GBrowse Details

Vigan.04G115100.01

Basic Information:
Name: Vigan.04G115100.01
Multiple alignment
Variant Information
Position: Chr04:12891650..12895324 (- strand)
Length: 3675
Functional Information:
Description: Similar to elongation factor P-like. [XP_004492556.1, Cicer arietinum]
GO: Biological Process: translational elongation (GO:0006414)
Biological Process: peptide biosynthetic process (GO:0043043)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: translation elongation factor activity (GO:0003746)
InterPro: Translation elongation factor P/YeiP, central (IPR001059)
Translation protein SH3-like domain (IPR008991)
Translation elongation factor P (IPR011768)
Nucleic acid-binding, OB-fold (IPR012340)
Translation elongation factor, KOW-like (IPR013185)
Translation elongation factor P/YeiP, conserved site (IPR013852)
Ribosomal protein L2 domain 2 (IPR014722)
Elongation factor P, C-terminal (IPR015365)
Translation elongation factor P/YeiP (IPR020599)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.05,2.72,9.62,16.35,5.72,7.55,3.17,4.79
Arabidopsis thaliana homolog: AT3G08740.1
Automatic updates:
Name: NM_001249862 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max elongation factor P (LOC100306051), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250004 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500109 (LOC100500109), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:12891650..12891883 (- strand)
Length: 234
Type: three_prime_UTR
Position: Chr04:12891884..12892002 (- strand)
Length: 119
Type: CDS
Position: Chr04:12892451..12892532 (- strand)
Length: 82
Type: CDS
Position: Chr04:12893246..12893347 (- strand)
Length: 102
Type: CDS
Position: Chr04:12893606..12893683 (- strand)
Length: 78
Type: CDS
Position: Chr04:12894725..12894831 (- strand)
Length: 107
Type: CDS
Position: Chr04:12894918..12894995 (- strand)
Length: 78
Type: CDS
Position: Chr04:12895071..12895218 (- strand)
Length: 148
Type: CDS
Position: Chr04:12895219..12895324 (- strand)
Length: 106
Type: five_prime_UTR

>Vigan.04G115100.01 class=Sequence position=Chr04:12891650..12895324 (- strand)
