VIGGS:GBrowse

Vigan.04G156700.01

Basic Information:

Name:	Vigan.04G156700.01 Multiple alignment Variant Information
Position:	Chr04:21721068..21724426 (+ strand)
Length:	3359

Functional Information:

Description:	Similar to Uncharacterized protein. [G3ECQ7, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.51,8.59,11.20,18.30,30.22,23.06,11.46

Automatic updates:

Name:	NM_001254056 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ras-related protein RABA5b-like (LOC100808333), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:21721068..21721274 (+ strand)
Length:	207
Type:	five_prime_UTR

Position:	Chr04:21721275..21721608 (+ strand)
Length:	334
Type:	CDS

Position:	Chr04:21723868..21724175 (+ strand)
Length:	308
Type:	CDS

Position:	Chr04:21724176..21724426 (+ strand)
Length:	251
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.04G156700.01 class=Sequence position=Chr04:21721068..21724426 (+ strand)
CAGCACTATC CCTAAAACCC CGCCACCAAT CACGCCAAAA TTCCAAAATA AAATCCGAAA AACAAAACCC ATTTCACTAC
ATAACTCACT TCACGTTCTT CTCCTTTTAT CTTCCCTTCA CACACGCCAA CTACGTGACA CCCACTCACT CCTCCTGTCA
TCACATAACA ACCTTCAACC ATTCCCTTTC TCGCTCAACC CTCGCTCATG GCAGAGAACG GCGACGGCGC CGAGGAGTAC
CTCTTCAAGG TCGTCCTCAT CGGGGACTCT GCGGTCGGCA AGTCCAACCT CCTGTCGCGC TTCGCGCGGA ATGAGTTCGA
CAGCAACTCC AAGGCCACCA TTGGGGTGGA GTTCCAGACG CAGGTGGTGG AGATCGACGG CAAGGAGGTC AAGGCGCAGA
TCTGGGACAC TGCCGGCCAG GAGCGCTTCC GAGCCGTCAC TTCTGCTTAC TACAGAGGCG CCGTTGGAGC GCTAGTCGTC
TACGATATCA GCAGGAGAGG CACCTTCGAC GGCATCAAGC GATGGCTCGA AGAGCTCACT AGTGAGTGCT TTTTATTTGC
TTCCTTTGGA ATTTGAAATT GGAAATGCTG GTTGTGGTCT TTGTTGATTG TTTTTTTCTT CTCCTAAATG ATTCTCTAAA
CAGCTTGATT ATACTAGTGT CGTTCAAGTA ATAGAAATTA TGCTGCATGA TCCTCCAAAT ATTGAAAAAT TGTTCAATTT
CGTTTTTAAA TCTCACTAAA ATATATGGAC ATTATTCATT CCATTGCATA ATTCCTATTT TCAGCATCTT AAAGCATTTA
TACTGAGTTG TTTAACAAAA TTACATGTGA TTTTTGGTTA CTTGATATTT GAGTGAGTTG CGTATATAAG AAGCAATTGT
TTCTTATGAA GTACTTAGTA TATATGTTTT ATTTTTCTTA GAAGTCCCAT TCATCTCAAT CTGTTGACTT TCTTCTGTCA
TCTTCAGGAG TTTGAAGCAT TGTTAGAATG ATAATTCAAA CACAGCCTTT AGTGTTTGTA TTAAACATGA CATAATATGA
AGTGTTGAAG ACATTTATTT GGATTAAGTG ATTTGTTGGT AAAAATTTTA ATTGCAGGGA AAATTTGTTG GTTTACTAAA
AATTAAGTGA GATGGATAGA GCACTGAATA TTTTCTTTTA GATAATATTT AAAATGAGTA TTGGGTAAGA ATAAAAAATG
CTAAATTATG TTGTTTCATT GTTTTTCCAA ATGGTTAACA TTTTGATTAT TTTCATTGTA AAATTCCCAA ACTTTGTCCC
