GBrowse Details

Vigan.04G058900.01

Basic Information:
Name: Vigan.04G058900.01
Multiple alignment
Variant Information
Position: Chr04:5578712..5583650 (+ strand)
Length: 4939
Functional Information:
Description: Similar to Uncharacterized protein. [I1N466, Glycine max]
InterPro: Hyaluronan/mRNA-binding protein (IPR006861)
Stm1, N-terminal (IPR019084)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:43.25,73.87,71.92,66.45,110.38,186.70,78.81,75.48
Automatic updates:
Name: NM_001254586 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100807657 (LOC100807657), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:5578712..5579025 (+ strand)
Length: 314
Type: five_prime_UTR
Position: Chr04:5579026..5579212 (+ strand)
Length: 187
Type: CDS
Position: Chr04:5580202..5580520 (+ strand)
Length: 319
Type: CDS
Position: Chr04:5580597..5580662 (+ strand)
Length: 66
Type: CDS
Position: Chr04:5580786..5580918 (+ strand)
Length: 133
Type: CDS
Position: Chr04:5581341..5581496 (+ strand)
Length: 156
Type: CDS
Position: Chr04:5581592..5581648 (+ strand)
Length: 57
Type: CDS
Position: Chr04:5582752..5582931 (+ strand)
Length: 180
Type: CDS
Position: Chr04:5582932..5583650 (+ strand)
Length: 719
Type: three_prime_UTR

>Vigan.04G058900.01 class=Sequence position=Chr04:5578712..5583650 (+ strand)
GAGCAGATAC ATAAATTCCT ATTCCTAGGT CTGAAATAAA TAAGAGACTT TGAAGAGATT AGGTTGTGCT GTCTATTCTA
TTCTATTCTC TCACACTCTC ATTCGCACAC TCTCATTCTC TCTCTCTTTG CGGCTAGGGT TTTAGGTCTT TACCCTCGCA
TTTCCTTCAA TCGTCTTCTT CTCTTTGATC TCCCATACGT TTCAGTTTTG TTCAAAATGG AAACTTTGCT AGTTTAAAAC
CAAGTAGTGG TCGAGGCTTT GTGTTTGGGA ACGTACAGTC TTGTTTTGGG ATTGGGAAAA ACAGATTCTG AGAGATGGCA
ACCATGAACC CCTTTGATTT GTTGGGTGAC GACGCAGAGG ACCCTTCTCA GCTCATCGCG GCCGAGCAAC TCAAGGCGGC
GGCAGCGGCT GCGGCGGCCG CGGCGGCTCC GAAGAAGGCG CCTGTTCAGC AGAACAAGCC GGCTCAGCTG CCCACTAAGC
CTCCTCCTCC TGCTCAAGCG GGTGAGATTC TCAACTAATT GAAGTCTTGT TTTTTGGTTT TTCTGGTTTT GCATTTTTGG
TTGGGTGGAT TGGAAGAGTG TTAATCGAGT TTGTTTGATG ATTGTGCTGA GATATCTGTC GTTTTGGGAT TGTTTTTGTT
TGTTAATGGG TGGGTTGTTT GGTTCAATGG GTTTACTTGA CTAAGTTGTG CTGTGTGTTT TTGTTGTCTT TGTATGTTAT
TGTTGATTTA TTTACATTTG CCTTTGATCA TGATTTTCTT GTTGTATGTG TTTGATACGT TTATTCATTG TCAGGGTGTT
