GBrowse Details

Vigan.04G061600.01

Basic Information:
Name: Vigan.04G061600.01
Multiple alignment
Variant Information
Position: Chr04:5853747..5859063 (+ strand)
Length: 5317
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerase, cyclophilin type. [A2Q1W0, Medicago truncatula]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755)
InterPro: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain (IPR002130)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.64,1.68,5.32,5.02,3.01,7.53,4.48,4.66
Automatic updates:
Name: NM_001357158 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase GmCYP30 (GMCYP30), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:5853747..5854193 (+ strand)
Length: 447
Type: five_prime_UTR
Position: Chr04:5854194..5854553 (+ strand)
Length: 360
Type: CDS
Position: Chr04:5855210..5855308 (+ strand)
Length: 99
Type: CDS
Position: Chr04:5855990..5856034 (+ strand)
Length: 45
Type: CDS
Position: Chr04:5857479..5857616 (+ strand)
Length: 138
Type: CDS
Position: Chr04:5858197..5858529 (+ strand)
Length: 333
Type: CDS
Position: Chr04:5858530..5859063 (+ strand)
Length: 534
Type: three_prime_UTR

>Vigan.04G061600.01 class=Sequence position=Chr04:5853747..5859063 (+ strand)
TGGCAATAAA AACTATTTTA GTGGTATTAT AAAAAATTAT TATTAGCGAA GCAATGCGTC ATCATTCCCT GGGTGGAAAG
TAGGTTGTTG TCAAAGGTTG TACAGTAATC TTGTTTTGCA TGGACATTGC AGGCACGCAA TGTGAGGTGA AAATAGTGAC
AAGAGTCAGA AGACAAAACT GAGTGTATAA ATCACAAAGA AAGGAAAAGG AAAAAGAAGG AAAAGAGGTA AAGATAGATT
GATGAGAAAT AACATGTGGT TTTTATTTGC GGTGGAAGCA TCACCTTTCT GTTTGTTTCA GCTTCATAAT GAAAAAGCCG
CCAACGATCT TGTCCTCTTT GCTGTTGTTG ATGTTCACGT TTCCTCTGTT CTCCATCCCC CAAACGTAGA AAAAAGGAAA
AGCCAAGAAC GAAGTCACCC CTTTGCAATT TCTCTGCATT CTGGAAAATG GGTCGTCGCC AAAACGATTC AGATTTTGGT
AGGTTCGCTC TTTTCGCCCT CTTCTTGATT GGCACAATCT CCTGCTCCGC GGTGTACCTT TTCCTTTCCG TGATCTTGAG
ACCCAACAGT GAATCTCTGC CTTCGGCGGA AGATGAGGGT CCAAAAGAAG AGCAATGTTG CAGAGGGGTT GAGAATTTGG
AGCTTTGGGG TGAGGCTGTC AAATGGGGTT CTGAATTTGT TTTGAATTCC TCCGAAGAAT GTTGCATGGC GTGTAAGAGA
ATGTGTAACG GTGAGGGAGG GCCCTGTTTG TGTAATTCCT GGGTTTATTG TGGAGATAGA GAGGCGTGTG GACCTAGATT
