GBrowse Details

Vigan.04G165900.01

Basic Information:
Name: Vigan.04G165900.01
Multiple alignment
Variant Information
Position: Chr04:23311193..23313326 (+ strand)
Length: 2134
Functional Information:
Description: Similar to Small ubiquitin-related modifier 2-like protein. [T2DN76, Phaseolus vulgaris]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Ubiquitin domain (IPR000626)
Rad60/SUMO-like domain (IPR022617)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.37,6.57,32.02,71.02,57.31,81.62,19.60,37.25
Arabidopsis thaliana homolog: AT4G26840.1
Automatic updates:
Name: NM_001248663 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305708 (LOC100305708), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:23311193..23311372 (+ strand)
Length: 180
Type: five_prime_UTR
Position: Chr04:23311373..23311462 (+ strand)
Length: 90
Type: CDS
Position: Chr04:23312817..23312966 (+ strand)
Length: 150
Type: CDS
Position: Chr04:23313053..23313124 (+ strand)
Length: 72
Type: CDS
Position: Chr04:23313125..23313326 (+ strand)
Length: 202
Type: three_prime_UTR

>Vigan.04G165900.01 class=Sequence position=Chr04:23311193..23313326 (+ strand)
CTCACAGACA TACACAATAT CTACATAGCG TAAAACTAAC GCACTGGCAC GTGTTTCTTG ATTTGTGTCG TTCGTACCCA
CTACGCTACT ATATATACTG AGCAAAGGTG TTGTTTTCTT TGCAATAGAA ACACACCAAA TTCTCACTGT AAGAGTACGA
ACAAGGTGTG AAGCTTGAAA ATGTCTTCAT CAGGAGGCAG AGGAAGCCAG GAAGAGGAGA AGAAGGGCTC TGATCAAGGA
GCACATATCA ATCTCAAAGT CAAGGGACAG GTTTCAATCC TCTGTTCATC TTCACTTTCT TCAATTTCAT TATTGTTGTT
AGGAAATAAA ATAAAATTAG TGTGTTTTGG TTTTTGTGAT TTTGTTTCTC TTATGCATGA ACATGTTCTT TATCCCTTAC
TGTAGTTTCA ATCATCTGGC TTCATGATAT CTTATTGCAT GATTGGTGTA TAATTTTACT TCTTGAAAAT GTTATTGGAT
TTGTGTTGAG TTTACATGGA GAAATATCTA CTGAGAAAGG ATAATGGTTA AATGATATTT GGAGGCATTA ATGACTGGAG
GTTACTTTAG TTTACCCAAG AAAAAGTATG TCTGATATTT AAGAGATTTT CAGATTTTCA TTTTAGGCAG TTTTCATTGA
AACTGAGTTT TGAGAGATTT TTGTTCTAAG TAGTTTTCAT TGAATAATTT TCATTAACAA GTTGTCTTGA ATTTGAATTG
TAGAAATTCA ACTGTGACTG TTTTAAATAT TCTGAATACT AGTTTTGTGT TATGTTCAGA AAAATTTCTT TTTAGTATCA
TTTAAAAATG TTATTTTTGA ATTTGTCTTT GTCTCTACTG TAATGTCATG CTTCATGTTT GCTAAGTAAG TTTTTTTTAG
GGTTTGACAC TCTTATTACC TTTGTTTGAA ATATTTTGTT TTCTATTTTT CAAAGTTTTA ATCTGTTATT GACATGACTA
CATTTCTATC ATCCATAATT ATTGTTCTCA TGACAGTTTA AAATTGAAAT TAAGAGACTT TTATAACAAA ATGATGAAAA
AGTTATGTTG ATTTCAAATC AATTTACTTT TCATTTGTAC CAAAGAAAAA TTTAGTATTG ATCCCATGAC TCTGCTTTGT
TTAGAAAAAC AGAGAAACGC TCCTCTCACT TTGCCTTTAG GAAACAGTGA TATATATATA TATATATATA TATATATATA
TATGTATATA TATATATATA TATATATGTA TATATATATA TATATATATG TATATATATA TGTATATATA TATAGTATGA
GAAATATGTG GAATGGTGAA TATGGAATTA TTTAGTATAA TTTGTTTGTT TTTGTCATGC AATTTTTTTT ATAATGCATT
TGTTAGTTCA GTTCTTTTGT CATGTAGACA TGTTCACTGT TCTGATCTAG TTTCTTTACC TATCTTTTTG GGGCATTTTT
GGAAACTATG ACATGTTTAT GTTGTTTTAT TATCTTTATC CAACAAACAT TATTTCCTAA TACAATTTTC TTTTGGAAGA
ATATTTCTAC ACATTTTTCA TGCTTCTGAT GTTGATTTCT CTGCAGGATG GTAATGAGGT TTTCTTACAC ATTTTTCATG
CTTCTGATGT TGATTTCTCT GTAGGATGGT AATGAGGTTT TCTTCAGGAT TAAAAGAAGC ACTCAGCTGA AGAAACTCAT
GAATGCATAC TGTGATAGAC AATCTGTAGA TTTTAGCTCA ATTGCTTTCT TGTTTGATGG AAGAAGACTT AGAGCTGAAC
AAACCCCAGA TGAGGTAAAC ATAGTTTGGT TGTGTTTTGT AACCTCAAAG TTTTCTTTAT TAACTGCTGC AAAGTATAAT
GCAACTGTTA CAATGTGCAG CTAGAGATGG AAGATGGGGA TGAGATAGAT GCAATGTTAC ACCAAACTGG AGGTGGATAT
AAATTTCTTT GAATGTATGT TATCTATTTC TGAATGCCTG AGAAACCATT GGTATTTGGT GCTTGTTTCA AGGTTTATAT
TTTGATATGA TATTTATGAT TATGATGTTA ATGTAAACAG TGGACAATTT TCAATATGAA TTTTCCATAT TTACTAATGT
TTTGTTGTTT AAAATATTGT TATAATTGTG TGGATACAGT ATTGTGGACT TTGC