CGTAAATTGA GCCAAAGTGG TGTTCAGGTG GCGAAACAGA AGAAAGTCTC TTATCTTCTT TGTAAGAACA ACACCAAGAA
AGAAGCATTT ACAGTTTGGA GCAACAATGG TGGCGGGAAT CGCAAACTTG AAGCTTAACC TTTCGGCATT TTCCTCTTCA
ATGTCGAGTT TCACAGCTTC CTCCTCCTCC TCCTCTTCGT TCCCCTCTCT TCTTCCAATG CGAACCCCTT CTTCTTCTAA
ACCCCGATTT TTCAGTGAGT CACCTCGTTC CTTTCCACGC TTTCTCTGAC CATGTTCCAC TCTTTGCTGA CGTGTGCCCT
TTCTTTCAGG AATTTACGCC TTGACCAGCA ACGACATCAA GGTGGGCACC AACCTCGAAG TCGATGGTGC TCCTTGGCGC
GTGATAGGTA TTTTTTTTTT GCCGCACTTG TGAACGGTGG TTTTGGCTCT GGATTGTGAC GGTTCTTGAC TTGGCTTGCG
TTGCACGCTT TAGAATTTCT CCATGTTAAG CCTGGAAAAG GTGCGGCGTT TGTGAGGACC AAGTTGAAGA ATTATATCAC
GGGGAACACG GTGGAGAAAA CATTTAGAGC TGGAAGCTCG GTAATGAACA TAAAATTGCA ATGCTTCTGC TTAATCACTG
CGTTTGATTT TATTTATAGG TTCAATAGAT GACTGTTTGG GTTCTGTCTT TAGTTTTGGG GATTGAGGGA GATAAGTTTT
GTTTTTTGTT GGAAAGTCCG TTTAATTGTC ATCACCCATG GCTCTCCTTA ATTGCGACCT GTGGCAGTGG TTGGTTGTCA
ATGACTCAGA GGATTACCTC TGGAGTGTTG ACTGGAACGG TTGATTGAAT TGTTATAGTG CATGTTTGGA TATCCACCAC
TGTATTTAAT TTGTGTTCCG ATCTTAAGTT GGTATTATGT TAGACTCATG GCGTTTGAGC TATTTTTAAC TTTGGCTTTT
GTGGGCATTC GTGGGCATTT GTGGTTGTCC TTAAAAGTTG TTTTAGTGAG TCAAGAAAAG ATGTTTATAA ACTATCCTTG
AACTTGATTC TTAAGCAATA CGAGGTTGTT TTGAGGGATG GAATAATTTG ATTTCTAGAT TCAAAGGAAG ATCAATTGAG
TAGTGTCTTT TGGGGCTAGA GATGGAAGGA GATAGGATTA TCCCTGGTAA GTCAGCTTAA GAGTTACCAC CTTCGCTTCG
CCTTAACTGT GGCTTATAAA GTTTGTTGTC AGTGTCTCAA AAATAACTAT GTATGAAAAA GTTGACTACA AATGTGAAGT
GAAACATCTT AGTGTGCAAG AGTAATTACT CTCAAGGATT GAGATCCCGT GTCAAGTAGA GAGATGATAT CACCAATGTA
GCTGTTGTCT TTATGAAACA TGGGTTGTCC TTACTTTAAA TCACCAATGT AGAGGAGTTT CTCTACTGAA AAAAAGTTCT
AGATTTCCAG TATGAAAGAT CTTAAAAACA CTTTTACTTT GTATCCAAAT AGTCCCGAAG CTGACATTCC AAGACTTATG
CTTTTTGTTA CCTTTCTCCA TTAAAAAATA AAGATGGGTG AGACTATTTT TCAGGTAGTT GCTAAAAATT TGGATTTTTG
GGTTTACCTT TTCTCATTTC ATTTGTTCCC TTTTCTGACA GATTGACCTA GCAGATGTAT ACAAGGAAAC AAAGCAGTTC
ACGTATAAAG ATGGTGCTCA ATTTGTCTTC ATGGACTTGG TATTATCTGC GACGCATGAT TATATAAACT AACAAATTAT
AGATATGTAC ATTTTGCTGT TTCTGACTAA ATATAATCTC TACCTATGGG TTACGAACTC AAGACTATTG TGAAGATTTA
TAAAATAATT CAATTAGGTT TATTCTCTCT TTTCCAATAG TTCTTTTTCA TTTATTACTT GCAATTAGTT AACTAACGAA