TGGTGAGGTA TCGTGGCATT TCTTTTTGTT TGCCACTCTA GATTTAATTT ATCATATTAG GCATGTGATG TAGGATATTT
AGCGTGTTGA TTAGCTCTTG CACTTGCTTT TGGCTTCACG TGTAGTGTTT TTTTATTGTT AGTGTGCAGT TTTCATTGGG
TATACTTCCC AATGTTAGAT CTTGCCCAAG ATTCAGTTTT TGTGTCACTT GTTCCCAAGG CCTGACCCCA GTGGTTGTGT
ATTGGGTACT CGTGCTCCAT ATTGGAGGTC CGATTTTCTC ATGCCAATGA GCCTAAAGCC AACATTTCCT ATCCTCAGAA
TTTAAATGAC GCTGTTCTCA ATTTTTTCCT GCTTGCAATT GGGTTTTATC ATACTTTATA TTCTGATTGC TGAATACTTG
ATACATGGCG AACACTTGGA GATTATCACA AATACGAATC TAGTTGCTTC ATGCCTTTGT GCTTTAGTTT AATGGCTTGA
TTTGGGAATT TGGTTGGGCA TAAGAGTATC ATCGTTGTAA AGATTGCTGT TCTAGCTTGG TGTAGTTTTT TATCATTGCC
TTGAATTAAC AATTGAATAA GAATGAAATT TTAATCCTTT TTTTTAAGAA TAGAATTTTG GAGGTACTTG ATAGTTGATT
CTATTTTCCT GCTTTCGTTT CAGTGTTGGT TAAAAAAGCA ACAGGATGCT TTAAATCCCG ATCGACGAGA CTCGGGAGAT
CTTGTAATGT GGACTTCTGG GTTGGTCTTT CGTAAGGGAG AGGTAGGAAT ATTATTTATT ATAGTTTGTT CTATCAAATT
ATTTTATTTG GTTTGTAAAA GTATTTTCTT TTCTGATTAA AAAAATCATT GCAACAAAGT GAAAAACTAG AAAAAAAAAA
CAAGAGATTT GTCATGGAAA CCTCCTCAAG AATCCGGTGT TAAGCTCCAA CCATATGCAT TAGATTGTAG AAATTTTATG
TCATGGAGTA ACCTGTTTAT GGATGAGAAA CAAGGTAGAA AGAACTGCAA AATGTTTTTC CTCTTTGAAT TGTTATAAAA
GGCAAAGAGT TTTGCTATAC AAATGAATAT GTGGTATTGT ATTTCCTGCC AGTTAATCTG TCAATGTTTC GACCTTAATG
CTTTTAAATC TTCTCAATTA CTCTGGGAGG ATCTTCTGAT ATCATGTCGC ATTACTCCCT ATATGTATTT TGAGAATCCT
GCTTTAGGTT AGAATCACTT CATTCTAATG TGCTTATCAG TTTTTGCCCT TAATTGTATC CCATCTTTTT TATCATAATT
GAATTGAAGT GTAAGCATTA TGCAATGATT TATGTTCACA TAATTTGCTC AAATATATAT TCTCAACATC CTTTTGTTTT
CTGCTCAGCA TGAAGCTATG TGATTGTTGA ATACTAGATC TTTGAGCAAC ATATAACTTT TCCTTATACA CTTGTATTTT
TAGGAAATCG TTGGTATGGA AACGGACCAT GGAATTCTTC GTATAAAAGT AAGTAATTCT CTACATACCC ACTGTATTAT
ATCATTTTCA TTTGCACCTT TTTACCCTGG TTATTTTACA TCTGGTATGC CAGATATGTT TTTCATTTTT ATGTTGTTTC
TATCATGTAA TTCTTAATGT TAAATCTAAC AAACAAACGA GACACGTCCA ATGTGTTTGA AAAAATAGAA GTCATCTAGC
TCTTATTAAA TTGCTTCTCT TTATGTATTA ATGTGTGTGA AGGGGAGGGA CCGATAGATG CCATACATGT TTTGGTTTAT
TAGTATTGTT TTTTGTATCA TTTAGTCATT TTACAGATGG ACTAGGAGAA GTTTGACTAT GCATAAGAAG TTTGTTAATT
GGCTTGCTAA GAGAGAAAAA TAAGGAAAAG AATGGGAAAG GAGCATCTCT AAAAGCTAAA TTTAGCTTGC AATAGAGAAT
AAAAATTTAG GAAAATTATA TGAAGTAGCT TCTACAAATT AGCTTTTGCA GAAGTTAGTT TTAACTCTTA GAAAATCTCA
