GBrowse Details

Vigan.04G164500.01

Basic Information:
Name: Vigan.04G164500.01
Multiple alignment
Variant Information
Position: Chr04:23140636..23145042 (+ strand)
Length: 4407
Functional Information:
Description: Similar to Uncharacterized protein. [I1KZ55, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Sterile alpha motif domain (IPR001660)
Sterile alpha motif/pointed domain (IPR013761)
Sterile alpha motif, type 1 (IPR021129)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:32.52,21.04,20.62,23.79,23.40,20.11,31.05,20.33
Arabidopsis thaliana homolog: AT3G07170.1
Automatic updates:
Name: NM_001250869 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527300 (LOC100527300), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:23140636..23140934 (+ strand)
Length: 299
Type: five_prime_UTR
Position: Chr04:23140935..23141041 (+ strand)
Length: 107
Type: CDS
Position: Chr04:23142018..23142079 (+ strand)
Length: 62
Type: CDS
Position: Chr04:23142187..23142452 (+ strand)
Length: 266
Type: CDS
Position: Chr04:23143995..23144069 (+ strand)
Length: 75
Type: CDS
Position: Chr04:23144309..23144371 (+ strand)
Length: 63
Type: CDS
Position: Chr04:23144523..23144567 (+ strand)
Length: 45
Type: CDS
Position: Chr04:23144568..23145042 (+ strand)
Length: 475
Type: three_prime_UTR

>Vigan.04G164500.01 class=Sequence position=Chr04:23140636..23145042 (+ strand)
ATCCACGCCA AACGCGACCT TATTGGTTAC CACTCACTCA CCCTTTTCTT CTATCTGCGA CCCCATTGAG ACTTGATAGA
CTCTCACAAC TCCCAAATTC CAAAGCCAAT TTTTCTCTTT TTGTTTTGTT TTCTTTTTGA GGGGTGAAAT TTGCAATCTC
CAAGAAGCAG TGTTCTTATT CTCTTTCTAT CAAATTCACA GGGGTTTGAT TCTCTGGAAC CGTTTCACAA TTTGGGTTCG
TGCACCTTCA GCAAGTGTTT GTGTTTAGGT TTAGGTTTCA TTTGGAACAA ACGCAAAGGA TGTATGCTGA TCGGGTTGAG
ACTGGAACTC GGAGGTCAGT GAAAGAACGT CTTGATGGGA ATTTCCTCAC CGATTCTACT CGCCAACACA AAGTCACCGG
AAAGAGGTTA TTGTGTTGCT ATTATTGTTG TTGTTATTAT TATTAATGCA TGTAGATTAT TTATATTTCC ACTGTAGAAA
AAAAAAATAT GAATTTGTTG ATGTATTTGG TGTTGCATTC TGCATTTTTT GATGGTGTGG AATGACTTTG TGCTGCCTTG
ATCTTGGTGT GATGGTTGTG AGGGCTTTTG CTTATCTTTT TGAATATCCC TGTCTAGTGG TGGCAAGGGA TTGGAGTGAT
AAGGGTTCAT GAGTTAGGTC AGTGAAGGTG TTTGGAGAAC TGCTTTGTCT TTTTGTGATC TTCTATATGG GAATTGAGCA
