GBrowse Details

Vigan.04G064500.01

Basic Information:
Name: Vigan.04G064500.01
Multiple alignment
Variant Information
Position: Chr04:6074234..6076527 (- strand)
Length: 2294
Functional Information:
Description: Similar to Cytochrome c. [P00052, Vigna radiata var. radiata]
GO: Molecular Function: iron ion binding (GO:0005506)
Molecular Function: electron carrier activity (GO:0009055)
Molecular Function: heme binding (GO:0020037)
InterPro: Cytochrome c, class IA/ IB (IPR002327)
Cytochrome c domain (IPR003088)
Cytochrome c-like domain (IPR009056)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:143.01,92.60,101.73,55.40,184.73,111.59,127.50,69.01
Arabidopsis thaliana homolog: AT1G22840.1
Automatic updates:
Name: NM_001248702 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500015 (LOC100500015), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254026 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytochrome c-like (LOC100817799), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:6074234..6074835 (- strand)
Length: 602
Type: three_prime_UTR
Position: Chr04:6074836..6074928 (- strand)
Length: 93
Type: CDS
Position: Chr04:6075349..6075482 (- strand)
Length: 134
Type: CDS
Position: Chr04:6076257..6076368 (- strand)
Length: 112
Type: CDS
Position: Chr04:6076369..6076527 (- strand)
Length: 159
Type: five_prime_UTR

>Vigan.04G064500.01 class=Sequence position=Chr04:6074234..6076527 (- strand)
AAGTGCCAGG TTGTTTCCAA CGTGAGGGGT TTTAAAAAGA TTTTATGTGA CCGCCTTGTG GTGTAGCGTG TGGTGCTATC
GTCTCATTTC AGCTTCATTT CGTTTCATTT GCATTTCATT TGACGTTTTC TTTCTGGAAG CTTCGGCACG CAGAGATCCA
TGGCGTCGTT CGATGAAGCT CCTCCCGGAA ACTCCAAGAG CGGCGAGAAG ATCTTCAAGA CTAAGTGCGC TCAGTGTCAC
ACCGTCGATA AAGGTGCCGG TCACAAACAA GGTATCGTAT TAGCTTCTTC CCTTTTTGTC CTAATTAGCA CTCAGATCTA
TCGTTCCACT GTTACTTTTT CATCACTTTT TGCATCGCCC TCAACGCTCC ATACTCTCAG GATTTGGATT TTATTTTTCA
TTGTTTAGGT TTCAGAGTTC CTGTGTATTG ATATTGACTC AAACATTCTA TTGTATGTTT GGCTTTCGGT TGTAAGAGTT
TTAAAATACT TTTACGCTCA AAGCAACTTC GTTTTGTTGT TGGAATTTGA AAATTACTCT ATTGACTTCA ATCCGTGCAT
AGCCTTATGT GTTAGAAATT CGTTGTTAAA ACTGAAGGTT ATTTTGATGT GTGATTGGTT TTTGGAATCT TGAAATTGTT
TTTTTGAAGT CTGATCTGTC AACCAGTGTC AATTATTTTT ATTTTTCTAA TTAGGTGGTT TGTTTATTAA AGATTTGACT
GGAGAGAAGC AAGAGGCGAA TGAATTGGTT ATGTTTGAAA TTATTGGGAA TGCAATAAGA ATTTAATTTG TGTACGTTTT
GGGTGAAACC ATTTTATAAC CGATAAGAAA TCATATACTT TGAATATTCT ATACAGAAGG TTTCCCTGAT CTAATGTTCC
TATCTTATTG GAATTATTCT GTTTTACTTT TATTTTGTTA TAGGGTATAT CGTTTACACA CATTTGTTTT AGAGAAAAGG
TAGGGAAGGC TTAGAAGTCT CCTCTCCATG AATAATGTCA TTATGCAATA TTCTGAAGAT AAAAATATTT ACTTGATCAT
TTTAGGACCC AATCTGAATG GTTTGTTTGG AAGGCAATCT GGCACAACCG CTGGATATTC CTATTCTACC GCTAACAAAA
ACATGGCTGT GATTTGGGAG GAAAAGACCT TGTATGATTA CTTGCTCAAT CCCAAAAAGG TACAGCGTAA ATTAATATTT
TGATTTCAAA TGTACTTCAC TAACCTACGT AGTTATCACT TCATGCTACT TGTATAACCT TCGTATTGAT GTATAAATTT
TTTCTTTGGG GCATTGTGCT GTTAAGTTGG TAATGTTGTA AGGTGACATT GAAAATAATT TTTTCTAATG TACAGAGACG
ATAGATTAAT TAATAATTAA TCATTGATTA TACAAATGTG AGATTTGCTT ATGTAACCTG TATGTGAATC ATTTCATGTC
ACTTTATATA TTGTTTTCAT CTGGAGATGG TTATCTTATG TAGTCAGGGT ATTGTGCTAT TAAGTTTTAT GATAATAATA
TTGCAATGCA GGGCGACATT GAGAACTTGT TTCCACCACC ATGTTACTGA TTTGTGGTTT CATTTATCCC CTTATGCAGT
ATATTCCAGG GACGAAGATG GTGTTTCCCG GTCTTAAGAA ACCTCAGGAT CGTGCGGATC TTATTGCTTA TCTTAAAGAA
TCCACTGCAT AAGGATTAAA CTTTCATACA TACAGTTACG CATTGTTCAT TCGAAGTTCC GGAGATTTAA ATTTTCAGAC
ATTTAATTAT GTGGTACAGG AAGTACTGTA TCAACAAATA AAGTAGACCT GATTTGTTTG CAATGCTATT TTGTTCATTT
TGCATTGCTT TTTAAGAATT TGCAATATAT GGGTTAATAC CCAATTAATT TAGCAGTTGA AAGTTGAAAC ATTGTTGCTG
ATATTTAATT TGCTAGAAGG ACAATTTGGT CTACCTTAGT TGCACAAGTG TTTTTTCAAG TCGTATAATT TATGTAGTTT
GCTTAGCTGA ATGAAATGCA TACTTTAACT ACAATGATCT AGGTCATGAT ATGCCAAAGG AGAGTGTTGG CCCAATCTTG
AGCTGGAGTG GTATGGTGAG AGATTTTGTT CCATTGTCAG TTAGCCCTGG ATAAATTTGA GCCGAACAAT TCTTGCATTT
TATTGTTTAG TTTCAATGAT GAAATCGGTC AGTTGGCTTT AGTTTATTTG CTACATGTCT TCTAGTCATT TTATGGAGTT
GGTTGATGGG TGAATTTAAT TTAGGTTAAG TTTTAAGGAC TTTATTTAAA TGTA