GTTTTAGCCT GCTTGTTGGG ATTTGCGCAG GTGATCTAAA GTCACAATAA AATGCTAACC GATGTGATTA TTGGTAAATG
TTCATATGTC TGGTTTCATG TTGTGGAATT GATTCTGGGA CTAGCTTGAT TTTGAGTTAG AAAAACTTTA ACTAGCTTTT
TGCACTAGAT AAAAAACATT GAGTTTTACA AATTTGGTTT TAGATTAAAA TCATAAAAAT ATCTATCGCA CCACTGCCAA
ATGAATTTCA TTTATAATAA ATATTGCAAA CAGTTGTGTG TATATGAAGG TTGGTTGTGT ATGTTGGAAG GGTATTACGT
GGTAGTGGTG TTCTCTAAGT TTTCTCGCGA GGTATTGTGT ATTGGATACA TAATGCATTG TTAGTTGTGA GGAGGGTAAT
CTGATGTGAG TTTTTGTTGA AATTACTTTC TGTGATAACT CATGAGTAAA TTACAATGTG TTACATATTT CATTTAAAAC
TGCTCTTTTT TTGTAATTTG TTTACGGACA TTTTCCATTT CAAACTGTTA TTTTTGTAGG AATTTGGGTA TGACATTGCC
AGAATTAATT GGTTAAAGTT TTTTTAGTTG GTTGATTTTT TGTTGGAAAT TGTCCTTGTA ATTATGAATG TTTATTGACA
ATCTTTATGT TCTTTTGATT TCACATTTTC TGCTTGTGTC CTGTTGATAG TTAGGGAGTC CAGAAATGAT CCTGTTCGTG
GAGGCCGTGG AGGTGGACGA GGTGGTGGAC GTGGGTTTGG ACGTGGTCGT GGGTTTGGTA GGGACTCTTC CAATGATGAG
AATTCGTTTC CTGGCACTGG AGCTCCTTAC AATTCGGGTT CTTTTGAAGA AGGAGATGCT GGGAAGTCTT CTGAAAGACG
TGGTTATGGT GGACCACGAG GTCCTTATCG TGGTGGGCGC CGTGGAGGTT TTAGCAATGG TGAAACTGGT GAAGGTGAAG
AAGGACGCCC TCGACGAGCA TTTGATCGTC GCAGTGGGAC GGGCCGAGGG TGATGCTACT ATTGATAACA AATCTCTGTT
TGATTTATGT TTTGTAAGTA CTGATGTCCT TTGGTCTACT CGCAGAAATG AATTTAAACG TGAAGGTGCT GGACGTGGTA
ACTGGGGAAC GCAAAATGAT GATATTACCC AGTAAGCATT CTTCTCAAAA TTTTGTATTC TATTATTTGA ATAGTAGTAT
TATTTACATT GTTTATAGGA AATTCTGCTT TTAATTATTG CTATTTATAT TCTTTTCCTC CTGGTTTATA TTAGGGAAAC
TGAGGAAGTT GTGAATGAAA CTGAAAAGAA TTTGGGAGAT GAGAAGCCTG CAGTTGAAGT AGAAGTAGCT GATGGAAACA
AGGACAATCC TGCTAATGAC ACTGAAGAGA AAGAGCCTGA AGATAAGGTG ATTTCCAACC CTAATCTATG CTTTTACTTA
CCATATTGGT CAGCTTTTTG CAAGTGTCTG TCAGTTTTCA TGTGTATTTG TTTTTATTGA TTAATAAATG CAGTGCATGG
CTATGTTTAC GAACTGTCTG GTGTAATTGC TTGATCCCCC ACATCCCATT TCCTTGGTCA CCTTGGGGTC CATAAGGACT
AACGTCGGAT GACATCATCA AATTGAATGT CAACATCTTA TGTTGTCATA TAGCCTCATT GATAACAATT TATGGATTTG
TCTGTATATA TATCCTGTTG ATATACTCAT TTTATGTTAC CACTTGCGGT TTACTTTCTA CGTTCACCTT CTCTGGTGGT
TAATTACCTA AGATGTGTTT TTAATTATAA ATTTATTGAT CTGTTGGTAT TGTGCTGTTC ATTCGCTAGG AGATGACTCT
GGAGGAATAC GAGAAAGTGC TGGAAGAGAG AAGGAAGGCC TTCCAAGCAC TCAAGACTGA AGGAAGAAAG GTGGACACTA
