GBrowse Details

Vigan.04G069200.01

Basic Information:
Name: Vigan.04G069200.01
Multiple alignment
Variant Information
Position: Chr04:6612024..6613630 (+ strand)
Length: 1607
Functional Information:
Description: Similar to Photosystem I reaction center subunit XI. [T2DNP5, Phaseolus vulgaris]
GO: Biological Process: photosynthesis (GO:0015979)
Cellular Component: photosystem I (GO:0009522)
Cellular Component: photosystem I reaction center (GO:0009538)
InterPro: Photosystem I PsaL, reaction centre subunit XI (IPR003757)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:8.70,0.56,197.51,2215.19,1.06,572.53,6.53,267.95
Arabidopsis thaliana homolog: AT4G12800.1
Automatic updates:
Name: NM_001249348 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500317 (LOC100500317), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Name: NM_001249939 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527240 (LOC100527240), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:6612024..6612512 (+ strand)
Length: 489
Type: five_prime_UTR
Position: Chr04:6612513..6612665 (+ strand)
Length: 153
Type: CDS
Position: Chr04:6612734..6613225 (+ strand)
Length: 492
Type: CDS
Position: Chr04:6613226..6613630 (+ strand)
Length: 405
Type: three_prime_UTR

>Vigan.04G069200.01 class=Sequence position=Chr04:6612024..6613630 (+ strand)
ATAATGTTAT TGAAACACAT AAAATGCATT CCAAAATAAA ACTTTCAAGA TAAAGAACGA GTTTCTTTTG CGAAGGAGTT
GTCCTTCTTT TCTCTTCTTC CTCTTTAACA AGCAGTAATT GTGAGATGAT ATAACAGGAA GGGTAGTTTA GTGATTCTAT
CTTAGAAAGG AGTGTGGTTA ATAAGAGTGG GGTGGAGAAA GAAAAAAGGA AGTGGAAGTT TAGTCTGTTG AGGTGCGAAG
TGATGATGGG TTGAAAGAAG CATGAAGTGG GCCTGGAAGA TGGGCCCGGA AAGAGGTGAG GAGAAGATAA AAATATGAAG
ATTGAAAGGT TGGGTTTTGG ATAAGGGATA AGGTTTTGAT ATGCATATCA ACCAATGGGA TGAGAGGGGG TTCAAGAGCC
ACAAGCTTGA TGTTGCAGTG AGAGATGAAA GTACTTAGCC AGTTCAGTTC CTGAATTGGG ACAGTCTCTC TTCTACAAAC
TCTCTCGTCA TGGCAGCTTC TTCTCCAATG GCAATCCAAC TCAAGTCCTC CTTCACTAGG ACTCTTGTCT CACCCAAGGG
TCTCTCTTCC TCTTCTCCAC TTCCCCTCTA CCCTTCTAGA AGACACTCCA CCTTCACTGT TAAGGCCATC CAATCAGAAA
AGGTATTCTC TTTTTTAATA TTCATAATAA TCAACACATT CATTTTCTCA TTTTATCGAT TTCCTGGCAG CCAACGTATC
AAGTCATTCA GCCCATCAAC GGTGACCCAT TCATCGGAAG TCTCGAAACG CCGGTAACAT CCAGCCCTTT GATCGCCTGG
TACCTCTCCA ACCTCCCTGC TTACAGGACC GCAGTCAGCC CACTCCTCAG AGGCATCGAA GTGGGCCTGG CCCACGGCTA
CCTCCTCGTG GGCCCCTTCG TGAAGGCCGG CCCTCTCAGG AACACCGAGT ACGCGGGCGC AGCGGGCTCG CTCGCTGCCG
GTGGGCTTGT CGCGATCCTG AGCATCTGCC TCACAATCTA CGGGATCTCA TCGTTCAACG AAGGAGACGC ATCCACGGCC
CCTTCCCTGA CCTTAACGGG CCGCAAGAAG CAGCCCGATC AGCTCCAGAC CGCCGACGGA TGGGCCAAGT TCACCGGGGG
CTTCTTCTTC GGAGGCATTT CGGGTGTTAT TTGGGCCTAC TTCCTCCTCT ACGTCTTGGA CCTTCCTTAC TACATCAAGT
GATTTGTTTC TCTCTCTCTT TTATTAATTC ATTCTCTATG AATGGACAGT GAATGAATGA AGAGTTATTT GTGCAATAGA
GATGCATGTA AATGATGATG TATTTTATGA CTCTCAACGT GTCACAAATG CTAAATTCTC TCTCTTATTC TTGCCATTTC
TTAATAGCTT TTGCTATTAC ATATACATGC ATGGATGATG AAACCCTAAC TTGTTAACAC GAACTCTTCA AGACTTTAAG
TATTACAACT TCGTGGATTT ATAGGATCGA GAAAATTAAA ATGAATCATG ATTAGTTCGT GGCAAGGTTT GTGTTTTATT
ACTTATTTTC ACATATTGAC GTTGGTTTTA ATTATAAATT TACATAGAAA CTCAACAAGA TAGTAAATTG AAGCACCAAT
ATATATA