TTTAATTTTT TTTTCTCTCG TACTTATCTT TGTGGAGAGA AGCTTGTTCA AATGTACTTG GAGATAAAGA GAACATAGAT
TTTTACACTT TGTTTATAAT TTCTAGTAAC TGCACCTATT TTTGCCTTTT TTCCAAAGCA GTATCTAATC ACATGCTTTT
CACATGCTGA TTATTTTTCA GCTTGAATCA TTCATCTATT ATCTACTTAG TCTGATTATT TTTGTGAAAC TTTGCATAAG
TTGCAGCTGA TAGCATCAGC CAAAGTTTTG GAAAAAGCTG ATAGCATAAG TTGCATATTT TGTGAACAGA TTATGTAAAG
CAGGCTATTG GAAAAAAATA ATTTTGAGCA GATTATGTAC ATATGTGACT TTTTTGAGTG ATTTAGGTTC AGAGACATTT
GAAAAGGTAG TTCTTTTAAT GCATACAAGC TTGGAATACA GGATTATCTA GTTCCAAGGA AGATGGCTTG TCACTAGGGT
TGATGCTAAG TGCACTTGTC GACCAGTGTT TAAGGCAAGT TCAATATTAA AAATGCAATT TTGGATAGAG CAGTGAGTGA
TTTCTGTGTT GACATATTCT GTACCAAGTA GTAGGTGTAG CTTGAAGATG TTGCACTTGC ACATACTGTC ATCCAGCCTT
ATACTTTTAG TTTAGAGTGT CACTGGATAG GAGGGGGAAG GATTTTTTAA TTTTGAACTC TGCTTCAACT TTTGCCCTTA
TTTGATGAAG ATTCTGTCTT CTCTGAGCCT TAATCATGTT GCTAGCCTTC TAGTAAAATG CAAAGTTATA TCATGACCAA
TATCTAGATA TAATGGCTTG ACTTTCTACA GATATATGTA TCTGGGACAG TCTAATGCTC TCCTAGTTAT GCGATAGATA
GATTGAGAGG AAGAAACTGA AAAAAATGTG TTCTAAACTT TCATTGCCAC AGCTTTTACC CGAATGCGCA CCAAATTCTG
TCTTCTACAT TCTTGAGCTC TTGGCACTGC CTCACTGTAT TGGTTGTCAG ATTCATAGAG CTGAAAGCCG AGGAAGCTTT
TGGGATTCAA AAGGAAATCA CATAAAAAGG GTAAGATTTA TTATGTTAAT AACTATAGAA AATTGTGCAT AAGTTCTGCA
TAGATTTGCT GCTTGTTTTA ATCAATTTCT TTGTGAATGA ATTGATTTTG GTTGACAATG TATCTGCTCA TCTGCTCATC
ACATGACTGG TTGTTGTATT TTTATACTGC CTGCAAATGT TACTTAAATG ATTTTATTTT CCTTTTCGGG ATTCTTTATA
GCAATATTTC GTGGTAATTA TATTTGACTT GGTTACACTC TGTTCTTCTG CATTTTATTC ATGGTTAACT CAACTTTTTG
TGGCCCTCTG CTTCTTCTAT CGGCCATTTA AAGGAAAAAA AAAGAGAGGA TAAATCAAGT AGTGGATCCA TTTGTGTTTA
ATACTGGTTC TATCCTATAC CTGCATCTGC TTAATTTTTA TCCTAGCTTT CTTGTTTTGA AGTAGTTGAA GTTTCTTCCT
GAATGGTGGA AACTTGTCCT CTGCTGGCTG CTTTGTTCTT AAGTTTAATT TCTGTACAAC TTACCTCCAG ATTATTGATT
ATTGACAACC CCCCTTTTTT TTGTGTTTTT GAATTTGAAT GTTGTTGTAG ACTCCATATG GTCCTCCTTT TGCACTTATT
CAAGGAACAT TGGAATCCCA TGGGTCTATT TTCAAGGATA TTCCAAAAGA GTACTGCCCT ACCGTAAGAA GAGGATCTGT
AGCATGGGTT GGTTCTGGTC CAGAATTCTT CATCAGCCTT GCGGATCACG AGGAATGGAG AAATCCATAC ACCGTTTTTG
GCTATGTTCT ATCTGAGGAT ATGGAAGTCT TAGAGAAAAT TTCTCAGCTT CCAACTAAAT CTGAAATCTG GAATAGCATT