AAGAGTTTGC ATCCATGCAA CCCTTGTCAA GCAAAAAGGA CAATCATGAC ATATTCATTA AACTGGTGAA TACATTTTAA
ACCATCGACT TCAATCTATC TTCTGTTCAT ATGTTGGTAA TACCTGGTAA CATGTGTTGA CACATTTGTC TTTTTTCCAG
GGATCTGATA AAGATAAGCG AAAGGAGGCT TTTGAGAAGG AAGAAAAATC CAAAAAGGTT TGACTTTCTT GAATTTTCTT
GTTATTTCGC CTAGATTGTC ATTTTCTTCT TCTCAATTAG GTCGTTATCA TGAAAGATTA TCAAGCAAGT ATCACTATCC
CACATTTCAT GGTTTATTAT GTATTTGGGA ATTATAAGAA AATTTAAAGT TAAAAAATAT TTTTTCTATG AAATTTAAAA
TATAAACAAA TGTTAACAAA TTAATTGTTT AGTATTTCAA AAGTAATTCA ATTAATAGAA TACCATTTCA ATAATTTTAA
TTTTATCTGA TTTTATTTAA TGTTTATTGG TGAAATTTAT GTATTAACTA AAATAATTAA GGGAATCTAG TCAAATGTGT
GGCTAACTAG TTTTCAAGAA TGAGGACTTA ATTTTTAATA TACGGGTAAT TGATTACTTC TATTCTCAAT AGTCTAAACT
TTTCTTTACA TGCTCACTCA GACACTCGGG TGTGCCCCTG CTTGCCTGTG TGATCGACCA GTGTGTGGAT TCTTTAATAT
CAATCTCCTG ATCTCATGCT ACTTAGAATA TGCAATATAT GTCATTTGAG AGACAATAAT TATTAAACTG AAATGTTCTG
TGCTGGTTAA CAAAGATTTT TCTCAACAGC GATATTAATT TTGTGCTGAT TTTCACATTG AAAAGGATAA TTTTTATTTT
TCAACAGTAA ATAATTTGTA CATTAAAGGA GTTTTCACTG TCATACAGAC ACAGATAATC ATGTTTGGTA ATTTTCTTGA
CCTCTGCTAT AACTATCTTG AAAGACATGT CAATAGTGAT TTCAAAATGG TTGTTTGTAA TTTTTTTGCG CTAATCTTTT
TAATGCTTCT TTGTGACTTC TGTAGTCTGT TCCCAACTCT GTTATCTGAA CTAGGTGCCA TGTTCTGCTT ATTTCTGCAT
GTTCAAATAG TCTTGCTTGG TATTTATATA TCCACAACAT TTTCTTGCTC CTGTTTTATA CAAATTTTAG GTTGGCTGTT
TTGGAAAGTC AAATGTATTT TTCTTTTGTA TAATGAATAG TTGATTTCTT TGATCTTTGT TTCTGTTCCA TTATCTTTTG
TTCTTCTGAC TAAATCTTGT TTCATTCATC ATATTTTTAG TCTGTTAGCA TCACCGAATT CCTGAAGCCT GCTGAAGGGG
AAACTTACTA CAGCCCAGGT GGACGTGGTA GGGGCCGTGG TCGTGGCTCT CGTGGTGGTT TTCGTGGAGG TGTTACCAAC
AGTGCACCTG CCCCATCCAT TGAAGATCCT GGGCATTTCC CAACCTTGGG TGGCAAGTGA GGTTTCCCAG AACCCTTTTG
ACATATCCTT GTCATATTTT CAGTTTTGGG TTCTCATTTG AACTTATGCA GGAAAAGAAC TACGGTTATT GGATTTCCTG
GTTCAGAAGG GTCATTTAAT TATGTCTTAA CATGTAAATT TAGGTTGTTC TTCATACGGT CCTGTATCCC TTGTAGCCTG
TTTCCCCATA TGCTTTGCTT TTGTCTGCGT TTGACATATT GGGGTATATG GTGGGGGGAA GGTGGTAAGA GACATAAGTG
TTGTTGAGTT TCCTTTTCTT CATAGATAGA CAACTCAGTT TTGCTTCAGA TTTTGGTTTC TTATCTTCAA TCCCAGTCAA
ACAAGAATAA GTTGGAACAT AAGTTGAAGA CGTCCTTGGT TATTTTTTTT TTGTACCAGG GCTCTTTCTC TGCCTGGTGC
CAGTGCTTAG CACTACCTAA ATTTCTCTAG ATAGCGTTAC ATAATGAGTT AGATCATAAT TGGACTATTC TATTCGGTGA
