTTT GAAGAGATGA GTGTAGGATT AGGAATGATG TGTGTGGAAT
TATGTGATTC TTGTTCTTCT CATTGTAATG CCGATTGAGG GTTATCGTTG TTCCTTTGTC TTGTGGGACT TGGGCTGGTC
TCTCATAATA GGCCGAACCC AGGTTCGAAT CTCTCATTTG GTGTCTGATA GTATGTAGGA TTGCCTTCAG AGAAGGATAT
CTACCTTGGG ACTTGGGCTA CTCCTCCCCA ATGTGTGGAA TTATGGTTCG AATCTCTGCC GAAAGAAATG CCGATGATTG
TGTCTCGAAT AGGATTGTTT CTAAAGAAAT ATATCCTTAG GGAAGCTAAG AAAAAAAGTC TGTGGACTTG GGCATTGCTT
TCAAATGATT GTTGTTGTGG TATGATAAAT TTGATACAAT AGTTTTCAGT TTACTGGTTC CCCTCATGTT GGGTTCTTTG
GTGTTTTTTA TGATTGGGGG AGTTTGTGGT GCCTTGTTTT TTGGACCATG TCTTTCTTCT CAATGTACAG AACTATTATA
CATATTTTAT CGTGAGTAAG GAATCATCTT GCGTTTTGTC CCCCTTCTTT TAAGCTAAGT AAATGGTTGG GGATCAGTCA
TAAGTATCTG TCTGTTTTCT TGCTGTTTGT GTTTCTGTTG TGCTAAATAG AAATTAATAG GCTAAACCAA AGCCTAACAT
GTATATAAAT ATCCTTTTGT GCTGCATCAA TATGTGTTTT TCCCTCCTAT GATTGTGTTT TGATGTAAGA GAAGATCAAA
AACTAGTTTA TCCATTACCA GTTGAAGGAG AAGGGAGTAA AAATGAGCAA AAGACCTATT CATTAAAGCA GTATAGACCT
ACATAAATGA ACTGTATTTT CTCATTTTTC ATATTCAGGC CATTGATTGA CTGTGGTTTA GTTTTAAAAA TACCTTTCAT
ATATCTTTTT GACTCTGACT TCGAATGCAT CTGATTTGTG TGCAGGTGTC TCATTGAAGA CTCAAGAACT CTATGCACTT
GTTTTTGCTT GTCGCTACTT AGATATCTTT ACTAATTTTG TATCTCTCTA TAATACTGTT ATGAAGTTGA TATTCTTGGG
AAGCTCGTTT TCTATAGTAT GGTACATGAG GTATCACAAG GTTGTTCGTA GATCGTATGA CAAAGATCAA GATACCTTTC
GCCATTACTT TCTTGTATTG CCCTGCTTAG TATTGGCCCT ATTAATCAAT GAGAAATTCA CATTTAAGGA GGTTAGTATG
CATCTTTCGT TATATGCTGT CTATACTATG GTAACTGTTG TGTTACTATT GACATGTTCT TAGACTGTTC TCAAGATCTG
ATTGTGCCAC TTTTGCTTAC TTTCTGAAAC TACACTTAAA TATGTTATAG GTGATGTGGA CATTTTCCCT TTATTTGGAA
GCTGTTGCTA TACTTCCTCA ACTAGTACTT TTACAGAGAA CTAGAAATAT TGACAATTTG ACTGGACAAT ATGTGTTTCT
TCTTGGGTAA GATATTGTGC TCTATCGAAT TTTGAACATT ATTATAAATT TCCATGAGTC CTTTGGTTCA TGTTATTGCA
TTTGTGTTGG AAACGGAATA ACAGCTGTTA TTTGCTTAAG GGATTTCAGC TTTTGATCAT TAAAATCAAC ACTCTTAAAT
GTTGATTAAT GTTGAGAGAA TTGTGTAGTA TTTCATCTGA TGTGTGGTAC AATTTCCAAA ACGTGCTTCT AACTCATGTA
GAGCTGATGC AGACAAAATG GAGTAACGAA AATTATGAGT TTGCAATAGT GTTCCTGGGC CAACTTTTCC ATTGGCTTCT
