GBrowse Details

Vigan.04G166700.01

Basic Information:
Name: Vigan.04G166700.01
Multiple alignment
Variant Information
Position: Chr04:23420799..23423254 (- strand)
Length: 2456
Functional Information:
Description: Similar to Beta-amyrin 24-hydroxylase. [Q9XHC6, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
Molecular Function: heme binding (GO:0020037)
InterPro: Cytochrome P450 (IPR001128)
Cytochrome P450, E-class, group I (IPR002401)
Cytochrome P450, conserved site (IPR017972)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.56,3.88,171.60,39.80,38.01,217.75,47.67,17.37
Automatic updates:
Name: NM_001249225 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max beta-amyrin and sophoradiol 24-hydroxylase (CYP93E1), mRNA.
PubMed ID: 16478469 NCBI(pubmed)
10375412 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:23420799..23421058 (- strand)
Length: 260
Type: three_prime_UTR
Position: Chr04:23421059..23421694 (- strand)
Length: 636
Type: CDS
Position: Chr04:23422242..23423138 (- strand)
Length: 897
Type: CDS
Position: Chr04:23423139..23423254 (- strand)
Length: 116
Type: five_prime_UTR

>Vigan.04G166700.01 class=Sequence position=Chr04:23420799..23423254 (- strand)
GATTGATACC ACCTTTCATG TTGCTCATGC GGCAGCTTCT CTATATAAGA GCCAACGTAA TCTAACTCGT TAACCTCAAA
CACACTGTTT TTGCCTAGAA ACTAAACAGC ACAGCCATGA TAGACATACA AGGTTGCCTT GCTCTATTCT TCCTGTGGCT
CATTTCCACC ATTTTTATTC GTTCTGTCTT CAAAAAATCA CAGAAACTCC CACCTGGCCC TCCCATCTCA ATACCCTTAC
TAGGACACGC GCCCTATCTC CGTTCGGTGC TTCACCAAGC ACTGTACAAA CTCTCCCTAC GCTATGGTCC CTTGATTCAT
ATCAAGATCG GGTACAAAAA CATCGTTGTA GCGTCGTCTG CGGAGACAGC CAAAGAGATC CTTAAAACGT CCGAAGAGGC
GTTCTGCAAC CGCCCCTTAA TGATTGCGAG CGACAGTTTA ACGTACGGCG CCGCCGACTA CTTTTTCATT CCGTACGGGA
CGTACTGGCG CTTCCTGAAG AAGCTTTGCA TGACGGAGCT TCTGAGCGGG AAGACTCTGG AGCATTTTGT GGGCATTCGC
GAGAGCGAGG TGGAAGCGTT TTTGAAGCGG ATGTTGGAGA TGTCGGCGAC GGGGAAGGAG GTGGTGATGA GGCAAGAGCT
GATAACGCAC ACGAATAACA TTATCACGAG AATGATCATG GGGAAGAAGA GTAGTGGTGC GGATGATTTT GTGGCGCAGT
TGAGGAAGGT GGTGAGGGAA GTGGGGGAGT TGCTGGGGGC GTTCAACTTG GGAGATATTT TGGGGTTTGC GAAGCCTTTT
