GBrowse Details

Vigan.04G139500.01

Basic Information:
Name: Vigan.04G139500.01
Multiple alignment
Variant Information
Position: Chr04:17199611..17202955 (+ strand)
Length: 3345
Functional Information:
Description: Similar to Ca2+/H+ exchanger. [O64455, Vigna radiata]
GO: Biological Process: cation transport (GO:0006812)
Biological Process: calcium ion transport (GO:0006816)
Biological Process: transmembrane transport (GO:0055085)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: cation transmembrane transporter activity (GO:0008324)
Molecular Function: calcium:hydrogen antiporter activity (GO:0015369)
InterPro: Calcium/proton exchanger (IPR004713)
Calcium/proton exchanger CAX (IPR004798)
Sodium/calcium exchanger membrane region (IPR004837)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.82,8.82,540.24,331.60,20.23,135.68,1.88,277.94
Arabidopsis thaliana homolog: AT2G38170.3, AT3G51860.1
Automatic updates:
Name: NM_001317320 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata vacuolar cation/proton exchanger 3-like (LOC106772184), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:17199611..17199762 (+ strand)
Length: 152
Type: five_prime_UTR
Position: Chr04:17199763..17200032 (+ strand)
Length: 270
Type: CDS
Position: Chr04:17200456..17200523 (+ strand)
Length: 68
Type: CDS
Position: Chr04:17200654..17200682 (+ strand)
Length: 29
Type: CDS
Position: Chr04:17200960..17201156 (+ strand)
Length: 197
Type: CDS
Position: Chr04:17201271..17201483 (+ strand)
Length: 213
Type: CDS
Position: Chr04:17201584..17201829 (+ strand)
Length: 246
Type: CDS
Position: Chr04:17201958..17202011 (+ strand)
Length: 54
Type: CDS
Position: Chr04:17202092..17202208 (+ strand)
Length: 117
Type: CDS
Position: Chr04:17202301..17202391 (+ strand)
Length: 91
Type: CDS
Position: Chr04:17202480..17202541 (+ strand)
Length: 62
Type: CDS
Position: Chr04:17202542..17202955 (+ strand)
Length: 414
Type: three_prime_UTR

>Vigan.04G139500.01 class=Sequence position=Chr04:17199611..17202955 (+ strand)
AACAAAAATA CATGCACACA CGTAGCTATC TATAGTAACT GCAAGAAGAT ACCCTCTGTA GTTTTTTTGG TTTATGCAGC
CAAAACCAAA GGCTCACTGC ATCACATTTT TTGGCTTGTG TTTCTTCTAG CTAAAACCTC CACATAACAA AAATGGCTTC
TCACCAACAC GAACCATGGC TACTGGAGAA CGGAAACCCG AAGGTCTTGA CCAGGGAAAT GAGACATGGT CGCACTGCGC
ATAGCAAGTC TTCCAACTCA CTTCGCAAGA AGTCTGATCG CACTCTTGTT TCTAAGGTTC CCTGTGCCAC TATCCGAAAC
ATACTTTTCA ACTTGCAAGA GGTTATTCTT GGCACCAAGC TTTCCATTCT CATCCCTGCC ATTCCTGCTG CCATTGTTGC