>Vigan.04G069200.01
ATAATGTTAT TGAAACACAT AAAATGCATT CCAAAATAAA ACTTTCAAGA TAAAGAACGA GTTTCTTTTG CGAAGGAGTT
GTCCTTCTTT TCTCTTCTTC CTCTTTAACA AGCAGTAATT GTGAGATGAT ATAACAGGAA GGGTAGTTTA GTGATTCTAT
CTTAGAAAGG AGTGTGGTTA ATAAGAGTGG GGTGGAGAAA GAAAAAAGGA AGTGGAAGTT TAGTCTGTTG AGGTGCGAAG
TGATGATGGG TTGAAAGAAG CATGAAGTGG GCCTGGAAGA TGGGCCCGGA AAGAGGTGAG GAGAAGATAA AAATATGAAG
ATTGAAAGGT TGGGTTTTGG ATAAGGGATA AGGTTTTGAT ATGCATATCA ACCAATGGGA TGAGAGGGGG TTCAAGAGCC
ACAAGCTTGA TGTTGCAGTG AGAGATGAAA GTACTTAGCC AGTTCAGTTC CTGAATTGGG ACAGTCTCTC TTCTACAAAC
TCTCTCGTCA TGGCAGCTTC TTCTCCAATG GCAATCCAAC TCAAGTCCTC CTTCACTAGG ACTCTTGTCT CACCCAAGGG
TCTCTCTTCC TCTTCTCCAC TTCCCCTCTA CCCTTCTAGA AGACACTCCA CCTTCACTGT TAAGGCCATC CAATCAGAAA
AGCCAACGTA TCAAGTCATT CAGCCCATCA ACGGTGACCC ATTCATCGGA AGTCTCGAAA CGCCGGTAAC ATCCAGCCCT
TTGATCGCCT GGTACCTCTC CAACCTCCCT GCTTACAGGA CCGCAGTCAG CCCACTCCTC AGAGGCATCG AAGTGGGCCT
GGCCCACGGC TACCTCCTCG TGGGCCCCTT CGTGAAGGCC GGCCCTCTCA GGAACACCGA GTACGCGGGC GCAGCGGGCT
CGCTCGCTGC CGGTGGGCTT GTCGCGATCC TGAGCATCTG CCTCACAATC TACGGGATCT CATCGTTCAA CGAAGGAGAC
GCATCCACGG CCCCTTCCCT GACCTTAACG GGCCGCAAGA AGCAGCCCGA TCAGCTCCAG ACCGCCGACG GATGGGCCAA
GTTCACCGGG GGCTTCTTCT TCGGAGGCAT TTCGGGTGTT ATTTGGGCCT ACTTCCTCCT CTACGTCTTG GACCTTCCTT
ACTACATCAA GTGATTTGTT TCTCTCTCTC TTTTATTAAT TCATTCTCTA TGAATGGACA GTGAATGAAT GAAGAGTTAT
TTGTGCAATA GAGATGCATG TAAATGATGA TGTATTTTAT GACTCTCAAC GTGTCACAAA TGCTAAATTC TCTCTCTTAT
TCTTGCCATT TCTTAATAGC TTTTGCTATT ACATATACAT GCATGGATGA TGAAACCCTA ACTTGTTAAC ACGAACTCTT
CAAGACTTTA AGTATTACAA CTTCGTGGAT TTATAGGATC GAGAAAATTA AAATGAATCA TGATTAGTTC GTGGCAAGGT
TTGTGTTTTA TTACTTATTT TCACATATTG ACGTTGGTTT TAATTATAAA TTTACATAGA AACTCAACAA GATAGTAAAT
TGAAGCACCA ATATATATA

>Vigan.04G069200.01
ATGGCAGCTT CTTCTCCAAT GGCAATCCAA CTCAAGTCCT CCTTCACTAG GACTCTTGTC TCACCCAAGG GTCTCTCTTC
CTCTTCTCCA CTTCCCCTCT ACCCTTCTAG AAGACACTCC ACCTTCACTG TTAAGGCCAT CCAATCAGAA AAGCCAACGT
ATCAAGTCAT TCAGCCCATC AACGGTGACC CATTCATCGG AAGTCTCGAA ACGCCGGTAA CATCCAGCCC TTTGATCGCC
TGGTACCTCT CCAACCTCCC TGCTTACAGG ACCGCAGTCA GCCCACTCCT CAGAGGCATC GAAGTGGGCC TGGCCCACGG
CTACCTCCTC GTGGGCCCCT TCGTGAAGGC CGGCCCTCTC AGGAACACCG AGTACGCGGG CGCAGCGGGC TCGCTCGCTG
CCGGTGGGCT TGTCGCGATC CTGAGCATCT GCCTCACAAT CTACGGGATC TCATCGTTCA ACGAAGGAGA CGCATCCACG
GCCCCTTCCC TGACCTTAAC GGGCCGCAAG AAGCAGCCCG ATCAGCTCCA GACCGCCGAC GGATGGGCCA AGTTCACCGG
GGGCTTCTTC TTCGGAGGCA TTTCGGGTGT TATTTGGGCC TACTTCCTCC TCTACGTCTT GGACCTTCCT TACTACATCA
AGTGA

>Vigan.04G069200.01
MAASSPMAIQ LKSSFTRTLV SPKGLSSSSP LPLYPSRRHS TFTVKAIQSE KPTYQVIQPI NGDPFIGSLE TPVTSSPLIA
WYLSNLPAYR TAVSPLLRGI EVGLAHGYLL VGPFVKAGPL RNTEYAGAAG SLAAGGLVAI LSICLTIYGI SSFNEGDAST
APSLTLTGRK KQPDQLQTAD GWAKFTGGFF FGGISGVIWA YFLLYVLDLP YYIK*