TTAGTAGCGT GCAATTAATT TTGTCTTCTA CCATGACTAT GAGTTAAGAC TTAGAAGTTT TAATACCTGG GAGAACTAAG
TTTTTACTGG TGAATGTGGT CCCACAAATC TTGTCATTTG TTTCAGTGGT TCATCTCAGC TTTATATATT TCCCTGTGAT
TTTCTCATGA TGTGATATGT ATTGAATCAT TCTTTTGACT TGTTCAACTC ATTTGCAATA TTTATGTTTG AAGCCCTACA
ATCATAAGAT TAATATTTAT AATATTCATG TCTGGTTAAA TGCAGTGCAT ACAGAGGACT ATACATTCTC AACTGGATCT
ATCGCTACTT TACTGAGCCC CACTTTGTCC ATTGGATAAG TATGACTCTT AATTTTGTTT TATGCTTACT ACTGCTTTTT
AAGTAACTAC TCTTTGATAT TCAGTACGAT ACTATGTCCT GTGGTACCTT TTCATTGCCT AGTATTTGAA ATTCTCAATA
CTTGAGATGC ATTTGTAGCG GTGTTCTTTG ATGTTCATTT CCTTGTTACA AAAAACTGTT AAACAATCTA GGTTGTGCAA
GCCTTTTAAA ATATTTATCA AACCATTGCT GCATGGAATC CATTACTGAA AAACTTTTAC TTTGTTCATT TCTATCAAAA
TATTATTTCT TATGTGTGTG TGGTTTTATA AATAACAATT TTCATGAGGT AAGTTTCTGT TGCTCCACAT CTTTGAAGCA
TTGATTTGGT GCATCCCCTT ATTGCTTTTG ATTTTCAAGC AGCATCTTCA ATGTTTTAAA TAATGTTCAA TATTGATACT
TCTGATTCAT CATATAGGGG TATCAATCAG TACAAATTTT GGTACTGCTT ATTTTTCTAA AAGGAATAGG AATTGCAAGC
TTAGATTATT GGTCATTTAT TTGTACCTGG GTTATAAACA AGAGGATGAA AAAGTTATGA CATTTCTTTT TGCTTTTCCC
CTTGTTGGAC AAAAGTAATG ATTGTCTTTA CAAATATTAA ATATTCATTA CAAATAAACT TTTCGCCAGA AATTTAACAT
GTAAGCACAG CTATAGAAGT AGGTTTAATT GCTTGTCATG ACTTGTTGCA ACACAGAACA TGAGAAAAAC ATTGTCCTAA
TAACACCCTA TCAATTTTTA GACAAAGCAA TAAGCAAGTT TCTCTCCCTC TTGCCAAACA CTAAACTTTG CCCGCACAAA
AGAAAGATAA AAGGGGTTAC CAGAAAATTA TTATATATTC TAAAAGTGTT CCTGAATCCT TTTAATGTCT TTTTGCAGCA
TGGATTTCTG GCCTTGTTCA AACACTGCTA TATGCTGATT TCTTCTATTA CTATTACCAA AGGTTAATTG ACCTACTTTT
CAGTTCCATT TGTTTATGTT AAATACCTTG TTTACCTGAG TTTAAAGCAT TTTAAAATTG TGCCGTGCAG CTGGAAGAAC
AACCAAAAGC TTCATTTGCC AGCGTGAGTG TATTCTTCCG TTCTTGAAAA ACAAGGGCCT ATATGGACAA TTAACAGTGA
CAATCCACAT ATTTGTCTGG ACAGTGGTTT CTGATTTACA ATTCCCTATT TGTTCGTTCT TGCCACCTCA AAATACTTCT
GTACTTATTA CTAGGAAAAT ATTATAT

>Vigan.04G167300.01
GCACCATTTT TCTTACATAG ATTAAAGCTA AATTAAGACA TATTTAGTCA TGAAGAGAGT TGAAAATATT ATGAAATAAA
ACTCCTGAAA TAAAAATAAT TAAATAAAAA GAGAGAAAGG AAGCAAGAGT AAAAGCGACT CTCACCCGAG CCATGTTCTG