TAATGTACTT AGTTTTGCCA TTGCCTCTGT TTAATTTGCT TGTTTTAATT TTCGCAGAGT ACATACGAGG AGTTTCGTCT
GGGTGAAAAG GAAATCGGAG ACAGAACAAA GTGGCTAAAA GAAGGAATGG ACTGCAATTT GCTGTTATGG AATGGAAAAG
TAACAATGTC CTCTCATAAT ATATTATGCC TTGCAGTGTC TCAGACTTTT AATTTTCCAG ACCACTTATG ATAAAAGTTA
TAGGACAAGA AGTGGCCTGG TTCTCAAATT TTTATTTATT TAAATATCTT TAAATTTGTT GGTTGCAACT TTTATCCACT
TTAATGGTGT TTCACTTTTA TAGAAGGGCT GCATTTTTTT TTCCTGAAAG CTTGAATGAT CTTGGTCTGC AGTGGTACAT
ACATGTTATG GAGTTATATA TTTTTATATA ATTATACTCT TGAATTTTTG TTTCTCCCAA ATGCTGTTTT GTCCAGGCTG
CTGAGATTAA ACTTAATTGT TTTTTTCACG CTTGATCGGT TCAAAGTGTG CTCTAATAGT TATTAGTGGT TTTAGATGTG
CTTTGCATGG TAACTAAGAT TCTTGCTTAT GCATAGATTA GGAGGTACAA GGCTTCTCTA ACATGACTTT ATTTTTTCTG
TCCAGAGTGA GTAGTGTGGT TTTAGTATAC GTCCTTGATC TGATTTAAAG TATACTGTGA TCTTAACCTA CTATCGTCTA
AGAGTAGAGA CACCTTTGCA TGATCACTTC AGTGACAAAA TCACGCTAGA GGAGCATTTT CTGATTAGCA GTATTGCATT
TAAAAATAAA AAGATATGTG CAGTTGCTGC AACTGTTCTT GTTTAACAGG TTGTCACTTG ATATTTTTTC AGGTTATTGA
TGTTGATCTC CCTATCACAG TTAAGCTTAC TGTAGTTGAC GTGGACCCAG GACTTAAGGG TGACACAGCC CAAGGTGATA
TACCATTTTG TTTATACTGC AAACTTCTAC TATTATGACC AATTTATATT GCAAACATTG TAAACCATAT TTGTAGCCAA
AAAAAATTGC TACAATAAAA TGAAAATATT GTCTCTCATC AGCTAGAAGA TGATCCTTAT AATGGTCTTT ATGGATCTGT
CAAGCGATGA GTTCCTCTAA ATGCATAATT CACAATTTGG CATCAGAAAT CCATTAAGAA AAAGCAGTTT GAATAGTTTT
ATTGTTGGTC TTATAAAAGC TAAGATGTAT TGAATAGTGG TCAGGATAGG CTTATTAATC AAACCTGTTA TCAAAGGGAA
CACGGTGTGA TACCCCATTA TGATATTTAC TGTTTGTTTC CCTCCATTGT CCTGTATAAA TTTTCTTCTT ACCTTTCCTT
GTAGAACTTA CTAAGTCTCT GATGACAAAA TTTGATTGAC AGGTGGAACA AAACCGGCCA CACTCGACAC TGGCGCTGTT
GTCAATGTCC CACTTTTTGT AAATGTCGGT GATGAAATAT TAGTTGATTC AAGAACTGGA CAGTACATGA GCCGTGCTTA
AGATTTCGCA TCAAATTTTG TAATCCAAAT CCCGAGAATT CTTGTTCATT TTGTTCTTTT AACTTTTTAG GAAATAATTT
ACCAATGAAG ATGGATTACG TTCATTAACA TTAGCAAACT GGCAGTCTTC TATAACATTG AGTTAAAATT GTGTTGTAAT
ATATTTGCGA TACTCAAGTT CTTACAGTGA TTCGGCTATA ATTATGGTAC ATAACGTTCT TACAGAAAAA ACCCA

>Vigan.04G115100.01
CGTAAATTGA GCCAAAGTGG TGTTCAGGTG GCGAAACAGA AGAAAGTCTC TTATCTTCTT TGTAAGAACA ACACCAAGAA
AGAAGCATTT ACAGTTTGGA GCAACAATGG TGGCGGGAAT CGCAAACTTG AAGCTTAACC TTTCGGCATT TTCCTCTTCA