TGAGTACTGT GGCTTTGGAA GAGTGAGTTA ATATCTCTCA TTGCTCCATT CAACCTCCAA ACACATGTTT CTTTTATAAG
TTTTGTTCAC TGTGATCTTC AAATGACTAT CTATATCAAT CTTATTATGA AACATTTGCA AACAATTAAT TCAACATTCA
GTAAAGCTAT GAAAAGTTTT CTATAAACAC CATGGTCAAT CAAATGAACT ACTTTTTGAG TTTAAAACTA GTTGGATGTA
TTTGAATACG GCACGGAATT AAGTTATGAT TGAGGGCGGT TCTTGTTTAA AACATTAGTC GGTCACGTTC AAACTACTAT
AAAAATTCAT GAGTGTATGT TTCAATCAAT GGATTTTATG TTGCAAAATG ATTTCTCTAT TGTTAATCAT TTGTAGTTAT
ATTGCCTTAT ATATGACTAT TGACTGTTCT ATTATCTATG AACAGCCTTG GGTTTTCGTG TTGAGCTTGC TTGGACTTAC
CCCACTTGCT GAACGTGTGA GCTTCATAAC CGAGTAAGGA ACCTCCATGA ACTTGTTGCA CCATTTCTTT TTATCTCTTG
ATTATTTGTT ATGTTTTGTT TCTGGGTTGA TTGCTGATTC TAGCTCTACT TTTTCTGTTG GTGATGCCTT CAAAATACTG
CAGACAAGTT GCCTTCTACA CTGGTCCTAC AGGTATGAAT CATGAATGCA TCATCAATTT TGAAGAGTTT TCACAGAATT
AAAATTATCT TTACTGGTTA ATATTTAGAA CATAAATATA ACCATCAAGG ATCAAGACTC TTCTGACACT GTTGCACCAA
TCATAGTTTC TAGACAACTG GTTTTCGAGA CAAAACCATG TGCTATTTTT CTATATAAAT TGTTAAGCTA AGCTGCAATA
AAAAAGAGTT CACATGTTCT CAATTGTGGT ATCACCACAG CTAAATGTTT CACATGTTCT CAATTACAGT TGGAGGACTT
CTGAACGCTA CGTGTGGGAA TGTTACGGAG CTCATAATAG CAATATTTGC GCTTAGCAGT AACAAAATTG CTGTGGTCAA
GTATTCTCTG TTGGGTTCTA TTCTTTCAAA CCTTCTTCTG GTTCTTGGCA CCTCTCTATT ATGTGGTGGC ATTGCAAACC
TTAGAGTGGA ACAAAAATAT GATAGAGTAA GACTCTAAAA TCCACTTACA TTTTCTTCTT GTGTGTTTGT ATTTTTCATT
GTTCTTGGTG TTTTTTTTAG TAATGGAACA ACTAATGTTA ATTAAGAATT TACTTTACAG AGACAAGGAG ATGTGAACTC
ACTTATGCTG CTGTTGGCAT TGTTGTGCTA CTTACTTCCA ATGCTGTTCA AATATAGCGC TGCCTCAGCT GCTCTCACTG
TTGATCCTTC ACTCCACTTG TCTAGAGCTT CTAGCATTGT GATGCTGATT GCATATGTTG TTTACATAAT CTTTCAACTG
TGGACACACA GGCAACTATT TGAAGCTGAA GATGTAAGGT TTCTTGAATC ATGAAAATGT GAATTTGGTT TGCAATTAAC
TAATCTAATT CATGCCAATA TCTTAGAAGT ATTTAACATG GTGAATTGGT CAGGAGGATG AAGATGACAG CAATGGTTCA
GATGAACAAG CCGTCATTGG ACTCTGGAGT GGCATTGCTT GGCTGATTGG GATGACTGTG TTCATTGCTC TGTTGTCTGA
ATACGTGGTG GATACAATTG AGGATGCATC AGATTCATGG GGTTTGTCTG TGAGCTTCCT CAGCATAATC TTGCTACCAA
TAGTTGGCAA TGCAGCTGAA CATGCAGGAG CAGTCATATT TGCTTTCAAG AACAAGCTGG TGAGAACTTG ATAGTGTTAT
AAACTTCACA CTTCCTTTCA TTAAGCATAA TATTCTTAAT GGCCAACCAA TAAATGTTTT AAGAAAAATA TGAAATTCAT
AGAAACTAAA GTATGGTTTG TCCACAGGAC ATCTCATTGG GTGTTGCATT GGGTTCAGCA ACTCAGATTG CCATGTTTGT
GGTAAGTTTC TTCTTCTTTT GATGCAGTTT CTTCTTCTTT TTGTGCTTCT TTTGATGAGA GATTATGCAA CTAAAATATA
GGTCCCTTTG TGTGTGATCG TTGCTTGGAC TATGGGTGTC AAAATGGATT TGAACTTCAA CATCCTAGAG ACAGGTTCCG
TTGCTTTGGC AATAATAGTC ACAAGCTTTA CTTTACAGGT ATATTTAACA AAATTCAAGA GACAAAAACC TTATATTTTC
