GBrowse Details

Vigan.04G051700.01

Basic Information:
Name: Vigan.04G051700.01
Multiple alignment
Variant Information
Position: Chr04:4717864..4719863 (+ strand)
Length: 2000
Functional Information:
Description: Similar to 60S ribosomal protein L34. [W9RAA1, Morus notabilis.]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L34Ae (IPR008195)
Ribosomal protein L34e, conserved site (IPR018065)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:81.03,97.33,71.79,57.91,99.01,141.72,108.64,73.14
Arabidopsis thaliana homolog: AT1G26880.1
Automatic updates:
Name: NM_001249902 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305798 (LOC100305798), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:4717864..4717929 (+ strand)
Length: 66
Type: five_prime_UTR
Position: Chr04:4717930..4718008 (+ strand)
Length: 79
Type: CDS
Position: Chr04:4718156..4718235 (+ strand)
Length: 80
Type: CDS
Position: Chr04:4719320..4719429 (+ strand)
Length: 110
Type: CDS
Position: Chr04:4719513..4719606 (+ strand)
Length: 94
Type: CDS
Position: Chr04:4719607..4719863 (+ strand)
Length: 257
Type: three_prime_UTR

>Vigan.04G051700.01 class=Sequence position=Chr04:4717864..4719863 (+ strand)
AAAACATCTA CCCACACGTT GTACCCTAGT TTGTGTCCTC TAGGTTTAAC TCCATTACCT ACGAAAATGG TGCAGAGGCT
CACTTATCGC AAGCGCCATA GCTATGCCAC CAAATCAAAT CAGCACCGGA TTGTTAAGAC ACCTGGTAAG TGTCTTCTCT
TATTATTTTC TCTTTGCGAT CTTTTTTCCA ATCTGTATAT TTTGTTCTTA TCTCAATTGT GTTTCTCAAT TTGTTGTCAA
AATTATGTTT TGCAATTGCT GTTTGGTGTT TTAACACATG GGTATGCATC AGGTGGGAAG TTGGTGTACC AGAGCACTAA
GAAGAGGGCT AGTGGACCCA AGTGTCCTGT CACTGGGAAG AGGATCCAAG GGGTATGTAG TGTGTGCTAT TTACGTTTTT
TTCGTATGCT CTTTGAAGAG TAAGGAACTG TAATTCATTG TGAAGAATTC CAATTATATG CTACATAGAG AGATCTCATG
CTTTGTATGC TGTGGGTAAA CATGTTTATG TTGTGTCCTA TTAGATAGGT TTAACCGAAA AATTTAAGGG TTGTTCTTTA
TTTTTTATTT TTTTCCATTT GGTGGGGTGC CTAATTGTTT GTAAAATTGT GCATTTTTGG TCCTGGTATG TGTCCATATG
TGTGAATTGG TTATAGGATA ATTAGGGATT GGTTGTGGGA ATGGGATTGA GCTGTTTTTA ATTATTTATA TCAGTTATCT
TATGGAAATG AGTTGTTTGT CGGTTTCAGG AGAATGGATG CTTTAATTTT CTTTTGCTTT TAGAGTTTTT TGGCGACATT
AATTCTTAAA TAACTAAATT TAGCTAATGA AAATATGAAT GATTTAAAAG GGTCACGCAA TGAATGTTTT TGCCGCAGCT
TATTACTTCT AGCTGACCTT ATTAATTTCT TCGTTAGTCT CTTTGAAAGA GCAAGGTTTC TCTTTCAAAA ATGGTTTATA
ACATTCCGAT ACTTTTTTTT CCCAATAAGT CTAATGGAAA AGCTTATAAA ATACTGTATC TGAATTATTC TAGTAAGTTT
AAATGATTTA ATATGACCAT GTATATCTCA TTACACTTAA TATTATGGAG GGTTTATCTA AGCTTATATT CATATTCCAA
TAAGCTCTCA TATAACTTGG GGAAGCAATT TGAACACAAT TTTATTTAGC ACTTGTCATA TAAGTGCTGA TGTGCAAGCT
TTTTATAATG AGAGAAAATT GAGTTGAATT GTTTCGTATA AATGGTAAAC TGTGTTCACA AGTAATCCAA AGTAATCCCA
GGAGCTTATT AGAATCAACT GAAAGTTTTG TTCGATCTTG GTACATTATA CTTTGTTTTT TCACTAATCT TTTACGTAAG
TGTTCCACTG TAACTCAACC CCATTATCCT TACTTAAAGT GTTTAATCAA GTTGTTGGTC TTGTCTCTTA ATTTTGTAAT
GCTGATTTAT CTGCAGATCC CCCACTTGAG ACCTACTGAA TACAAGAGGT CTAGATTGTC TAGGAACCGC CGGACAGTTA
ACCGGGCCTA TGGAGGTGTT TTATCTGGTG GAGCTGTTAG AGAAAGGTAT ATTGCTTAGA AGATCGTTGG GCATGTTTTT
CATTTTTCTT TGTTGAGTTA AATTTAACAA CTATTTAAAC TTGTTATAGG ATTATTCGGG CTTTCCTCGT TGAAGAACAG
AAAATTGTGA AAAAGGTATT GAAGATCCAG AAGGCAAAAG AAAAGCAGGC CGCTAAGAGT TAAGCTGATT AATATCTTGT
CGTTAAGAAT TGTGCTAAAG AATTTTGGCT TTGGTGTTGA TCATGAATCT GGAACTTAAT TTGAAATTGA TTTTATGATT
TTTGTTTCTT TTTGGTAGCT TAAATCAATG ATATGAAATT GGTACTTGGT AGTTTATTGG GAATTCTATA TTTAGTGTAG
GATTTCGATT TGAAGGATAG AATAACTGAA ACCATTTAAG GTTTTTTGTG TTTAGTAGGT AGTTTAAAAC CCTTTAATAA