ATTCATTTCA TTCCGTTATA CTTCAATGTA TTTGAATTTT TTCTCACTAA TTTAAACAGC CTCAGCGATA CTCATATAGT
TTTATAACTT TAGAACTATT TAGGATAAAG TAGTATTTGA GGATCATGTT GGTGGTCTGT TAGTTTTTTA ATTTTTAGTT
ACCTCTAATT GATTTCGAAA AATATACAGG ATGGGTCTAG GTAGTTTCTG TATATGGAAA TTACTTTCAA CGTCCCTCAA
AGTGTGAAGA TTCTGTTATG TCCTAATTTG ACCAAAAAAT GCATATTTGG GGACTGATTT CACGGTTAAT TTCAATATTT
GAGAACGACT ATTATAAATT TTGTGCAATG GGGACTGATA TGATCAATCC TATGTAAAAG AAGTGTTGGA ATATATTATC
TAATACATTA AAATTTATTA AGAATGATAA CATTACGAGT TTGACATAGT AAATAAGGAC TGAGTTTCTG AGAGTCACAC
ATTTATTTAT TTTAATAAAT TTATAATTAT ACAAAGTGTT TCCAAAAGAA CGTGGTAAAA AATATTTTAG CGTGTCTTTT
TTTGGTTTTA TTGTAGTATT TGATTATGCA TGTGATGATT AAAAGCTGCT AGGCATCATG TCTGTTGTCG GAGTTGTCTT
TATTTTAAAG ATGATGAATC TGATTCTGTG CAGTTGAATT TTCAACTACA CAAATCTTCA TCTTCCAAAA TATACTTTAC
TCATCAAACT ATAAAGCTAA AAGGCTAGTT TATAAATTTT AAACGGAAAA TTGGAACTGC ATAACCCTAC ATTTATATCA
CAACTGCAGA GGTTCGTATT CCGTGAAGAT GGAATGCTAC CCTTGCATAT TATTTACTCT ACTGTATAAA TTACTGAAAT
AAACAGCTAT GTTCGTGATC TAATGTTTAT TTCTGACAGT TTTCGGCGAT ATTTTACACT TTGTGAAATT GTAAGATCAA
GCCTATCTTA TGATATCATA TAGATATATT ATAGGGAAAT ATGAAATCAG AGCATCAAAT TAGTATATCA TTTTGTTTTA
TAACTGTTTA ACTTTACTGC CGATGAGAGT TCACCCTCTA AATATCAGGG TGTCATCAGC TTAATTCTCA AAAATGTAGT
CATTAAGTGT GTCCCCCCAA TTACGCAAAC AAAAAGTGTC AGAAATTTGG CCCTCTGTCT AAGAGAAAAG GAATATAATG
AAACCCTTAT TTAGAATTTT ATGATATTTT GGATAATTGA TGACATTTAT TAGTAACGCC TTAAACTGAA GAAAAAATTC
TTGAGTGCCA AAATGAAGGC GCTCGTATTT TTGGAAGACG AGAGTATAAG GTCTGCTGGT CCTTTTGGAC TCACTCAAAA
CCATATGGAA AATATGCACT TTAGAACATG CATTGTGATC TTTGCTATAT ACTGTTTTCC ATCAGCTACA TGCCTTATAG
CACTTGAATT CTTACTAGAG GTTTTATTTT GGTGAAGTTT TGTAACGGAG GATTTGATTC ATGCTTAAAT TATCCTGCAG
CTCAAAACGA CAGCACCGTA GCAAGAATGT TGGTGGGAAA CAAATGCGAC TTGGAGAATA TTAGAGAGGT GAGCACAGAA
GAAGGCAAAA ATCTTGCAGA AGAAGAGGGC CTGTTCTTTA TGGAGACATC TGCACTCGAT TCTACGAATG TCCAAACAGC
TTTCGAGATT GTTATCCGTG AAATATACAA CAATATCAGT CGTAAAACAT TGAACTCTGA TTCTTACAAG ACTGAGTTGT
CTGTGAATCG AGTAAGCTTG GTTAATGGGG CAGGATCAAA GCAAGGTCTT TCTTGTTGTG CTCGATGAGC TTTTATCTTA
ACTCGGATTC GGTGCTTCTT TGGATCTTGC GAGAGTAGAT TCTTGTTCTT TACTTTTTTT TCCCATGTTA CGATGGCTGC
CATATTTTTG TTTTCCTTTT TCTTTCAACC TGCAAATTTG CAGTGCTTGG TACCTGTCTC ACAAGAAAAA AATAAGGAGA
TTTACTCTTA CATGAATGAT TTTTAAATAT ATTTTGTATT TGTTAAGAAC CATAGGATAT GCCAACTGAG TTTGTCAAG