TCTTTGGGTA GAATGTTACA TTTTGTAATC TGTGTGCTAC TTTCTTAAAT TCACTTTAAA CAAACAACCC AACCCAACAT
TTTAAGAACT CACGCTTCAC ATCACTCTTA ACCATTATTT TTATACCGAT AATTTGAACT GATTACATCT TAAAATTTCT
CTTCCATTAC GGGTTAGTTT AATGTAATGA TGATTTATAT TCGTAATTTT AAACTATAT

>Vigan.04G058900.01
GAGCAGATAC ATAAATTCCT ATTCCTAGGT CTGAAATAAA TAAGAGACTT TGAAGAGATT AGGTTGTGCT GTCTATTCTA
TTCTATTCTC TCACACTCTC ATTCGCACAC TCTCATTCTC TCTCTCTTTG CGGCTAGGGT TTTAGGTCTT TACCCTCGCA
TTTCCTTCAA TCGTCTTCTT CTCTTTGATC TCCCATACGT TTCAGTTTTG TTCAAAATGG AAACTTTGCT AGTTTAAAAC
CAAGTAGTGG TCGAGGCTTT GTGTTTGGGA ACGTACAGTC TTGTTTTGGG ATTGGGAAAA ACAGATTCTG AGAGATGGCA
ACCATGAACC CCTTTGATTT GTTGGGTGAC GACGCAGAGG ACCCTTCTCA GCTCATCGCG GCCGAGCAAC TCAAGGCGGC
GGCAGCGGCT GCGGCGGCCG CGGCGGCTCC GAAGAAGGCG CCTGTTCAGC AGAACAAGCC GGCTCAGCTG CCCACTAAGC
CTCCTCCTCC TGCTCAAGCG GTTAGGGAGT CCAGAAATGA TCCTGTTCGT GGAGGCCGTG GAGGTGGACG AGGTGGTGGA
CGTGGGTTTG GACGTGGTCG TGGGTTTGGT AGGGACTCTT CCAATGATGA GAATTCGTTT CCTGGCACTG GAGCTCCTTA
CAATTCGGGT TCTTTTGAAG AAGGAGATGC TGGGAAGTCT TCTGAAAGAC GTGGTTATGG TGGACCACGA GGTCCTTATC
GTGGTGGGCG CCGTGGAGGT TTTAGCAATG GTGAAACTGG TGAAGGTGAA GAAGGACGCC CTCGACGAGC ATTTGATCGT
CGCAGTGGGA CGGGCCGAGG AAATGAATTT AAACGTGAAG GTGCTGGACG TGGTAACTGG GGAACGCAAA ATGATGATAT
TACCCAGGAA ACTGAGGAAG TTGTGAATGA AACTGAAAAG AATTTGGGAG ATGAGAAGCC TGCAGTTGAA GTAGAAGTAG
CTGATGGAAA CAAGGACAAT CCTGCTAATG ACACTGAAGA GAAAGAGCCT GAAGATAAGG AGATGACTCT GGAGGAATAC
GAGAAAGTGC TGGAAGAGAG AAGGAAGGCC TTCCAAGCAC TCAAGACTGA AGGAAGAAAG GTGGACACTA AAGAGTTTGC
ATCCATGCAA CCCTTGTCAA GCAAAAAGGA CAATCATGAC ATATTCATTA AACTGGGATC TGATAAAGAT AAGCGAAAGG
AGGCTTTTGA GAAGGAAGAA AAATCCAAAA AGTCTGTTAG CATCACCGAA TTCCTGAAGC CTGCTGAAGG GGAAACTTAC
TACAGCCCAG GTGGACGTGG TAGGGGCCGT GGTCGTGGCT CTCGTGGTGG TTTTCGTGGA GGTGTTACCA ACAGTGCACC
TGCCCCATCC ATTGAAGATC CTGGGCATTT CCCAACCTTG GGTGGCAAGT GAGGTTTCCC AGAACCCTTT TGACATATCC
TTGTCATATT TTCAGTTTTG GGTTCTCATT TGAACTTATG CAGGAAAAGA ACTACGGTTA TTGGATTTCC TGGTTCAGAA
GGGTCATTTA ATTATGTCTT AACATGTAAA TTTAGGTTGT TCTTCATACG GTCCTGTATC CCTTGTAGCC TGTTTCCCCA
TATGCTTTGC TTTTGTCTGC GTTTGACATA TTGGGGTATA TGGTGGGGGG AAGGTGGTAA GAGACATAAG TGTTGTTGAG