GATCTGCAGG GGTATGGGAA GAAGAACATG GAAACGCACC GCAAGGTGGA TACGATGATG GAGAAGGTGC TGAAGGAGCA
CGAAGAGGCG AGGGCCAAAG CAGGTGCTGA CAGTGATAGG AAGAAAGATC TCTTCGACAT TCTCTTGAAC CTCATTGAAG
CTGATGGTGC TGACAATAAA CTCACAAGGG AAAGTGCCAA AGCCTTTGCT CTGGTCAGTG AATGAAAACT CATACTTTTT
TACATATAAA TTTTTATCTT TATTTCATAT ATATTTTTTA TATTTTAAAA AGATATAAAA ATCTTCTTTT TATAATTATT
TTATTTTTAT AATATATATA TTTAGGATAA TGATACTTTA ACTTTTTTTT TTGAAACATT TTAATTTTAA TTTTTTTTTA
AAAATATTTT AATATTATCT TTGTGTTATA TGTGATTGAT CCATGTTGAT GTTTATGATT ATTATTATTT ATGTTTATGA
TTATTATTAT TAATTGTAAA GTAATTTTGC ACCAGTATCA TTATCCATAT ATTTATTATC ATATTTCCAT TTGAAAAAAA
ATAGTTTACA CTCATTATAT ATTATTATCT TGTTATTTTT TATTTTTCCA TTACACAAAA GTATGTGTAA AAATAATATG
GATCATTACA TGAGTAACAA GCAATAAAAC CTGAAGACAT TATCACAGAG GTTGTGTTCG ATGTTTTATT TGAACTATGG
AACTGAACCC TTAACCTGAG AAAGCTTAAC GGTTCCACAG GACATGTTCA TCGCCGGCAC AAACGGACCC GCTAGTGTTC
TGGAATGGTC CCTCGCGGAG CTGGTGAGAA ACCCGGAGGT GTTGAAGAAG GCGAGAGAGG AGATAGAGTG TGTGGTGGGA
AAGGAGAGGC TGGTGAAGGA GTCAGACATT CCTAACCTCC CTTATCTGCA AGCAGTGGTG AAGGAGACTC TGAGAATGCA
CCCTCCGACC CCAATCTTCG CGCGAGAAGC CATGCGCACG TGCCAGGTTG ACGGCTACGA CATTCCTGCG CACTCCACCA
TCATGATCAG CACGTGGGCC ATCGGCAGAG ACCCCAACTA CTGGGACAAC CCGCTGGAGT ACAACCCTGA GAGGTTCTTG
GTTTCCGATG AGCTTGGTAA AGGCAAAATC GACGTGAGGG GACAGTACTA CCAGCTTCTA CCCTTCGGAA GCGGACGAAG
AAGCTGCCCC GGAGCCTCAC TTGCGTTACT CGTCATGCAA GCCACACTCG CGAGTTTGAT ACAGTGCTTC GATTGGGTGG
TGAATGATGG GAAGAGTCAC GACATTGACA TGACGGAGGA GGGAAGAGTG ACGGTGTTTT TGGCGAAGCC GCTTACGTGC
AAGCCTGTTC CGCGGTTCAC TCCCTTCGCT GCATGAACAG TGATGATGTC TGCAACTCTG TTTTCTTTGC CACTTTAAGG
TTTTGTCGTT GTTTTGGGAA ATGTTTGGTG GGCTTAATGG AATATGTTGT CGGTTAATGG CAGCTGTTCT TATTCGGCTT
TCGTGCTCCA AATATATTAT AAACTTATCA TTTCGCATAA TTTCATGTAC AAAAATAATA TTTCCCGATG TGAAGATCTG
TTACTTAAAA TATTTATCGT TACTATAATG TGTAAGACTC TCAGGATATA ATATAG

>Vigan.04G166700.01
GATTGATACC ACCTTTCATG TTGCTCATGC GGCAGCTTCT CTATATAAGA GCCAACGTAA TCTAACTCGT TAACCTCAAA
CACACTGTTT TTGCCTAGAA ACTAAACAGC ACAGCCATGA TAGACATACA AGGTTGCCTT GCTCTATTCT TCCTGTGGCT
CATTTCCACC ATTTTTATTC GTTCTGTCTT CAAAAAATCA CAGAAACTCC CACCTGGCCC TCCCATCTCA ATACCCTTAC