ATTCAATCTC CTAAGGAATA TAAGCGTTGA CAAAACCACT ATTTATATAG GATGGTACTT CTCACTACTT GAAAGGCCTT
GTTCTCCTGC TGTGCTACAT AGTTATTGGA GCTTGCTTCT TCGTACAAAG AACACCATTG AGTGAGCAAA ATATGTCAAA
TTTCAAAATG ATTACATACA ATATAAATTT GTGATTCATG CCTAAAATTT GATCACTTAT TTTTCACAGA CCAAGCTGAT
GCTACAAACG TCATTCCTAA AGCAGCCATT AATGCAGTTT TAAGTGCTTA GTGGGTAAGT TGCAACTTAT TGGCACATAA
AATCCTTCAG TGGGCATAAA AGTTAACTGG GAACTTGGAT TGCAGGCTTT GGCCTATTTT TGTCCTTTGC TGAGATGAAG
AATGGTGGCA TCCAAACCCA AAATCAAATC AAATGGATTG GTTATTGTTT CATTCTGATC ACTTCATATA TATCCATAAA
GAAAGGAGAA AAGAAGTTTG CAAGTATTTG CAAATGGAAC ACTGTGTGCA AGATCAATCA ATCATACGTG TGTTCTATCA
GAGAGTTGGT TTTTGATCTT GTGCTTCAGT AAATGCCAAT AAGTGGAGAT TGTTCTTGTT TGAGTTTGGT TTAGAAAGAA
TCTCTTTTCA GTTTGCAGAA TATCTCTTGT ATTTTTTAGT TTGCAGAATA TCTCTTGTAT TTTTT

>Vigan.04G139500.01
AACAAAAATA CATGCACACA CGTAGCTATC TATAGTAACT GCAAGAAGAT ACCCTCTGTA GTTTTTTTGG TTTATGCAGC
CAAAACCAAA GGCTCACTGC ATCACATTTT TTGGCTTGTG TTTCTTCTAG CTAAAACCTC CACATAACAA AAATGGCTTC
TCACCAACAC GAACCATGGC TACTGGAGAA CGGAAACCCG AAGGTCTTGA CCAGGGAAAT GAGACATGGT CGCACTGCGC
ATAGCAAGTC TTCCAACTCA CTTCGCAAGA AGTCTGATCG CACTCTTGTT TCTAAGGTTC CCTGTGCCAC TATCCGAAAC
ATACTTTTCA ACTTGCAAGA GGTTATTCTT GGCACCAAGC TTTCCATTCT CATCCCTGCC ATTCCTGCTG CCATTGTTGC
TGAGTACTGT GGCTTTGGAA GACCTTGGGT TTTCGTGTTG AGCTTGCTTG GACTTACCCC ACTTGCTGAA CGTGTGAGCT
TCATAACCGA ACAAGTTGCC TTCTACACTG GTCCTACAGT TGGAGGACTT CTGAACGCTA CGTGTGGGAA TGTTACGGAG
CTCATAATAG CAATATTTGC GCTTAGCAGT AACAAAATTG CTGTGGTCAA GTATTCTCTG TTGGGTTCTA TTCTTTCAAA
CCTTCTTCTG GTTCTTGGCA CCTCTCTATT ATGTGGTGGC ATTGCAAACC TTAGAGTGGA ACAAAAATAT GATAGAAGAC
AAGGAGATGT GAACTCACTT ATGCTGCTGT TGGCATTGTT GTGCTACTTA CTTCCAATGC TGTTCAAATA TAGCGCTGCC
TCAGCTGCTC TCACTGTTGA TCCTTCACTC CACTTGTCTA GAGCTTCTAG CATTGTGATG CTGATTGCAT ATGTTGTTTA
CATAATCTTT CAACTGTGGA CACACAGGCA ACTATTTGAA GCTGAAGATG AGGATGAAGA TGACAGCAAT GGTTCAGATG
AACAAGCCGT CATTGGACTC TGGAGTGGCA TTGCTTGGCT GATTGGGATG ACTGTGTTCA TTGCTCTGTT GTCTGAATAC
GTGGTGGATA CAATTGAGGA TGCATCAGAT TCATGGGGTT TGTCTGTGAG CTTCCTCAGC ATAATCTTGC TACCAATAGT
TGGCAATGCA GCTGAACATG CAGGAGCAGT CATATTTGCT TTCAAGAACA AGCTGGACAT CTCATTGGGT GTTGCATTGG
GTTCAGCAAC TCAGATTGCC ATGTTTGTGG TCCCTTTGTG TGTGATCGTT GCTTGGACTA TGGGTGTCAA AATGGATTTG
AACTTCAACA TCCTAGAGAC AGGTTCCGTT GCTTTGGCAA TAATAGTCAC AAGCTTTACT TTACAGGATG GTACTTCTCA
CTACTTGAAA GGCCTTGTTC TCCTGCTGTG CTACATAGTT ATTGGAGCTT GCTTCTTCGT ACAAAGAACA CCATTGAACC
AAGCTGATGC TACAAACGTC ATTCCTAAAG CAGCCATTAA TGCAGTTTTA AGTGCTTAGT GGGTAAGTTG CAACTTATTG