ATTGGGGAAA TGGCTTGGCC TGGAGCAGGG AGGAGTTCCT TGAGAGGTGA AACTGTCGTA AATACTTATC CGAGGTGGGG
GCTTATGATG ATGCAGTGGC TGTTATTGAG GATTGATTTT AATTTTCAAT CAGAGGATTA CTGTATTCTC ATTGTCTGAT
TGGTTTAGAG CCTCTTTGAT TATATAAGAT GTTTGGGTAT TTGTTTGGAA TTGTTCGTTC AGTGTTTTGG TGTTGTGACA
TGTGATTTAT ACTTTGAATG TGGAGTTTTG GTGATGGTCT GTAGATATTT TGTGCCCTTC GTGTTTAGTA TGCTGGTGGG
AGGCAGGGGA GAGGGGTATA ATTTTTAGGG TTTTTACTGG TGCTTCACAA TGAGTGACTG TCTTAATTGC TATTTTACTC
GTTGAATTGT TTGATTTCAT GAGGTGGGAT AGGTAGATTA ATCCTGATCT TTGAGCTAAG GCCCTGCTTA GACCTGGGCA
ACCTTGTTAA TGAGGGAAAC CTTGTAGGAG CAATGCTCAT TCGTTGGTTG GGTTATTTCT GATTTATTTG TATTCATTAT
GTTCTACTTG ATTGTTTAGC ACTGTGGACG TTCTATGTTG CAAACTTAAA TGCTTATTTA AACTAAAGAC TTGGTGATGT
ATCCAAATCA TGATTTTTGC AGGCAGAGGC AAGATGACAA GTGGAAACAT GATCTCTATG ACGATGATGA ACCCCAGCTC
TATAGTATGG ATTGATTATG TTATTCTCAT ATGCAAGTAT AAGTTGCTGC TCTTGTTGGA TGCCGATAGT TGATTTTATG
GGTTTTGACT GTGTGTTAAT GACTTGTGAA GATCGCAAGG TCACTGCTCA AGATCTTCGT TTGAAGCTTC AAAAGAAAGG
CCTGCATCCT GGAGGTCAAA CTGGAAAGAG TTCTGTTCCT GTTGAGAGGG ATCTCCGTGA AAAGCTATCA GGGACAATGA
CTCCACAACC TAAAAACTAT GATCCACCAA AGCCCAAAGT GACTGCTAAA CCAAGCAGTA AAAGTATAGA TGTTGAGACC
CCTTCAGTAC ATGTCAAAAG ATCAGCTAAC CCAACTCCTA AAAAGGTGTC CCGAAAGGTA TATTGTTGAC ATATCTTTCT
TTGTTGTTCA ATCAAGATTT CCTAGAATGG TCTTGCAGGG ATATTGGTTG TAGTGTTTGT CATGTTCTGT TACCCTGTTC
CCTCTACATT CAGCATTTCA TTGGCTGTTA AACTAGTGAT AATCTTCTTA AAACAATGAC AATGATTGCC TTGGTAATTT
TATTTAATTT ACTATTATGA TGTATCAGAT TCATTGGCTT CTTTATATTA GTGAGCTAAC CTTAATTTTA AGGTGTTTTA
TTAGAGTGAT GACCAAGGAC TGTATTTTTG TTCATGTAAT TTCACTAGAC TGATATTACG TTAGCCACTT TCATGCTGTC
TAATATAACA GTATAAAAAA TGGATATGTG ATTCTCTGCT TGTGCCCTAT ATGGGTTGAA TTCATCCCAT TACACTTGAA
GTTAGCCAGT AGAGACTAGA ATTTTTTCTT GCATTGTATT ATGTTAGTAA TACTATTATT TTATACTGAT TTTTTGCAAA
ATATGCTGTT ACCTGTGCAT ATGATAAAAG TCAAGCTGTA AAGCTGGGAT GGGAGGGCAA TAATTGTATC ATAGATTTTG
TGCTATGTTG AAAGATTATG TAATATTGAA AACTCAGACG CAATTAGTAG TTAAATGTAG TTAACTTAAA TTCTTAATAG
GACGGATTTG TGAAAAAGCA TTAGAAATTC AAATATTTAA CATAGGATTA GATGCAGGGC AAAAATTGTT AAATATAATT
CAATGTTTAA TAGCTGTTTA GGCTGTTGTA GCTTTCAGTA CTGTTTATTA GTGTGCAGTA GGATTAACAG TAACCTGTCA
TTTAATTATG AATTATGATC CACCCTCAAT ATCCTGAATT AGATGATTAT TTAATGAATA AACTATAAAT AAATAGAATA