ATGTCGAGTT TCACAGCTTC CTCCTCCTCC TCCTCTTCGT TCCCCTCTCT TCTTCCAATG CGAACCCCTT CTTCTTCTAA
ACCCCGATTT TTCAGAATTT ACGCCTTGAC CAGCAACGAC ATCAAGGTGG GCACCAACCT CGAAGTCGAT GGTGCTCCTT
GGCGCGTGAT AGAATTTCTC CATGTTAAGC CTGGAAAAGG TGCGGCGTTT GTGAGGACCA AGTTGAAGAA TTATATCACG
GGGAACACGG TGGAGAAAAC ATTTAGAGCT GGAAGCTCGA TTGACCTAGC AGATGTATAC AAGGAAACAA AGCAGTTCAC
GTATAAAGAT GGTGCTCAAT TTGTCTTCAT GGACTTGAGT ACATACGAGG AGTTTCGTCT GGGTGAAAAG GAAATCGGAG
ACAGAACAAA GTGGCTAAAA GAAGGAATGG ACTGCAATTT GCTGTTATGG AATGGAAAAG TTATTGATGT TGATCTCCCT
ATCACAGTTA AGCTTACTGT AGTTGACGTG GACCCAGGAC TTAAGGGTGA CACAGCCCAA GGTGGAACAA AACCGGCCAC
ACTCGACACT GGCGCTGTTG TCAATGTCCC ACTTTTTGTA AATGTCGGTG ATGAAATATT AGTTGATTCA AGAACTGGAC
AGTACATGAG CCGTGCTTAA GATTTCGCAT CAAATTTTGT AATCCAAATC CCGAGAATTC TTGTTCATTT TGTTCTTTTA
ACTTTTTAGG AAATAATTTA CCAATGAAGA TGGATTACGT TCATTAACAT TAGCAAACTG GCAGTCTTCT ATAACATTGA
GTTAAAATTG TGTTGTAATA TATTTGCGAT ACTCAAGTTC TTACAGTGAT TCGGCTATAA TTATGGTACA TAACGTTCTT
ACAGAAAAAA CCCA

>Vigan.04G115100.01
ATGGTGGCGG GAATCGCAAA CTTGAAGCTT AACCTTTCGG CATTTTCCTC TTCAATGTCG AGTTTCACAG CTTCCTCCTC
CTCCTCCTCT TCGTTCCCCT CTCTTCTTCC AATGCGAACC CCTTCTTCTT CTAAACCCCG ATTTTTCAGA ATTTACGCCT
TGACCAGCAA CGACATCAAG GTGGGCACCA ACCTCGAAGT CGATGGTGCT CCTTGGCGCG TGATAGAATT TCTCCATGTT
AAGCCTGGAA AAGGTGCGGC GTTTGTGAGG ACCAAGTTGA AGAATTATAT CACGGGGAAC ACGGTGGAGA AAACATTTAG
AGCTGGAAGC TCGATTGACC TAGCAGATGT ATACAAGGAA ACAAAGCAGT TCACGTATAA AGATGGTGCT CAATTTGTCT
TCATGGACTT GAGTACATAC GAGGAGTTTC GTCTGGGTGA AAAGGAAATC GGAGACAGAA CAAAGTGGCT AAAAGAAGGA
ATGGACTGCA ATTTGCTGTT ATGGAATGGA AAAGTTATTG ATGTTGATCT CCCTATCACA GTTAAGCTTA CTGTAGTTGA
CGTGGACCCA GGACTTAAGG GTGACACAGC CCAAGGTGGA ACAAAACCGG CCACACTCGA CACTGGCGCT GTTGTCAATG
TCCCACTTTT TGTAAATGTC GGTGATGAAA TATTAGTTGA TTCAAGAACT GGACAGTACA TGAGCCGTGC TTAA

>Vigan.04G115100.01
MVAGIANLKL NLSAFSSSMS SFTASSSSSS SFPSLLPMRT PSSSKPRFFR IYALTSNDIK VGTNLEVDGA PWRVIEFLHV
KPGKGAAFVR TKLKNYITGN TVEKTFRAGS SIDLADVYKE TKQFTYKDGA QFVFMDLSTY EEFRLGEKEI GDRTKWLKEG
MDCNLLLWNG KVIDVDLPIT VKLTVVDVDP GLKGDTAQGG TKPATLDTGA VVNVPLFVNV GDEILVDSRT GQYMSRA*