GCACATAAAA TCCTTCAGTG GGCATAAAAG TTAACTGGGA ACTTGGATTG CAGGCTTTGG CCTATTTTTG TCCTTTGCTG
AGATGAAGAA TGGTGGCATC CAAACCCAAA ATCAAATCAA ATGGATTGGT TATTGTTTCA TTCTGATCAC TTCATATATA
TCCATAAAGA AAGGAGAAAA GAAGTTTGCA AGTATTTGCA AATGGAACAC TGTGTGCAAG ATCAATCAAT CATACGTGTG
TTCTATCAGA GAGTTGGTTT TTGATCTTGT GCTTCAGTAA ATGCCAATAA GTGGAGATTG TTCTTGTTTG AGTTTGGTTT
AGAAAGAATC TCTTTTCAGT TTGCAGAATA TCTCTTGTAT TTTTTAGTTT GCAGAATATC TCTTGTATTT TTT

>Vigan.04G139500.01
ATGGCTTCTC ACCAACACGA ACCATGGCTA CTGGAGAACG GAAACCCGAA GGTCTTGACC AGGGAAATGA GACATGGTCG
CACTGCGCAT AGCAAGTCTT CCAACTCACT TCGCAAGAAG TCTGATCGCA CTCTTGTTTC TAAGGTTCCC TGTGCCACTA
TCCGAAACAT ACTTTTCAAC TTGCAAGAGG TTATTCTTGG CACCAAGCTT TCCATTCTCA TCCCTGCCAT TCCTGCTGCC
ATTGTTGCTG AGTACTGTGG CTTTGGAAGA CCTTGGGTTT TCGTGTTGAG CTTGCTTGGA CTTACCCCAC TTGCTGAACG
TGTGAGCTTC ATAACCGAAC AAGTTGCCTT CTACACTGGT CCTACAGTTG GAGGACTTCT GAACGCTACG TGTGGGAATG
TTACGGAGCT CATAATAGCA ATATTTGCGC TTAGCAGTAA CAAAATTGCT GTGGTCAAGT ATTCTCTGTT GGGTTCTATT
CTTTCAAACC TTCTTCTGGT TCTTGGCACC TCTCTATTAT GTGGTGGCAT TGCAAACCTT AGAGTGGAAC AAAAATATGA
TAGAAGACAA GGAGATGTGA ACTCACTTAT GCTGCTGTTG GCATTGTTGT GCTACTTACT TCCAATGCTG TTCAAATATA
GCGCTGCCTC AGCTGCTCTC ACTGTTGATC CTTCACTCCA CTTGTCTAGA GCTTCTAGCA TTGTGATGCT GATTGCATAT
GTTGTTTACA TAATCTTTCA ACTGTGGACA CACAGGCAAC TATTTGAAGC TGAAGATGAG GATGAAGATG ACAGCAATGG
TTCAGATGAA CAAGCCGTCA TTGGACTCTG GAGTGGCATT GCTTGGCTGA TTGGGATGAC TGTGTTCATT GCTCTGTTGT
CTGAATACGT GGTGGATACA ATTGAGGATG CATCAGATTC ATGGGGTTTG TCTGTGAGCT TCCTCAGCAT AATCTTGCTA
CCAATAGTTG GCAATGCAGC TGAACATGCA GGAGCAGTCA TATTTGCTTT CAAGAACAAG CTGGACATCT CATTGGGTGT
TGCATTGGGT TCAGCAACTC AGATTGCCAT GTTTGTGGTC CCTTTGTGTG TGATCGTTGC TTGGACTATG GGTGTCAAAA
TGGATTTGAA CTTCAACATC CTAGAGACAG GTTCCGTTGC TTTGGCAATA ATAGTCACAA GCTTTACTTT ACAGGATGGT
ACTTCTCACT ACTTGAAAGG CCTTGTTCTC CTGCTGTGCT ACATAGTTAT TGGAGCTTGC TTCTTCGTAC AAAGAACACC
ATTGAACCAA GCTGATGCTA CAAACGTCAT TCCTAAAGCA GCCATTAATG CAGTTTTAAG TGCTTAG

>Vigan.04G139500.01
MASHQHEPWL LENGNPKVLT REMRHGRTAH SKSSNSLRKK SDRTLVSKVP CATIRNILFN LQEVILGTKL SILIPAIPAA
IVAEYCGFGR PWVFVLSLLG LTPLAERVSF ITEQVAFYTG PTVGGLLNAT CGNVTELIIA IFALSSNKIA VVKYSLLGSI
LSNLLLVLGT SLLCGGIANL RVEQKYDRRQ GDVNSLMLLL ALLCYLLPML FKYSAASAAL TVDPSLHLSR ASSIVMLIAY
VVYIIFQLWT HRQLFEAEDE DEDDSNGSDE QAVIGLWSGI AWLIGMTVFI ALLSEYVVDT IEDASDSWGL SVSFLSIILL
PIVGNAAEHA GAVIFAFKNK LDISLGVALG SATQIAMFVV PLCVIVAWTM GVKMDLNFNI LETGSVALAI IVTSFTLQDG
TSHYLKGLVL LLCYIVIGAC FFVQRTPLNQ ADATNVIPKA AINAVLSA*