AAGATCTCTA TCTTGGAGAA CCCAGTTTCA TTACGTTTTC GAAGAATGAA CACAAAGTCT TGAATCCTCA GTTTCATTGA
TTTGTTCTTT CAAAATTTTC CTTATTTGTT AAGTGATAAG GGGTTCAATA TGGATCTTGG GCTCAAGTTG CTTTCAGCCA
TTCTAGCTGA TTGCAAATCA AATAGAGTAG AGTGAGTGAG TATACAAGTT TTATAGGTAT GTCTGTGGAT ATTTCGTGCT
TCTGTTATTT CATATTTCCT TGCACATAAC ATAGTGTTGA AGAAAGGGCA GCATCATTCT CATCATCGTA GACAACAAAA
GCATACTGGA AATGGGATTA TGTCCCAAGA TACTAGCTGA TGACACCCAT TTGCAGGCAT TATTGTGTGC TACAAAATTA
GTGAACATTT CTTCATTCAC CATCAGATTA GGTGGACCCA TAGAACAGAA TAATTGACTC ATTGTATTGA AGTTTGTGCC
TTGCACTTCT TGCCTTTCAT CACACAAAAA TATTTTTTGA AGTTTTAGTA TTTTCTCTTG TTAGGTAATA TTTTGTACAT
TTCTGGAAGG AACTTCAATT TTTGACATAT CAACGTG

>Vigan.04G061600.01
TGGCAATAAA AACTATTTTA GTGGTATTAT AAAAAATTAT TATTAGCGAA GCAATGCGTC ATCATTCCCT GGGTGGAAAG
TAGGTTGTTG TCAAAGGTTG TACAGTAATC TTGTTTTGCA TGGACATTGC AGGCACGCAA TGTGAGGTGA AAATAGTGAC
AAGAGTCAGA AGACAAAACT GAGTGTATAA ATCACAAAGA AAGGAAAAGG AAAAAGAAGG AAAAGAGGTA AAGATAGATT
GATGAGAAAT AACATGTGGT TTTTATTTGC GGTGGAAGCA TCACCTTTCT GTTTGTTTCA GCTTCATAAT GAAAAAGCCG
CCAACGATCT TGTCCTCTTT GCTGTTGTTG ATGTTCACGT TTCCTCTGTT CTCCATCCCC CAAACGTAGA AAAAAGGAAA
AGCCAAGAAC GAAGTCACCC CTTTGCAATT TCTCTGCATT CTGGAAAATG GGTCGTCGCC AAAACGATTC AGATTTTGGT
AGGTTCGCTC TTTTCGCCCT CTTCTTGATT GGCACAATCT CCTGCTCCGC GGTGTACCTT TTCCTTTCCG TGATCTTGAG
ACCCAACAGT GAATCTCTGC CTTCGGCGGA AGATGAGGGT CCAAAAGAAG AGCAATGTTG CAGAGGGGTT GAGAATTTGG
AGCTTTGGGG TGAGGCTGTC AAATGGGGTT CTGAATTTGT TTTGAATTCC TCCGAAGAAT GTTGCATGGC GTGTAAGAGA
ATGTGTAACG GTGAGGGAGG GCCCTGTTTG TGTAATTCCT GGGTTTATTG TGGAGATAGA GAGGCGTGTG GACCTAGATT
TGGTGAGTGT TGGTTAAAAA AGCAACAGGA TGCTTTAAAT CCCGATCGAC GAGACTCGGG AGATCTTGTA ATGTGGACTT
CTGGGTTGGT CTTTCGTAAG GGAGAGGAAA TCGTTGGTAT GGAAACGGAC CATGGAATTC TTCGTATAAA ACTTTTACCC
GAATGCGCAC CAAATTCTGT CTTCTACATT CTTGAGCTCT TGGCACTGCC TCACTGTATT GGTTGTCAGA TTCATAGAGC
TGAAAGCCGA GGAAGCTTTT GGGATTCAAA AGGAAATCAC ATAAAAAGGA CTCCATATGG TCCTCCTTTT GCACTTATTC
AAGGAACATT GGAATCCCAT GGGTCTATTT TCAAGGATAT TCCAAAAGAG TACTGCCCTA CCGTAAGAAG AGGATCTGTA
GCATGGGTTG GTTCTGGTCC AGAATTCTTC ATCAGCCTTG CGGATCACGA GGAATGGAGA AATCCATACA CCGTTTTTGG
CTATGTTCTA TCTGAGGATA TGGAAGTCTT AGAGAAAATT TCTCAGCTTC CAACTAAATC TGAAATCTGG AATAGCATTA