>Vigan.04G064500.01
AAGTGCCAGG TTGTTTCCAA CGTGAGGGGT TTTAAAAAGA TTTTATGTGA CCGCCTTGTG GTGTAGCGTG TGGTGCTATC
GTCTCATTTC AGCTTCATTT CGTTTCATTT GCATTTCATT TGACGTTTTC TTTCTGGAAG CTTCGGCACG CAGAGATCCA
TGGCGTCGTT CGATGAAGCT CCTCCCGGAA ACTCCAAGAG CGGCGAGAAG ATCTTCAAGA CTAAGTGCGC TCAGTGTCAC
ACCGTCGATA AAGGTGCCGG TCACAAACAA GGACCCAATC TGAATGGTTT GTTTGGAAGG CAATCTGGCA CAACCGCTGG
ATATTCCTAT TCTACCGCTA ACAAAAACAT GGCTGTGATT TGGGAGGAAA AGACCTTGTA TGATTACTTG CTCAATCCCA
AAAAGTATAT TCCAGGGACG AAGATGGTGT TTCCCGGTCT TAAGAAACCT CAGGATCGTG CGGATCTTAT TGCTTATCTT
AAAGAATCCA CTGCATAAGG ATTAAACTTT CATACATACA GTTACGCATT GTTCATTCGA AGTTCCGGAG ATTTAAATTT
TCAGACATTT AATTATGTGG TACAGGAAGT ACTGTATCAA CAAATAAAGT AGACCTGATT TGTTTGCAAT GCTATTTTGT
TCATTTTGCA TTGCTTTTTA AGAATTTGCA ATATATGGGT TAATACCCAA TTAATTTAGC AGTTGAAAGT TGAAACATTG
TTGCTGATAT TTAATTTGCT AGAAGGACAA TTTGGTCTAC CTTAGTTGCA CAAGTGTTTT TTCAAGTCGT ATAATTTATG
TAGTTTGCTT AGCTGAATGA AATGCATACT TTAACTACAA TGATCTAGGT CATGATATGC CAAAGGAGAG TGTTGGCCCA
ATCTTGAGCT GGAGTGGTAT GGTGAGAGAT TTTGTTCCAT TGTCAGTTAG CCCTGGATAA ATTTGAGCCG AACAATTCTT
GCATTTTATT GTTTAGTTTC AATGATGAAA TCGGTCAGTT GGCTTTAGTT TATTTGCTAC ATGTCTTCTA GTCATTTTAT
GGAGTTGGTT GATGGGTGAA TTTAATTTAG GTTAAGTTTT AAGGACTTTA TTTAAATGTA 

>Vigan.04G064500.01
ATGGCGTCGT TCGATGAAGC TCCTCCCGGA AACTCCAAGA GCGGCGAGAA GATCTTCAAG ACTAAGTGCG CTCAGTGTCA
CACCGTCGAT AAAGGTGCCG GTCACAAACA AGGACCCAAT CTGAATGGTT TGTTTGGAAG GCAATCTGGC ACAACCGCTG
GATATTCCTA TTCTACCGCT AACAAAAACA TGGCTGTGAT TTGGGAGGAA AAGACCTTGT ATGATTACTT GCTCAATCCC
AAAAAGTATA TTCCAGGGAC GAAGATGGTG TTTCCCGGTC TTAAGAAACC TCAGGATCGT GCGGATCTTA TTGCTTATCT
TAAAGAATCC ACTGCATAA

>Vigan.04G064500.01
MASFDEAPPG NSKSGEKIFK TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTAGYSYSTA NKNMAVIWEE KTLYDYLLNP
KKYIPGTKMV FPGLKKPQDR ADLIAYLKES TA*