GBrowse Details

Vigan.04G077300.01

Basic Information:
Name: Vigan.04G077300.01
Multiple alignment
Variant Information
Position: Chr04:7510661..7513374 (+ strand)
Length: 2714
Functional Information:
Description: Similar to Uncharacterized protein. [I1L6I4, Glycine max]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:224.33,70.02,44.82,48.40,32.76,52.42,59.82,26.60
Automatic updates:
Name: NM_001255889 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquitin-conjugating enzyme E2 5-like (LOC100805356), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:7510661..7510783 (+ strand)
Length: 123
Type: five_prime_UTR
Position: Chr04:7510784..7510827 (+ strand)
Length: 44
Type: CDS
Position: Chr04:7510937..7511016 (+ strand)
Length: 80
Type: CDS
Position: Chr04:7511553..7511667 (+ strand)
Length: 115
Type: CDS
Position: Chr04:7511768..7511820 (+ strand)
Length: 53
Type: CDS
Position: Chr04:7511925..7512053 (+ strand)
Length: 129
Type: CDS
Position: Chr04:7512936..7513066 (+ strand)
Length: 131
Type: CDS
Position: Chr04:7513067..7513374 (+ strand)
Length: 308
Type: three_prime_UTR

>Vigan.04G077300.01 class=Sequence position=Chr04:7510661..7513374 (+ strand)
TTTTACTTGT TTTCAGCTTG CACAAGAGTC TCCAATCTTA ACTTCTCTCT CCACTTGCCA AAGGAAAGGC TAAAGAGGAG
AAGGAAAAAG GCAAAGCAAG AGCCGACCAA CACACACAGA ACCATGTCTT CCCCAAGCAA GCGCAGAGAG ATGGACTTGA
TGAAACTGTT AATCCTTTCT TTCCTCAATT CCATCAAAGT TTTAATCTTT TTCTAATGGT CTCTTTTCCC CTTCTCATTC
TGATTATGGG TCTTCTTTAT CTTTTCCTTT CCCTAGGATG ATGAGTGATT ACAAGGTGGA GATGATTAAT GATGGAATGC
AAGAATTTTA TGTGCAATTC CATGGACCCA ATGGCAGTCA GTTCCCTTTC CTCCCTCTCC TTTCTTTCTT GCTTTCGTAC
TTCTCTTCAA GTTGGATGCT TTGCTTTTGT CGGTCTTTTC CCTTTTTCTT GCTGTCTTAA TTTTGGAGAT AGCTGTTTGA
CCTTGGTAGC TTTAGATTTG TGTAGCTACA AGATGATATC GGTACCTTTT TATGCCGCTT GTGTTTGTTG TGTTAATTGC
TATGTGTTTT CTGTGGATTC TGTTCATAGA CTTTTGGACA ACAAAATTTT TTTTTTCGCT CTTTAATTTT GCAAATGATT
TTTGTACTTT CTTATTGATT TCCCTTTTGC TTGTTGTGAA GTTGTTAGTG TGAATACGGA ACTGATGTCT AGCCAGAAAG
GGATTGGTGT GAGCTAAATT TTGTTGGTTT TTACCTGTAT CAGTTTTTGC ACCATAGTTA TTGATTTCAC CTTTGATTGT