AGATCTCTAT CTTGGAGAAC CCAGTTTCAT TACGTTTTCG AAGAATGAAC ACAAAGTCTT GAATCCTCAG TTTCATTGAT
TTGTTCTTTC AAAATTTTCC TTATTTGTTA AGTGATAAGG GGTTCAATAT GGATCTTGGG CTCAAGTTGC TTTCAGCCAT
TCTAGCTGAT TGCAAATCAA ATAGAGTAGA GTGAGTGAGT ATACAAGTTT TATAGGTATG TCTGTGGATA TTTCGTGCTT
CTGTTATTTC ATATTTCCTT GCACATAACA TAGTGTTGAA GAAAGGGCAG CATCATTCTC ATCATCGTAG ACAACAAAAG
CATACTGGAA ATGGGATTAT GTCCCAAGAT ACTAGCTGAT GACACCCATT TGCAGGCATT ATTGTGTGCT ACAAAATTAG
TGAACATTTC TTCATTCACC ATCAGATTAG GTGGACCCAT AGAACAGAAT AATTGACTCA TTGTATTGAA GTTTGTGCCT
TGCACTTCTT GCCTTTCATC ACACAAAAAT ATTTTTTGAA GTTTTAGTAT TTTCTCTTGT TAGGTAATAT TTTGTACATT
TCTGGAAGGA ACTTCAATTT TTGACATATC AACGTG

>Vigan.04G061600.01
ATGGGTCGTC GCCAAAACGA TTCAGATTTT GGTAGGTTCG CTCTTTTCGC CCTCTTCTTG ATTGGCACAA TCTCCTGCTC
CGCGGTGTAC CTTTTCCTTT CCGTGATCTT GAGACCCAAC AGTGAATCTC TGCCTTCGGC GGAAGATGAG GGTCCAAAAG
AAGAGCAATG TTGCAGAGGG GTTGAGAATT TGGAGCTTTG GGGTGAGGCT GTCAAATGGG GTTCTGAATT TGTTTTGAAT
TCCTCCGAAG AATGTTGCAT GGCGTGTAAG AGAATGTGTA ACGGTGAGGG AGGGCCCTGT TTGTGTAATT CCTGGGTTTA
TTGTGGAGAT AGAGAGGCGT GTGGACCTAG ATTTGGTGAG TGTTGGTTAA AAAAGCAACA GGATGCTTTA AATCCCGATC
GACGAGACTC GGGAGATCTT GTAATGTGGA CTTCTGGGTT GGTCTTTCGT AAGGGAGAGG AAATCGTTGG TATGGAAACG
GACCATGGAA TTCTTCGTAT AAAACTTTTA CCCGAATGCG CACCAAATTC TGTCTTCTAC ATTCTTGAGC TCTTGGCACT
GCCTCACTGT ATTGGTTGTC AGATTCATAG AGCTGAAAGC CGAGGAAGCT TTTGGGATTC AAAAGGAAAT CACATAAAAA
GGACTCCATA TGGTCCTCCT TTTGCACTTA TTCAAGGAAC ATTGGAATCC CATGGGTCTA TTTTCAAGGA TATTCCAAAA
GAGTACTGCC CTACCGTAAG AAGAGGATCT GTAGCATGGG TTGGTTCTGG TCCAGAATTC TTCATCAGCC TTGCGGATCA
CGAGGAATGG AGAAATCCAT ACACCGTTTT TGGCTATGTT CTATCTGAGG ATATGGAAGT CTTAGAGAAA ATTTCTCAGC
TTCCAACTAA ATCTGAAATC TGGAATAGCA TTAAGATCTC TATCTTGGAG AACCCAGTTT CATTACGTTT TCGAAGAATG
AACACAAAGT CTTGA

>Vigan.04G061600.01
MGRRQNDSDF GRFALFALFL IGTISCSAVY LFLSVILRPN SESLPSAEDE GPKEEQCCRG VENLELWGEA VKWGSEFVLN
SSEECCMACK RMCNGEGGPC LCNSWVYCGD REACGPRFGE CWLKKQQDAL NPDRRDSGDL VMWTSGLVFR KGEEIVGMET
DHGILRIKLL PECAPNSVFY ILELLALPHC IGCQIHRAES RGSFWDSKGN HIKRTPYGPP FALIQGTLES HGSIFKDIPK
EYCPTVRRGS VAWVGSGPEF FISLADHEEW RNPYTVFGYV LSEDMEVLEK ISQLPTKSEI WNSIKISILE NPVSLRFRRM
NTKS*