>Vigan.04G165900.01
CTCACAGACA TACACAATAT CTACATAGCG TAAAACTAAC GCACTGGCAC GTGTTTCTTG ATTTGTGTCG TTCGTACCCA
CTACGCTACT ATATATACTG AGCAAAGGTG TTGTTTTCTT TGCAATAGAA ACACACCAAA TTCTCACTGT AAGAGTACGA
ACAAGGTGTG AAGCTTGAAA ATGTCTTCAT CAGGAGGCAG AGGAAGCCAG GAAGAGGAGA AGAAGGGCTC TGATCAAGGA
GCACATATCA ATCTCAAAGT CAAGGGACAG GATGGTAATG AGGTTTTCTT CAGGATTAAA AGAAGCACTC AGCTGAAGAA
ACTCATGAAT GCATACTGTG ATAGACAATC TGTAGATTTT AGCTCAATTG CTTTCTTGTT TGATGGAAGA AGACTTAGAG
CTGAACAAAC CCCAGATGAG CTAGAGATGG AAGATGGGGA TGAGATAGAT GCAATGTTAC ACCAAACTGG AGGTGGATAT
AAATTTCTTT GAATGTATGT TATCTATTTC TGAATGCCTG AGAAACCATT GGTATTTGGT GCTTGTTTCA AGGTTTATAT
TTTGATATGA TATTTATGAT TATGATGTTA ATGTAAACAG TGGACAATTT TCAATATGAA TTTTCCATAT TTACTAATGT
TTTGTTGTTT AAAATATTGT TATAATTGTG TGGATACAGT ATTGTGGACT TTGC

>Vigan.04G165900.01
ATGTCTTCAT CAGGAGGCAG AGGAAGCCAG GAAGAGGAGA AGAAGGGCTC TGATCAAGGA GCACATATCA ATCTCAAAGT
CAAGGGACAG GATGGTAATG AGGTTTTCTT CAGGATTAAA AGAAGCACTC AGCTGAAGAA ACTCATGAAT GCATACTGTG
ATAGACAATC TGTAGATTTT AGCTCAATTG CTTTCTTGTT TGATGGAAGA AGACTTAGAG CTGAACAAAC CCCAGATGAG
CTAGAGATGG AAGATGGGGA TGAGATAGAT GCAATGTTAC ACCAAACTGG AGGTGGATAT AAATTTCTTT GA

>Vigan.04G165900.01
MSSSGGRGSQ EEEKKGSDQG AHINLKVKGQ DGNEVFFRIK RSTQLKKLMN AYCDRQSVDF SSIAFLFDGR RLRAEQTPDE
LEMEDGDEID AMLHQTGGGY KFL*