TGTTTCGGCC TGGTTTGAGA TCCTTATCAA ATTTTTTTTC ATGGAGCTTC ATTTTTCTAT AGTCTTCTTA TCTGTTGGAT
GGCTTTTGGC AGGTCCTTAT CATGGTGGTG TGTGGAAAGT GAGAGTTGAG TTGCCTGATG CTTATCCTTA TAAATCTCCT
TCCATTGGCT TTGTCAACAA GATCTATCAC CCAAATGTTG ATGAGATGTA AGCAAATAGT AGTAATGTTC TGACATTTGA
GCGACTTATT ATGTATTTGA GTGACTTATT GTGTGTCAGC GTGTCTGATT GATAACAATA ATCTCAGGTC AGGATCAGTT
TGTCTGGATG TTATCAATCA AACCTGGAGT CCCATGTTTG GTAATGAAAT TCAATAAATT TTCTGAGAAA ATGTGTGGAT
TATTCAAAGT TGAATATTTT GACTTGTTCT TGTTTGTCAA ACAAAACTAC GTTCTTCCTT CCAGATCTTG TTAATGTGTT
TGAGGTGTTT CTACCACAAC TTCTGCTGTA TCCCAATCCA TCAGACCCCT TGAATGGAGA AGCTGCAGCT TTAATGATGC
GTGACCGATC TGCTTATGAG ATAAGGGTTA AAGGTATTCA TCTGTTCTGC TCATTTTCTA AAACGGCATT TCTTGCAATA
GTTTATATAC ACTCATTTCT CTGTATGTGT CACAGACTTG CTATGTTTTC TTTGCAGTTT TTTTCTTTAG ATTTTTCTCA
TGCCAGCCAC TGTCAATATC TAAACCAACT TGGACATTTG CATTAACATT TTCGACCTTT GGGTAGTAGA TGTAGAGCTA
CCATCATTAC TCAGTGAATT TGATGAGCAT ATGCTTGAAT GTACACTCAA ACAATCAGAA CTTCATTTTT AAATAATTCT
TGACCTCATT CAGCTATCTT ATTAATATTA TTAAAACAAA TTGCTGCTCT TCTTAACTGC ATTATAAATT TTTAACATCT
CATGTTCTGA TCCTTTAACA GAACTGATTT TGTTGACAGT TGCCACCATT ATCATGTTAC TGCCTTTTAT GATACCATCA
AATCCTTAAC ATAAAAGTGA GGCATGAAAA CAAGAAAGGA ATGTCTGTAC TCTAGTGTTC AGACAGGTGG TTAATAAAGA
AAAAGAGGAA ATAGGGTGTA ATGAAATGGA ATTATACTGC GTTTTTGTTT GAATTGTTTT AAACAAGGAT GAAAGGAAGC
CAAACCTAAT GAAATGCACT CCATTTCATG CTTTCAAGTA TCTATGGACA ATGAAGTAGT AACTTTATTA CATTTCATTT
TTTGCTGCAT ACCATTAGAC ATCCAAAAGT ACAGCTGTGT TTATCTAACT TGTTAGACTG TATCACGTCC AAGACAATTA
ATCTAGCTTT GAAACCTTAT CAATCTGTGA TTTTTATATT TAGAACCAAT TAAGTTTTTC TTTTTTGCTC AATTCATACA
TGATAGTGAT AATGTGTTTT GGGCTTGAAT GTCAGAGTAC TGTGAGAAGT ATGCTAAGCC TGAAGACATA GGGGAAGTCA
CAGAAGAGAA ATCCAGTGAT GAGGAAATGA GTGAAGATGA ATCTGATTCT AGTGATGAGC AGGTTGTTGG TAAAGCAGAC
CCCTAGCTTT GCATGCATGT CATGTTCTTA ACATTGTATT TTATCTGTAA ATGATGTTCT ATTTGTGTTA ATTTACCTCA
CCACATATGA ACCTGTTATG GATAAGGGGG AAAAGTCTCC TTCCTTCTAT TCTAGTTTCC TGTCGCTGTA AATAAAGTAC
CATTGATTTC CTGATGCAAT TCTATTTCAT GTTTAGCTCA CTTTCAAGTC AGTGTGCTGT TTAGCCATGA TAATTTAATT
AAGAATGTAG CACAACATGA CACTCTTTGT ATTGGGTTAA TGTTTCTTCC AATAAATTAT GTGAATTTGT TCTC