[show][hide][copy]TRANSCRIPT

>Vigan.04G156700.01
CAGCACTATC CCTAAAACCC CGCCACCAAT CACGCCAAAA TTCCAAAATA AAATCCGAAA AACAAAACCC ATTTCACTAC
ATAACTCACT TCACGTTCTT CTCCTTTTAT CTTCCCTTCA CACACGCCAA CTACGTGACA CCCACTCACT CCTCCTGTCA
TCACATAACA ACCTTCAACC ATTCCCTTTC TCGCTCAACC CTCGCTCATG GCAGAGAACG GCGACGGCGC CGAGGAGTAC
CTCTTCAAGG TCGTCCTCAT CGGGGACTCT GCGGTCGGCA AGTCCAACCT CCTGTCGCGC TTCGCGCGGA ATGAGTTCGA
CAGCAACTCC AAGGCCACCA TTGGGGTGGA GTTCCAGACG CAGGTGGTGG AGATCGACGG CAAGGAGGTC AAGGCGCAGA
TCTGGGACAC TGCCGGCCAG GAGCGCTTCC GAGCCGTCAC TTCTGCTTAC TACAGAGGCG CCGTTGGAGC GCTAGTCGTC
TACGATATCA GCAGGAGAGG CACCTTCGAC GGCATCAAGC GATGGCTCGA AGAGCTCACT ACTCAAAACG ACAGCACCGT
AGCAAGAATG TTGGTGGGAA ACAAATGCGA CTTGGAGAAT ATTAGAGAGG TGAGCACAGA AGAAGGCAAA AATCTTGCAG
AAGAAGAGGG CCTGTTCTTT ATGGAGACAT CTGCACTCGA TTCTACGAAT GTCCAAACAG CTTTCGAGAT TGTTATCCGT
GAAATATACA ACAATATCAG TCGTAAAACA TTGAACTCTG ATTCTTACAA GACTGAGTTG TCTGTGAATC GAGTAAGCTT
GGTTAATGGG GCAGGATCAA AGCAAGGTCT TTCTTGTTGT GCTCGATGAG CTTTTATCTT AACTCGGATT CGGTGCTTCT
TTGGATCTTG CGAGAGTAGA TTCTTGTTCT TTACTTTTTT TTCCCATGTT ACGATGGCTG CCATATTTTT GTTTTCCTTT
TTCTTTCAAC CTGCAAATTT GCAGTGCTTG GTACCTGTCT CACAAGAAAA AAATAAGGAG ATTTACTCTT ACATGAATGA
TTTTTAAATA TATTTTGTAT TTGTTAAGAA CCATAGGATA TGCCAACTGA GTTTGTCAAG

[show][hide][copy]CDS

>Vigan.04G156700.01
ATGGCAGAGA ACGGCGACGG CGCCGAGGAG TACCTCTTCA AGGTCGTCCT CATCGGGGAC TCTGCGGTCG GCAAGTCCAA
CCTCCTGTCG CGCTTCGCGC GGAATGAGTT CGACAGCAAC TCCAAGGCCA CCATTGGGGT GGAGTTCCAG ACGCAGGTGG
TGGAGATCGA CGGCAAGGAG GTCAAGGCGC AGATCTGGGA CACTGCCGGC CAGGAGCGCT TCCGAGCCGT CACTTCTGCT
TACTACAGAG GCGCCGTTGG AGCGCTAGTC GTCTACGATA TCAGCAGGAG AGGCACCTTC GACGGCATCA AGCGATGGCT
CGAAGAGCTC ACTACTCAAA ACGACAGCAC CGTAGCAAGA ATGTTGGTGG GAAACAAATG CGACTTGGAG AATATTAGAG
AGGTGAGCAC AGAAGAAGGC AAAAATCTTG CAGAAGAAGA GGGCCTGTTC TTTATGGAGA CATCTGCACT CGATTCTACG
AATGTCCAAA CAGCTTTCGA GATTGTTATC CGTGAAATAT ACAACAATAT CAGTCGTAAA ACATTGAACT CTGATTCTTA
CAAGACTGAG TTGTCTGTGA ATCGAGTAAG CTTGGTTAAT GGGGCAGGAT CAAAGCAAGG TCTTTCTTGT TGTGCTCGAT
GA

[show][hide][copy]PROTEIN

>Vigan.04G156700.01
MAENGDGAEE YLFKVVLIGD SAVGKSNLLS RFARNEFDSN SKATIGVEFQ TQVVEIDGKE VKAQIWDTAG QERFRAVTSA
YYRGAVGALV VYDISRRGTF DGIKRWLEEL TTQNDSTVAR MLVGNKCDLE NIREVSTEEG KNLAEEEGLF FMETSALDST
NVQTAFEIVI REIYNNISRK TLNSDSYKTE LSVNRVSLVN GAGSKQGLSC CAR*