TAGGACACGC GCCCTATCTC CGTTCGGTGC TTCACCAAGC ACTGTACAAA CTCTCCCTAC GCTATGGTCC CTTGATTCAT
ATCAAGATCG GGTACAAAAA CATCGTTGTA GCGTCGTCTG CGGAGACAGC CAAAGAGATC CTTAAAACGT CCGAAGAGGC
GTTCTGCAAC CGCCCCTTAA TGATTGCGAG CGACAGTTTA ACGTACGGCG CCGCCGACTA CTTTTTCATT CCGTACGGGA
CGTACTGGCG CTTCCTGAAG AAGCTTTGCA TGACGGAGCT TCTGAGCGGG AAGACTCTGG AGCATTTTGT GGGCATTCGC
GAGAGCGAGG TGGAAGCGTT TTTGAAGCGG ATGTTGGAGA TGTCGGCGAC GGGGAAGGAG GTGGTGATGA GGCAAGAGCT
GATAACGCAC ACGAATAACA TTATCACGAG AATGATCATG GGGAAGAAGA GTAGTGGTGC GGATGATTTT GTGGCGCAGT
TGAGGAAGGT GGTGAGGGAA GTGGGGGAGT TGCTGGGGGC GTTCAACTTG GGAGATATTT TGGGGTTTGC GAAGCCTTTT
GATCTGCAGG GGTATGGGAA GAAGAACATG GAAACGCACC GCAAGGTGGA TACGATGATG GAGAAGGTGC TGAAGGAGCA
CGAAGAGGCG AGGGCCAAAG CAGGTGCTGA CAGTGATAGG AAGAAAGATC TCTTCGACAT TCTCTTGAAC CTCATTGAAG
CTGATGGTGC TGACAATAAA CTCACAAGGG AAAGTGCCAA AGCCTTTGCT CTGGACATGT TCATCGCCGG CACAAACGGA
CCCGCTAGTG TTCTGGAATG GTCCCTCGCG GAGCTGGTGA GAAACCCGGA GGTGTTGAAG AAGGCGAGAG AGGAGATAGA
GTGTGTGGTG GGAAAGGAGA GGCTGGTGAA GGAGTCAGAC ATTCCTAACC TCCCTTATCT GCAAGCAGTG GTGAAGGAGA
CTCTGAGAAT GCACCCTCCG ACCCCAATCT TCGCGCGAGA AGCCATGCGC ACGTGCCAGG TTGACGGCTA CGACATTCCT
GCGCACTCCA CCATCATGAT CAGCACGTGG GCCATCGGCA GAGACCCCAA CTACTGGGAC AACCCGCTGG AGTACAACCC
TGAGAGGTTC TTGGTTTCCG ATGAGCTTGG TAAAGGCAAA ATCGACGTGA GGGGACAGTA CTACCAGCTT CTACCCTTCG
GAAGCGGACG AAGAAGCTGC CCCGGAGCCT CACTTGCGTT ACTCGTCATG CAAGCCACAC TCGCGAGTTT GATACAGTGC
TTCGATTGGG TGGTGAATGA TGGGAAGAGT CACGACATTG ACATGACGGA GGAGGGAAGA GTGACGGTGT TTTTGGCGAA
GCCGCTTACG TGCAAGCCTG TTCCGCGGTT CACTCCCTTC GCTGCATGAA CAGTGATGAT GTCTGCAACT CTGTTTTCTT
TGCCACTTTA AGGTTTTGTC GTTGTTTTGG GAAATGTTTG GTGGGCTTAA TGGAATATGT TGTCGGTTAA TGGCAGCTGT
TCTTATTCGG CTTTCGTGCT CCAAATATAT TATAAACTTA TCATTTCGCA TAATTTCATG TACAAAAATA ATATTTCCCG
ATGTGAAGAT CTGTTACTTA AAATATTTAT CGTTACTATA ATGTGTAAGA CTCTCAGGAT ATAATATAG

>Vigan.04G166700.01
ATGATAGACA TACAAGGTTG CCTTGCTCTA TTCTTCCTGT GGCTCATTTC CACCATTTTT ATTCGTTCTG TCTTCAAAAA
ATCACAGAAA CTCCCACCTG GCCCTCCCAT CTCAATACCC TTACTAGGAC ACGCGCCCTA TCTCCGTTCG GTGCTTCACC