AGGACTTGGG TCTTGGAATT TGTCAAAGAC TAACTACTGA AAGCTTAACT TGTTAGGTAT GGCTATGAAT GGTTTTACAT
ATAGCATGCC TTCTTATGCA AGAGCTCTTT GGTTATGAAC TGCAAATGAT GCAAATGTGC TCTTTACCAT CCAAGGCCAA
CTTTTAAAAT GTTTGTTGGA GATTGTGGCC CAATGATGGT TATATGTCTA TTTTCCGCCT CCTACTTATC TCTGTTGGGA
TGTGACACTA CTGGGAGGCT GGAAATAGTT TTAAGAACTA AACATTTGTT ATTATGATAC TGAAAGTGAA AGTAGATGAC
GCATTTTTGT TTGTGATCCG AACCTGATTG ATTATTGAGA TAAAAACAAT GGAGACACCA GGATTGTAAT AATCCCTGGA
TGTAAGTTTC TTTTAAAATA TTTAATCCTT TAATTTTTTT CCTAGTTTTC TTTTTTTATC TCTGTTTTTA TTATATTATC
TTCTTAAATA GATGAAACTG TCCCACATTT TATTCACACG TACAAAATAA TTATGTGAAA TGAGCCGTTG TTTTTCCCAG
AATTTTCCGT GCTAGGCAAT GTGTTTCTTT ACTTGTGGAA AAAACTAAAT TCAGTATAAC CCTGCTTCTT GCTTGACAGG
CTGACTCATC ACTGGATGAA TTTTTGCTGT CACTGGGTCT CGAAAAGTAT CTCATAAGTT TTCAGGCTGA GGAAGTATGT
CGTATATCTG TTATCTCGCC TTTATCGAAA TCCATGTTCC TTCATCTTAG TTTTTAGAGA AATAGTAATT GTGAATTTTT
CTTCAGAAGG TTGCAGAGGG AAATGATTTA TTCAAAATAA GCCAATCTAA ATATGTAGTT ACATTTAGAC TAGAATTAAA
TACGATAGCT GGATTTTAAT TGCACATTAG AGAGTTGAAG TTCAAAATTT ATGACAGAAA GCTATTTCTT CAGGTTGATA
TGACTGCACT CAATCATATG ACTGATGAGG ATCTGAAGGC CATGGGTATA CCAATGGTAC GTATAATCGA GGAGCGTGGA
TTCCTCACTC CCACAAATTC CTAAATTCTT ATTTATCTCA AGTCAACCCT TCTCTAGTTT TGATGTAGCC ATTATTAACA
TTTTCTGCTT TTCTTAATTC GATTCTGATA TGCTTTGTTG ATTTCAGGGA CCAAGAAAGA AGATACTTTT AGCCTTGGAG
GCAAAAGGCT GACATCTTGG TCGTGTATTT GTATACCCTT GTTATAACTT ACTGCACATT AAAAGGCTTA TAATTATGTT
TATACTTTGA ACCTGGTCAA GCTTGCTTGT AATTTTTTAG AAATCCTTTT GGTGCTTCTA TTGCCATTTC AATCTTCTTT
CTTCCCATGC GTTGCTGAAA GTGGCCTAAA CAAGCTATTG ACATTTAAAA GTAGGAAATC ATGAAGATTA ATTGATAAGA
GTTTTTTTGT TTAGCTGGAG GGACCTGGTT TGATGGGTGA TGGTGATGGT GGATGCTTTG TAAAATGAAG TTTGCCTGTT
TTCCTTTTTT ACTTTGAAAC CAAACATGCT TTTCCTTTTT AATGTATTCC CTTTATGATT TTGAATGTCT ATACAATTTG
AGTGTTTGCA AATTCATGCG TACTGTGGAT CAATTTCAAT GCTGACAATG CTAAATAAAC TAGCTCAAGT GCCAAATTTC
CTGTGCA

>Vigan.04G164500.01
ATCCACGCCA AACGCGACCT TATTGGTTAC CACTCACTCA CCCTTTTCTT CTATCTGCGA CCCCATTGAG ACTTGATAGA
CTCTCACAAC TCCCAAATTC CAAAGCCAAT TTTTCTCTTT TTGTTTTGTT TTCTTTTTGA GGGGTGAAAT TTGCAATCTC
CAAGAAGCAG TGTTCTTATT CTCTTTCTAT CAAATTCACA GGGGTTTGAT TCTCTGGAAC CGTTTCACAA TTTGGGTTCG
