GBrowse Details

Vigan.04G048700.01

Basic Information:
Name: Vigan.04G048700.01
Multiple alignment
Variant Information
Position: Chr04:4344750..4346258 (+ strand)
Length: 1509
Functional Information:
Description: Similar to esterase HI_1161-like isoform X1. [XP_004488177.1, Cicer arietinum]
InterPro: Phenylacetic acid degradation-related domain (IPR003736)
Thioesterase superfamily (IPR006683)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.94,0.00,8.94,4.77,21.85,14.76,8.84,10.82
Arabidopsis thaliana homolog: AT1G48320.1
Automatic updates:
Name: NM_001248256 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527631 (LOC100527631), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:4344750..4344949 (+ strand)
Length: 200
Type: five_prime_UTR
Position: Chr04:4344950..4345081 (+ strand)
Length: 132
Type: CDS
Position: Chr04:4345200..4345391 (+ strand)
Length: 192
Type: CDS
Position: Chr04:4345900..4346052 (+ strand)
Length: 153
Type: CDS
Position: Chr04:4346053..4346258 (+ strand)
Length: 206
Type: three_prime_UTR

>Vigan.04G048700.01 class=Sequence position=Chr04:4344750..4346258 (+ strand)
TATCCAAAAA GTCAGAAATT GAGTTTTAGA GCTTACCTTC CACAACGTGA AAAACTCTCT CACCTACCAC CAACTCTCGT
TCGTCCCATT CATGGTATAA AAAAGAACGA AGATTTCCGC TGTCATCTTG TTTCTCATGA CAAGTTCTTC ATCATAGTTT
ATTCCCACCA AACCCATTTT TCATCGAACT TTGCTGATAA ATGGAAAACC GGCAGCAATC ATCAAAAACT TCTGAACTAG
ATGCTCCTCT CCATTCAATT GGATTTGAGA TTCAAGATTT GTCTCCAAAA AGGGTAACTG GCTATCTCCC TGTTACACAA
AAGTGCTGCC AGGTTTTGCT TTCTTTTCCT CCAAACCACA CAAAAAAAGA AACCTTTTAC TTTGTTCTGG TTTTTTGTTT
GTCTTTAGTA AAGATGGGAA CTTGATGGTT TAATTTTGCA CATGGTGAAG CCCTTCAAGG TGCTGCACGG AGGCGTGTCG
GCATTGGTGG CAGAGGCTCT TGCGAGCATA GGTGCCCACA TGGCTGGTGG TTACAAAAGA GTGGCTGGGA TTCAGCTCAG
CATCAACCAT TTGAAAAGTG CTGTGCTTGG TGACATGGTC TATGCAGAAG CTACCCCTGT AAATGTTGGC AAAACCATTC
AGGTATTTCA ATTTCTTCTT TCTCTTCTTC TTGGCTTACT CCACAGATCC AATCAAATAG ACTAAAAATC AAACTAATTG
ATAATAAACT ACCTCATGAT GTTCTTGTTT TCTGGTTAGA ATAAATGTGC ACGTGTTGTT GACCCAAAAG AGTAAAGTCC
GTAGGGACAC TATGGTCGGT AACATGGTAA GGAAAAAGAA GAGGAAATAG TGAACTTGGT ATATGAAATT GTATTTTTTT
GTTCATTTTT ATTTCTTTAT TAAGCAAGTT ATACATCTGT CTGAAATATA TACTAAATAT TAAAATGATA GAAGCTTTGA
TTTCAAATAT TTCTTTTTTA GATTGGCATC TGTGACAAAT AAAATACCAA GATAGGTTGA ATTATTATTT ATAATCTGGC
TTTAGGAATT GATTGGAACT AATAACCCTG TAAGTATATT TTAGGATCTG TTTTTAAGAC CATTCGTTTG AGATTAGTTT
GTTTCCCATC TAAGTTTTTC ATGAAATCAG GTATGGGAGG TGAGAATCTG GAAGCTTGAT CCTTCAAACA AAGAAAAGAG
ATCTCTGACA TCATCGTCAA GGGTTACTCT ACTCGCCAAC ATGCCTGTCC CAGACAATGC AAAAGATGCA GCAGAAACAC
TCAGGAAGTA TTCTAGACTG TGAATATTCC TGCTGTTTAA TTTACTTCTG CATAACCAAA ACTTTCTTCT TTTCTGAAAT
ACAATGAGGA AAAGATTGTT TTGAGGGTCT AAGAAAAGCA TCACTGGTGC TTCAAAATGT AAACCATTGT AATAATTTAT
TGCTTAAATG GAATGACAAT TTCTTGTGAT TATAAACTGA TTAATATATG CGATTTTTTT TTTCTGATA

