GBrowse Details

Vigan.04G044500.01

Basic Information:
Name: Vigan.04G044500.01
Multiple alignment
Variant Information
Position: Chr04:4045524..4049229 (+ strand)
Length: 3706
Functional Information:
Description: Similar to Uncharacterized protein. [I1KWC5, Glycine max]
InterPro: Membrane-anchored ubiquitin-fold protein, HCG-1 (IPR017000)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.11,11.67,12.76,23.24,16.26,13.70,12.60,16.95
Arabidopsis thaliana homolog: AT5G15460.1
Automatic updates:
Name: NM_001249377 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306015 (LOC100306015), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:4045524..4046268 (+ strand)
Length: 745
Type: five_prime_UTR
Position: Chr04:4046269..4046401 (+ strand)
Length: 133
Type: CDS
Position: Chr04:4047804..4047968 (+ strand)
Length: 165
Type: CDS
Position: Chr04:4048818..4048873 (+ strand)
Length: 56
Type: CDS
Position: Chr04:4048874..4049229 (+ strand)
Length: 356
Type: three_prime_UTR

>Vigan.04G044500.01 class=Sequence position=Chr04:4045524..4049229 (+ strand)
AAAATAAAGC ATCCACTTTC CCTTTTTCTT CTTCTTGTTC TTCGTCTTCC ATTTGGGTTT TCCCAAAAGT GAAAAGCCAA
TTCACCCCTC AGATCAGTGA CGCACATACC CATCTAAGAA ACCCCACATC AACAAAAACT CAGGTTTTTC CATAATCTGT
TCTTTTTTTT TTCTTCCTTT TCTCAATCCT TGCTTGTTTT GCAGGTGACC CAGTTGAAAA TTCGAGATTA TTTTTTCTTG
TTTGATGCGT ACCCATTTCA AGATTGGATC TCTTCTTGAT TTAGCTGTTT GAGATTCTCT CTTTTTTTTT TGGCTGGCGA
CAGTGTGTTG AATTATGTTA TGATGTTGGA TTTCAACAAT TTCATTACCC TTTTTTGTAA TTTGTTTTTA TTTTGTGAGA
AGATGTATCC ACCTCAGTTA TTCACGATTT CTTCGTTCAT ATTCTTATTA AACGATTTTT TTCATAAGAA ATTTTCATAC
CTCTCCAAAT TTTTCCTGAT ATAATAGATT CTAATATGTT TAGTGAGCAT GGATGCGTGC ATGAGAGGGC TCTAACTCAA
CCTTTTCTTT TGTGTCTGAA CTTTGCAGAA CTCACAAGAT TGGCTTTGAA TGAAATCCTG TTTTTCACTG ATGAAACTTA
GCTGAACGAA TTGATTCAGT GGAAAACCTA TTTTTCATAA TATTTGACGT AAAACTGAAG CTGTAATATT TCTTTTAACT
ACACGAGTTC GTTGGATCTC CGAACATGGC TGGGAATCAA GATCAGTTTG AGATCAAGTT TCGGCTGACT GATGGCTCTG
ATATTGGCCC GAAAAGTTTT CCTGCAGCTA CTAGTATTGC AACATTAAAG GAGAGTGTTC TTGCTCAGTG GCCAAAAGGT
TACTCGTGTT ACTGTTGTTT TTTTTCTTTT TACTTCTCTT TTTTGTTCTT CTGGTTTAAT AGCTAAATTT CCATGTTAGA
ACTGAGAAGA TGTAATATTG TTCTGGTGCT GTGCGGAACT CTGTGGTATA AATTAAGAGA CTTCTGGTTT GGGTGGTTTC
GAAACAGGGT GATTGAGGGT GCATGAATAT TTATGTTGGT TGTATTATTT TGGTTATAAA AAAGTTCTAA GACCTGGTAT
GGGCAAGCAT AGTGGGCTGA AGAAGGTACA AAGTGACCTT AGAAAGATTG TTAACAGGAT GAAGTAGTCC CTTAAGGAAC
CTGATGTCAC CTCAGTTGAG GCTCTTGGGC TTAACGAACT TTTATTTTAG AAGATTTACG CTGGGGGCGA ATAATTTATA
AATTCCTTTT AACATATAAC TATTACTTCT TGAGTGAGTG CAGAAGTGGT CTCCGTTTTC CATTGCCAAA ATGATGAAGA