AAGTCTTCCC TGCTTGTATG CAACGGCCAG ACACATTTTA GTCGCTCTGC GCTCCTCCGC CTGAAACCGA TTGTTGCAGG
ACAAAGATCC GGGTCGACCC GCCGTAGATC CGATCCAACA AACATGAATA TTTTCAGGTT AGCTGGGGAC ATGACCCATT
TGGCCAGCGT CCTCGTCCTC CTCCTCAAGA TCCACACCAT CAAGTCCTGC GCCGGTGTCT CATTGAAGAC TCAAGAACTC
TATGCACTTG TTTTTGCTTG TCGCTACTTA GATATCTTTA CTAATTTTGT ATCTCTCTAT AATACTGTTA TGAAGTTGAT
ATTCTTGGGA AGCTCGTTTT CTATAGTATG GTACATGAGG TATCACAAGG TTGTTCGTAG ATCGTATGAC AAAGATCAAG
ATACCTTTCG CCATTACTTT CTTGTATTGC CCTGCTTAGT ATTGGCCCTA TTAATCAATG AGAAATTCAC ATTTAAGGAG
GTGATGTGGA CATTTTCCCT TTATTTGGAA GCTGTTGCTA TACTTCCTCA ACTAGTACTT TTACAGAGAA CTAGAAATAT
TGACAATTTG ACTGGACAAT ATGTGTTTCT TCTTGGTGCA TACAGAGGAC TATACATTCT CAACTGGATC TATCGCTACT
TTACTGAGCC CCACTTTGTC CATTGGATAA CATGGATTTC TGGCCTTGTT CAAACACTGC TATATGCTGA TTTCTTCTAT
TACTATTACC AAAGCTGGAA GAACAACCAA AAGCTTCATT TGCCAGCGTG AGTGTATTCT TCCGTTCTTG AAAAACAAGG
GCCTATATGG ACAATTAACA GTGACAATCC ACATATTTGT CTGGACAGTG GTTTCTGATT TACAATTCCC TATTTGTTCG
TTCTTGCCAC CTCAAAATAC TTCTGTACTT ATTACTAGGA AAATATTATA T

>Vigan.04G167300.01
ATGAATATTT TCAGGTTAGC TGGGGACATG ACCCATTTGG CCAGCGTCCT CGTCCTCCTC CTCAAGATCC ACACCATCAA
GTCCTGCGCC GGTGTCTCAT TGAAGACTCA AGAACTCTAT GCACTTGTTT TTGCTTGTCG CTACTTAGAT ATCTTTACTA
ATTTTGTATC TCTCTATAAT ACTGTTATGA AGTTGATATT CTTGGGAAGC TCGTTTTCTA TAGTATGGTA CATGAGGTAT
CACAAGGTTG TTCGTAGATC GTATGACAAA GATCAAGATA CCTTTCGCCA TTACTTTCTT GTATTGCCCT GCTTAGTATT
GGCCCTATTA ATCAATGAGA AATTCACATT TAAGGAGGTG ATGTGGACAT TTTCCCTTTA TTTGGAAGCT GTTGCTATAC
TTCCTCAACT AGTACTTTTA CAGAGAACTA GAAATATTGA CAATTTGACT GGACAATATG TGTTTCTTCT TGGTGCATAC
AGAGGACTAT ACATTCTCAA CTGGATCTAT CGCTACTTTA CTGAGCCCCA CTTTGTCCAT TGGATAACAT GGATTTCTGG
CCTTGTTCAA ACACTGCTAT ATGCTGATTT CTTCTATTAC TATTACCAAA GCTGGAAGAA CAACCAAAAG CTTCATTTGC
CAGCGTGA

>Vigan.04G167300.01
MNIFRLAGDM THLASVLVLL LKIHTIKSCA GVSLKTQELY ALVFACRYLD IFTNFVSLYN TVMKLIFLGS SFSIVWYMRY
HKVVRRSYDK DQDTFRHYFL VLPCLVLALL INEKFTFKEV MWTFSLYLEA VAILPQLVLL QRTRNIDNLT GQYVFLLGAY
RGLYILNWIY RYFTEPHFVH WITWISGLVQ TLLYADFFYY YYQSWKNNQK LHLPA*