>Vigan.04G048700.01
TATCCAAAAA GTCAGAAATT GAGTTTTAGA GCTTACCTTC CACAACGTGA AAAACTCTCT CACCTACCAC CAACTCTCGT
TCGTCCCATT CATGGTATAA AAAAGAACGA AGATTTCCGC TGTCATCTTG TTTCTCATGA CAAGTTCTTC ATCATAGTTT
ATTCCCACCA AACCCATTTT TCATCGAACT TTGCTGATAA ATGGAAAACC GGCAGCAATC ATCAAAAACT TCTGAACTAG
ATGCTCCTCT CCATTCAATT GGATTTGAGA TTCAAGATTT GTCTCCAAAA AGGGTAACTG GCTATCTCCC TGTTACACAA
AAGTGCTGCC AGCCCTTCAA GGTGCTGCAC GGAGGCGTGT CGGCATTGGT GGCAGAGGCT CTTGCGAGCA TAGGTGCCCA
CATGGCTGGT GGTTACAAAA GAGTGGCTGG GATTCAGCTC AGCATCAACC ATTTGAAAAG TGCTGTGCTT GGTGACATGG
TCTATGCAGA AGCTACCCCT GTAAATGTTG GCAAAACCAT TCAGGTATGG GAGGTGAGAA TCTGGAAGCT TGATCCTTCA
AACAAAGAAA AGAGATCTCT GACATCATCG TCAAGGGTTA CTCTACTCGC CAACATGCCT GTCCCAGACA ATGCAAAAGA
TGCAGCAGAA ACACTCAGGA AGTATTCTAG ACTGTGAATA TTCCTGCTGT TTAATTTACT TCTGCATAAC CAAAACTTTC
TTCTTTTCTG AAATACAATG AGGAAAAGAT TGTTTTGAGG GTCTAAGAAA AGCATCACTG GTGCTTCAAA ATGTAAACCA
TTGTAATAAT TTATTGCTTA AATGGAATGA CAATTTCTTG TGATTATAAA CTGATTAATA TATGCGATTT TTTTTTTCTG
ATA

>Vigan.04G048700.01
ATGGAAAACC GGCAGCAATC ATCAAAAACT TCTGAACTAG ATGCTCCTCT CCATTCAATT GGATTTGAGA TTCAAGATTT
GTCTCCAAAA AGGGTAACTG GCTATCTCCC TGTTACACAA AAGTGCTGCC AGCCCTTCAA GGTGCTGCAC GGAGGCGTGT
CGGCATTGGT GGCAGAGGCT CTTGCGAGCA TAGGTGCCCA CATGGCTGGT GGTTACAAAA GAGTGGCTGG GATTCAGCTC
AGCATCAACC ATTTGAAAAG TGCTGTGCTT GGTGACATGG TCTATGCAGA AGCTACCCCT GTAAATGTTG GCAAAACCAT
TCAGGTATGG GAGGTGAGAA TCTGGAAGCT TGATCCTTCA AACAAAGAAA AGAGATCTCT GACATCATCG TCAAGGGTTA
CTCTACTCGC CAACATGCCT GTCCCAGACA ATGCAAAAGA TGCAGCAGAA ACACTCAGGA AGTATTCTAG ACTGTGA

>Vigan.04G048700.01
MENRQQSSKT SELDAPLHSI GFEIQDLSPK RVTGYLPVTQ KCCQPFKVLH GGVSALVAEA LASIGAHMAG GYKRVAGIQL
SINHLKSAVL GDMVYAEATP VNVGKTIQVW EVRIWKLDPS NKEKRSLTSS SRVTLLANMP VPDNAKDAAE TLRKYSRL*