AAGCACTGTA CAAACTCTCC CTACGCTATG GTCCCTTGAT TCATATCAAG ATCGGGTACA AAAACATCGT TGTAGCGTCG
TCTGCGGAGA CAGCCAAAGA GATCCTTAAA ACGTCCGAAG AGGCGTTCTG CAACCGCCCC TTAATGATTG CGAGCGACAG
TTTAACGTAC GGCGCCGCCG ACTACTTTTT CATTCCGTAC GGGACGTACT GGCGCTTCCT GAAGAAGCTT TGCATGACGG
AGCTTCTGAG CGGGAAGACT CTGGAGCATT TTGTGGGCAT TCGCGAGAGC GAGGTGGAAG CGTTTTTGAA GCGGATGTTG
GAGATGTCGG CGACGGGGAA GGAGGTGGTG ATGAGGCAAG AGCTGATAAC GCACACGAAT AACATTATCA CGAGAATGAT
CATGGGGAAG AAGAGTAGTG GTGCGGATGA TTTTGTGGCG CAGTTGAGGA AGGTGGTGAG GGAAGTGGGG GAGTTGCTGG
GGGCGTTCAA CTTGGGAGAT ATTTTGGGGT TTGCGAAGCC TTTTGATCTG CAGGGGTATG GGAAGAAGAA CATGGAAACG
CACCGCAAGG TGGATACGAT GATGGAGAAG GTGCTGAAGG AGCACGAAGA GGCGAGGGCC AAAGCAGGTG CTGACAGTGA
TAGGAAGAAA GATCTCTTCG ACATTCTCTT GAACCTCATT GAAGCTGATG GTGCTGACAA TAAACTCACA AGGGAAAGTG
CCAAAGCCTT TGCTCTGGAC ATGTTCATCG CCGGCACAAA CGGACCCGCT AGTGTTCTGG AATGGTCCCT CGCGGAGCTG
GTGAGAAACC CGGAGGTGTT GAAGAAGGCG AGAGAGGAGA TAGAGTGTGT GGTGGGAAAG GAGAGGCTGG TGAAGGAGTC
AGACATTCCT AACCTCCCTT ATCTGCAAGC AGTGGTGAAG GAGACTCTGA GAATGCACCC TCCGACCCCA ATCTTCGCGC
GAGAAGCCAT GCGCACGTGC CAGGTTGACG GCTACGACAT TCCTGCGCAC TCCACCATCA TGATCAGCAC GTGGGCCATC
GGCAGAGACC CCAACTACTG GGACAACCCG CTGGAGTACA ACCCTGAGAG GTTCTTGGTT TCCGATGAGC TTGGTAAAGG
CAAAATCGAC GTGAGGGGAC AGTACTACCA GCTTCTACCC TTCGGAAGCG GACGAAGAAG CTGCCCCGGA GCCTCACTTG
CGTTACTCGT CATGCAAGCC ACACTCGCGA GTTTGATACA GTGCTTCGAT TGGGTGGTGA ATGATGGGAA GAGTCACGAC
ATTGACATGA CGGAGGAGGG AAGAGTGACG GTGTTTTTGG CGAAGCCGCT TACGTGCAAG CCTGTTCCGC GGTTCACTCC
CTTCGCTGCA TGA

>Vigan.04G166700.01
MIDIQGCLAL FFLWLISTIF IRSVFKKSQK LPPGPPISIP LLGHAPYLRS VLHQALYKLS LRYGPLIHIK IGYKNIVVAS
SAETAKEILK TSEEAFCNRP LMIASDSLTY GAADYFFIPY GTYWRFLKKL CMTELLSGKT LEHFVGIRES EVEAFLKRML
EMSATGKEVV MRQELITHTN NIITRMIMGK KSSGADDFVA QLRKVVREVG ELLGAFNLGD ILGFAKPFDL QGYGKKNMET
HRKVDTMMEK VLKEHEEARA KAGADSDRKK DLFDILLNLI EADGADNKLT RESAKAFALD MFIAGTNGPA SVLEWSLAEL
VRNPEVLKKA REEIECVVGK ERLVKESDIP NLPYLQAVVK ETLRMHPPTP IFAREAMRTC QVDGYDIPAH STIMISTWAI
GRDPNYWDNP LEYNPERFLV SDELGKGKID VRGQYYQLLP FGSGRRSCPG ASLALLVMQA TLASLIQCFD WVVNDGKSHD
IDMTEEGRVT VFLAKPLTCK PVPRFTPFAA *