GCAATTGAAA TAGTTCATTC TTTTGATGAG ATAAGAAAAT TAACTATATG AACAAAAATA TTTTCCATTT AGTGTTATAC
AGTTACTTTT AATATTAGTC AAAGATATGC CGTCCGGCAT ATATGCATAC TTATGTTTAA TGCGTCAATG TTGGTCAATT
CCTTGAGAAG ACTTTACTAA CATTAACAGA ACGGCATTTT GTTTTCATAT AAAGGCTCTT TTGGGAGTTT ATAAATTCTG
AAAGTATCTA AGGTGATAAG ACCTGTATAA CAGCCTTAAA TTAAAAATGT GGGCAGTCTT GGCATAAGTC CCTTTTTTTT
ATAGTTCATC ACCAAGGAGT ATCACCCGTC AAACGCCCGA ACTAGCTTCA TTAGGGGGTT TGGTAGACTC TGAATAGGTG
GACATTCCCT CCCAGCTTGA GTATAGGTCC CTAGTTTAGT TGTTTATTTC TTAAACCTCA ATTTCTTCTC CCATGTACTG
GCTTTACTTG CTTAGGAGGA TTGATGCCTA CCGATTGTTA GCAGTGTAGT TACAAGGAGA TATTATGTGT CTTATGATTT
TCCTATTTCT TTAAACTGAA ACTTTCTAAA TTTTGAGAGG ATGTTTGTAG CTTAGAGTCC ACGCAATTGT TCATTGTTTA
TGGATAGATG TGTGTAAACA TAGTATTTAT GTCCTTATAT TGAGAATCAA GGTACCATTT TCCATGGTAC GCTACAACTT
TCTGGCATAT TATAAGATAT AACTAAAATG ACATTTTCCA ATAGTTGTAT TTCACAAAGT TAGCAAGACT AAAACTGATA
TCTTCAATTA GATTCTGTGG TGAATTCTGA TGTTGGTCAT ATTGTGAGCT TCTTGCTAAA ATTTTTCCGT GGTGTTTTTG
TGATATATGA GATTTATAAG TTTGTGTTTT TGTTTTGAAG ACAAGGAGAA TGGACCAAGG ACCATAAAAG ATGTGAAGTT
GATCAGCGCA GGAAAAATAT TGGAGAACAA CAGAACAGTT GGGGAATGCC AGAGCCCATT ATGTGATACT CCTGATACAG
TTACGACAAT GCATGTGGTT GTCCAACATC CTGCTACAGA GAAAGGTCTT TTATTTTTTG TTTATTTGAG ACATGCCTAA
AGCTAGTCTT AATAGCTTTT GTATTTTTTT TAGTAAGCAA TTTTTTTTTT TTTTGCTCAT TTCAGCAAAA AATGCCTTCG
TAATTACACT TTCTTAGTAC AAGAAATAGT TAAATTCTTT TGTGTCATCT TTTTATTTGG GATTGTCGTT TAATCACTTG
AGGGTCAAAT ATCACTTACA TTGTTGGCAT AAATTTATTT TTTAAGAGTA TTTGTAGAAA TTATAGGTTT TTAGGTATAG
AGGGAATAAC AGAAGATCAA AGAAACTAAT TCACTAAAAT ATAGACCCTA AGCTTCTTTT AGAAAAGTGA TTTTATGATA
TAAGTTATAT ATATATATAT ATATATATAT ATATATATAT ATATATAGAA ATAAATCTTT CTTGCTCGAG AAATCCACTG
AGGTTCTTTT TGCCTAAAAA GTTGTTTTTC TTCGTGAGAG AGAAACAAAC AAATGGGTCA TTGATGTGTG TCAAATTACT
ATTTGTTCTA ATGCATTTCT TAGACTTATC TTGTGTCGGA CAAAACAGTA ACCATCTTTT TGAAAAATTC AAATAAAAAG
ACAGTCTTTC CTGAAAATTA TGGGAGAAAT AGAAAACTGA AAGATAAAAT TTGTAGTAGG TACTTAATAA CTAGAAGAAC
TTCTTTGGGA ACAATTTTGT TTTAATTGTC AGTTAGTAGC ATTTCCAGAA CTAAAATAAC CACTCGCATC TAAATGAAAA
AGTGGTGCTA TTCTGTTTGA CTGATTTTGT TTTCATTCAG TCATGGTGCC TTATCCGGTA GTTGCTGATA ATTTAATATT
TTTGCCCGAT ACAGAGAAGA AAGCTGCAAG CCAAGCAACA CAGAACAAAT GTATGTGTAT TATCTTATAG CATCCAGATT
GAATAGCAGA TGTCATCTAT CTTAGAAGGT TAGGGACACT TCATTTTTAC GTAACCTGCG GCGTTGAAGA TTTCAACATA
CACAGATTAT TTGGTTGCAT GTGTCATTCA TACTACAGGC AAAGAGTACT GGACTGTTTA CCTAAAAAAA GCACTTTACT
TGGTGAAGAT TGTGAAACTA GTAGTTCCCT GATTCCTCTG CGGCTCTATA TTTCTTGCAC AATTTGATAG GAGATGTTCT
TCTGCTGGTC TCAACATGTA TTAGGTGTTG CCTCATCAGG CACTTGTTAT ATTGAAATGA ACAATACTAG TTTGCCATCT
TGCACCTCAT ATATACTTTA CAATTC