>Vigan.04G077300.01
TTTTACTTGT TTTCAGCTTG CACAAGAGTC TCCAATCTTA ACTTCTCTCT CCACTTGCCA AAGGAAAGGC TAAAGAGGAG
AAGGAAAAAG GCAAAGCAAG AGCCGACCAA CACACACAGA ACCATGTCTT CCCCAAGCAA GCGCAGAGAG ATGGACTTGA
TGAAACTGAT GATGAGTGAT TACAAGGTGG AGATGATTAA TGATGGAATG CAAGAATTTT ATGTGCAATT CCATGGACCC
AATGGCAGTC CTTATCATGG TGGTGTGTGG AAAGTGAGAG TTGAGTTGCC TGATGCTTAT CCTTATAAAT CTCCTTCCAT
TGGCTTTGTC AACAAGATCT ATCACCCAAA TGTTGATGAG ATGTCAGGAT CAGTTTGTCT GGATGTTATC AATCAAACCT
GGAGTCCCAT GTTTGATCTT GTTAATGTGT TTGAGGTGTT TCTACCACAA CTTCTGCTGT ATCCCAATCC ATCAGACCCC
TTGAATGGAG AAGCTGCAGC TTTAATGATG CGTGACCGAT CTGCTTATGA GATAAGGGTT AAAGAGTACT GTGAGAAGTA
TGCTAAGCCT GAAGACATAG GGGAAGTCAC AGAAGAGAAA TCCAGTGATG AGGAAATGAG TGAAGATGAA TCTGATTCTA
GTGATGAGCA GGTTGTTGGT AAAGCAGACC CCTAGCTTTG CATGCATGTC ATGTTCTTAA CATTGTATTT TATCTGTAAA
TGATGTTCTA TTTGTGTTAA TTTACCTCAC CACATATGAA CCTGTTATGG ATAAGGGGGA AAAGTCTCCT TCCTTCTATT
CTAGTTTCCT GTCGCTGTAA ATAAAGTACC ATTGATTTCC TGATGCAATT CTATTTCATG TTTAGCTCAC TTTCAAGTCA
GTGTGCTGTT TAGCCATGAT AATTTAATTA AGAATGTAGC ACAACATGAC ACTCTTTGTA TTGGGTTAAT GTTTCTTCCA
ATAAATTATG TGAATTTGTT CTC

>Vigan.04G077300.01
ATGTCTTCCC CAAGCAAGCG CAGAGAGATG GACTTGATGA AACTGATGAT GAGTGATTAC AAGGTGGAGA TGATTAATGA
TGGAATGCAA GAATTTTATG TGCAATTCCA TGGACCCAAT GGCAGTCCTT ATCATGGTGG TGTGTGGAAA GTGAGAGTTG
AGTTGCCTGA TGCTTATCCT TATAAATCTC CTTCCATTGG CTTTGTCAAC AAGATCTATC ACCCAAATGT TGATGAGATG
TCAGGATCAG TTTGTCTGGA TGTTATCAAT CAAACCTGGA GTCCCATGTT TGATCTTGTT AATGTGTTTG AGGTGTTTCT
ACCACAACTT CTGCTGTATC CCAATCCATC AGACCCCTTG AATGGAGAAG CTGCAGCTTT AATGATGCGT GACCGATCTG
CTTATGAGAT AAGGGTTAAA GAGTACTGTG AGAAGTATGC TAAGCCTGAA GACATAGGGG AAGTCACAGA AGAGAAATCC
AGTGATGAGG AAATGAGTGA AGATGAATCT GATTCTAGTG ATGAGCAGGT TGTTGGTAAA GCAGACCCCT AG

>Vigan.04G077300.01
MSSPSKRREM DLMKLMMSDY KVEMINDGMQ EFYVQFHGPN GSPYHGGVWK VRVELPDAYP YKSPSIGFVN KIYHPNVDEM
SGSVCLDVIN QTWSPMFDLV NVFEVFLPQL LLYPNPSDPL NGEAAALMMR DRSAYEIRVK EYCEKYAKPE DIGEVTEEKS
SDEEMSEDES DSSDEQVVGK ADP*