>Vigan.04G051700.01
AAAACATCTA CCCACACGTT GTACCCTAGT TTGTGTCCTC TAGGTTTAAC TCCATTACCT ACGAAAATGG TGCAGAGGCT
CACTTATCGC AAGCGCCATA GCTATGCCAC CAAATCAAAT CAGCACCGGA TTGTTAAGAC ACCTGGTGGG AAGTTGGTGT
ACCAGAGCAC TAAGAAGAGG GCTAGTGGAC CCAAGTGTCC TGTCACTGGG AAGAGGATCC AAGGGATCCC CCACTTGAGA
CCTACTGAAT ACAAGAGGTC TAGATTGTCT AGGAACCGCC GGACAGTTAA CCGGGCCTAT GGAGGTGTTT TATCTGGTGG
AGCTGTTAGA GAAAGGATTA TTCGGGCTTT CCTCGTTGAA GAACAGAAAA TTGTGAAAAA GGTATTGAAG ATCCAGAAGG
CAAAAGAAAA GCAGGCCGCT AAGAGTTAAG CTGATTAATA TCTTGTCGTT AAGAATTGTG CTAAAGAATT TTGGCTTTGG
TGTTGATCAT GAATCTGGAA CTTAATTTGA AATTGATTTT ATGATTTTTG TTTCTTTTTG GTAGCTTAAA TCAATGATAT
GAAATTGGTA CTTGGTAGTT TATTGGGAAT TCTATATTTA GTGTAGGATT TCGATTTGAA GGATAGAATA ACTGAAACCA
TTTAAGGTTT TTTGTGTTTA GTAGGTAGTT TAAAACCCTT TAATAA

>Vigan.04G051700.01
ATGGTGCAGA GGCTCACTTA TCGCAAGCGC CATAGCTATG CCACCAAATC AAATCAGCAC CGGATTGTTA AGACACCTGG
TGGGAAGTTG GTGTACCAGA GCACTAAGAA GAGGGCTAGT GGACCCAAGT GTCCTGTCAC TGGGAAGAGG ATCCAAGGGA
TCCCCCACTT GAGACCTACT GAATACAAGA GGTCTAGATT GTCTAGGAAC CGCCGGACAG TTAACCGGGC CTATGGAGGT
GTTTTATCTG GTGGAGCTGT TAGAGAAAGG ATTATTCGGG CTTTCCTCGT TGAAGAACAG AAAATTGTGA AAAAGGTATT
GAAGATCCAG AAGGCAAAAG AAAAGCAGGC CGCTAAGAGT TAA

>Vigan.04G051700.01
MVQRLTYRKR HSYATKSNQH RIVKTPGGKL VYQSTKKRAS GPKCPVTGKR IQGIPHLRPT EYKRSRLSRN RRTVNRAYGG
VLSGGAVRER IIRAFLVEEQ KIVKKVLKIQ KAKEKQAAKS *