>Vigan.04G044500.01
AAAATAAAGC ATCCACTTTC CCTTTTTCTT CTTCTTGTTC TTCGTCTTCC ATTTGGGTTT TCCCAAAAGT GAAAAGCCAA
TTCACCCCTC AGATCAGTGA CGCACATACC CATCTAAGAA ACCCCACATC AACAAAAACT CAGGTTTTTC CATAATCTGT
TCTTTTTTTT TTCTTCCTTT TCTCAATCCT TGCTTGTTTT GCAGGTGACC CAGTTGAAAA TTCGAGATTA TTTTTTCTTG
TTTGATGCGT ACCCATTTCA AGATTGGATC TCTTCTTGAT TTAGCTGTTT GAGATTCTCT CTTTTTTTTT TGGCTGGCGA
CAGTGTGTTG AATTATGTTA TGATGTTGGA TTTCAACAAT TTCATTACCC TTTTTTGTAA TTTGTTTTTA TTTTGTGAGA
AGATGTATCC ACCTCAGTTA TTCACGATTT CTTCGTTCAT ATTCTTATTA AACGATTTTT TTCATAAGAA ATTTTCATAC
CTCTCCAAAT TTTTCCTGAT ATAATAGATT CTAATATGTT TAGTGAGCAT GGATGCGTGC ATGAGAGGGC TCTAACTCAA
CCTTTTCTTT TGTGTCTGAA CTTTGCAGAA CTCACAAGAT TGGCTTTGAA TGAAATCCTG TTTTTCACTG ATGAAACTTA
GCTGAACGAA TTGATTCAGT GGAAAACCTA TTTTTCATAA TATTTGACGT AAAACTGAAG CTGTAATATT TCTTTTAACT
ACACGAGTTC GTTGGATCTC CGAACATGGC TGGGAATCAA GATCAGTTTG AGATCAAGTT TCGGCTGACT GATGGCTCTG
ATATTGGCCC GAAAAGTTTT CCTGCAGCTA CTAGTATTGC AACATTAAAG GAGAGTGTTC TTGCTCAGTG GCCAAAAGAC
AAGGAGAATG GACCAAGGAC CATAAAAGAT GTGAAGTTGA TCAGCGCAGG AAAAATATTG GAGAACAACA GAACAGTTGG
GGAATGCCAG AGCCCATTAT GTGATACTCC TGATACAGTT ACGACAATGC ATGTGGTTGT CCAACATCCT GCTACAGAGA
AAGAGAAGAA AGCTGCAAGC CAAGCAACAC AGAACAAATG TATGTGTATT ATCTTATAGC ATCCAGATTG AATAGCAGAT
GTCATCTATC TTAGAAGGTT AGGGACACTT CATTTTTACG TAACCTGCGG CGTTGAAGAT TTCAACATAC ACAGATTATT
TGGTTGCATG TGTCATTCAT ACTACAGGCA AAGAGTACTG GACTGTTTAC CTAAAAAAAG CACTTTACTT GGTGAAGATT
GTGAAACTAG TAGTTCCCTG ATTCCTCTGC GGCTCTATAT TTCTTGCACA ATTTGATAGG AGATGTTCTT CTGCTGGTCT
CAACATGTAT TAGGTGTTGC CTCATCAGGC ACTTGTTATA TTGAAATGAA CAATACTAGT TTGCCATCTT GCACCTCATA
TATACTTTAC AATTC

>Vigan.04G044500.01
ATGGCTGGGA ATCAAGATCA GTTTGAGATC AAGTTTCGGC TGACTGATGG CTCTGATATT GGCCCGAAAA GTTTTCCTGC
AGCTACTAGT ATTGCAACAT TAAAGGAGAG TGTTCTTGCT CAGTGGCCAA AAGACAAGGA GAATGGACCA AGGACCATAA
AAGATGTGAA GTTGATCAGC GCAGGAAAAA TATTGGAGAA CAACAGAACA GTTGGGGAAT GCCAGAGCCC ATTATGTGAT
ACTCCTGATA CAGTTACGAC AATGCATGTG GTTGTCCAAC ATCCTGCTAC AGAGAAAGAG AAGAAAGCTG CAAGCCAAGC
AACACAGAAC AAATGTATGT GTATTATCTT ATAG

>Vigan.04G044500.01
MAGNQDQFEI KFRLTDGSDI GPKSFPAATS IATLKESVLA QWPKDKENGP RTIKDVKLIS AGKILENNRT VGECQSPLCD
TPDTVTTMHV VVQHPATEKE KKAASQATQN KCMCIIL*