TTTCCTTTTC TTCATAGATA GACAACTCAG TTTTGCTTCA GATTTTGGTT TCTTATCTTC AATCCCAGTC AAACAAGAAT
AAGTTGGAAC ATAAGTTGAA GACGTCCTTG GTTATTTTTT TTTTGTACCA GGGCTCTTTC TCTGCCTGGT GCCAGTGCTT
AGCACTACCT AAATTTCTCT AGATAGCGTT ACATAATGAG TTAGATCATA ATTGGACTAT TCTATTCGGT GATCTTTGGG
TAGAATGTTA CATTTTGTAA TCTGTGTGCT ACTTTCTTAA ATTCACTTTA AACAAACAAC CCAACCCAAC ATTTTAAGAA
CTCACGCTTC ACATCACTCT TAACCATTAT TTTTATACCG ATAATTTGAA CTGATTACAT CTTAAAATTT CTCTTCCATT
ACGGGTTAGT TTAATGTAAT GATGATTTAT ATTCGTAATT TTAAACTATA T

>Vigan.04G058900.01
ATGGCAACCA TGAACCCCTT TGATTTGTTG GGTGACGACG CAGAGGACCC TTCTCAGCTC ATCGCGGCCG AGCAACTCAA
GGCGGCGGCA GCGGCTGCGG CGGCCGCGGC GGCTCCGAAG AAGGCGCCTG TTCAGCAGAA CAAGCCGGCT CAGCTGCCCA
CTAAGCCTCC TCCTCCTGCT CAAGCGGTTA GGGAGTCCAG AAATGATCCT GTTCGTGGAG GCCGTGGAGG TGGACGAGGT
GGTGGACGTG GGTTTGGACG TGGTCGTGGG TTTGGTAGGG ACTCTTCCAA TGATGAGAAT TCGTTTCCTG GCACTGGAGC
TCCTTACAAT TCGGGTTCTT TTGAAGAAGG AGATGCTGGG AAGTCTTCTG AAAGACGTGG TTATGGTGGA CCACGAGGTC
CTTATCGTGG TGGGCGCCGT GGAGGTTTTA GCAATGGTGA AACTGGTGAA GGTGAAGAAG GACGCCCTCG ACGAGCATTT
GATCGTCGCA GTGGGACGGG CCGAGGAAAT GAATTTAAAC GTGAAGGTGC TGGACGTGGT AACTGGGGAA CGCAAAATGA
TGATATTACC CAGGAAACTG AGGAAGTTGT GAATGAAACT GAAAAGAATT TGGGAGATGA GAAGCCTGCA GTTGAAGTAG
AAGTAGCTGA TGGAAACAAG GACAATCCTG CTAATGACAC TGAAGAGAAA GAGCCTGAAG ATAAGGAGAT GACTCTGGAG
GAATACGAGA AAGTGCTGGA AGAGAGAAGG AAGGCCTTCC AAGCACTCAA GACTGAAGGA AGAAAGGTGG ACACTAAAGA
GTTTGCATCC ATGCAACCCT TGTCAAGCAA AAAGGACAAT CATGACATAT TCATTAAACT GGGATCTGAT AAAGATAAGC
GAAAGGAGGC TTTTGAGAAG GAAGAAAAAT CCAAAAAGTC TGTTAGCATC ACCGAATTCC TGAAGCCTGC TGAAGGGGAA
ACTTACTACA GCCCAGGTGG ACGTGGTAGG GGCCGTGGTC GTGGCTCTCG TGGTGGTTTT CGTGGAGGTG TTACCAACAG
TGCACCTGCC CCATCCATTG AAGATCCTGG GCATTTCCCA ACCTTGGGTG GCAAGTGA

>Vigan.04G058900.01
MATMNPFDLL GDDAEDPSQL IAAEQLKAAA AAAAAAAAPK KAPVQQNKPA QLPTKPPPPA QAVRESRNDP VRGGRGGGRG
GGRGFGRGRG FGRDSSNDEN SFPGTGAPYN SGSFEEGDAG KSSERRGYGG PRGPYRGGRR GGFSNGETGE GEEGRPRRAF
DRRSGTGRGN EFKREGAGRG NWGTQNDDIT QETEEVVNET EKNLGDEKPA VEVEVADGNK DNPANDTEEK EPEDKEMTLE
EYEKVLEERR KAFQALKTEG RKVDTKEFAS MQPLSSKKDN HDIFIKLGSD KDKRKEAFEK EEKSKKSVSI TEFLKPAEGE
TYYSPGGRGR GRGRGSRGGF RGGVTNSAPA PSIEDPGHFP TLGGK*