TGCACCTTCA GCAAGTGTTT GTGTTTAGGT TTAGGTTTCA TTTGGAACAA ACGCAAAGGA TGTATGCTGA TCGGGTTGAG
ACTGGAACTC GGAGGTCAGT GAAAGAACGT CTTGATGGGA ATTTCCTCAC CGATTCTACT CGCCAACACA AAGTCACCGG
AAAGAGGCAG AGGCAAGATG ACAAGTGGAA ACATGATCTC TATGACGATG ATGAACCCCA GCTCTATAAT CGCAAGGTCA
CTGCTCAAGA TCTTCGTTTG AAGCTTCAAA AGAAAGGCCT GCATCCTGGA GGTCAAACTG GAAAGAGTTC TGTTCCTGTT
GAGAGGGATC TCCGTGAAAA GCTATCAGGG ACAATGACTC CACAACCTAA AAACTATGAT CCACCAAAGC CCAAAGTGAC
TGCTAAACCA AGCAGTAAAA GTATAGATGT TGAGACCCCT TCAGTACATG TCAAAAGATC AGCTAACCCA ACTCCTAAAA
AGGTGTCCCG AAAGGCTGAC TCATCACTGG ATGAATTTTT GCTGTCACTG GGTCTCGAAA AGTATCTCAT AAGTTTTCAG
GCTGAGGAAG TTGATATGAC TGCACTCAAT CATATGACTG ATGAGGATCT GAAGGCCATG GGTATACCAA TGGGACCAAG
AAAGAAGATA CTTTTAGCCT TGGAGGCAAA AGGCTGACAT CTTGGTCGTG TATTTGTATA CCCTTGTTAT AACTTACTGC
ACATTAAAAG GCTTATAATT ATGTTTATAC TTTGAACCTG GTCAAGCTTG CTTGTAATTT TTTAGAAATC CTTTTGGTGC
TTCTATTGCC ATTTCAATCT TCTTTCTTCC CATGCGTTGC TGAAAGTGGC CTAAACAAGC TATTGACATT TAAAAGTAGG
AAATCATGAA GATTAATTGA TAAGAGTTTT TTTGTTTAGC TGGAGGGACC TGGTTTGATG GGTGATGGTG ATGGTGGATG
CTTTGTAAAA TGAAGTTTGC CTGTTTTCCT TTTTTACTTT GAAACCAAAC ATGCTTTTCC TTTTTAATGT ATTCCCTTTA
TGATTTTGAA TGTCTATACA ATTTGAGTGT TTGCAAATTC ATGCGTACTG TGGATCAATT TCAATGCTGA CAATGCTAAA
TAAACTAGCT CAAGTGCCAA ATTTCCTGTG CA

>Vigan.04G164500.01
ATGTATGCTG ATCGGGTTGA GACTGGAACT CGGAGGTCAG TGAAAGAACG TCTTGATGGG AATTTCCTCA CCGATTCTAC
TCGCCAACAC AAAGTCACCG GAAAGAGGCA GAGGCAAGAT GACAAGTGGA AACATGATCT CTATGACGAT GATGAACCCC
AGCTCTATAA TCGCAAGGTC ACTGCTCAAG ATCTTCGTTT GAAGCTTCAA AAGAAAGGCC TGCATCCTGG AGGTCAAACT
GGAAAGAGTT CTGTTCCTGT TGAGAGGGAT CTCCGTGAAA AGCTATCAGG GACAATGACT CCACAACCTA AAAACTATGA
TCCACCAAAG CCCAAAGTGA CTGCTAAACC AAGCAGTAAA AGTATAGATG TTGAGACCCC TTCAGTACAT GTCAAAAGAT
CAGCTAACCC AACTCCTAAA AAGGTGTCCC GAAAGGCTGA CTCATCACTG GATGAATTTT TGCTGTCACT GGGTCTCGAA
AAGTATCTCA TAAGTTTTCA GGCTGAGGAA GTTGATATGA CTGCACTCAA TCATATGACT GATGAGGATC TGAAGGCCAT
GGGTATACCA ATGGGACCAA GAAAGAAGAT ACTTTTAGCC TTGGAGGCAA AAGGCTGA

>Vigan.04G164500.01
MYADRVETGT RRSVKERLDG NFLTDSTRQH KVTGKRQRQD DKWKHDLYDD DEPQLYNRKV TAQDLRLKLQ KKGLHPGGQT
GKSSVPVERD LREKLSGTMT PQPKNYDPPK PKVTAKPSSK SIDVETPSVH VKRSANPTPK KVSRKADSSL DEFLLSLGLE
KYLISFQAEE VDMTALNHMT DEDLKAMGIP MGPRKKILLA LEAKG*