GBrowse Details

Vigan.04G018500.01

Basic Information:
Name: Vigan.04G018500.01
Multiple alignment
Variant Information
Position: Chr04:1604880..1606504 (+ strand)
Length: 1625
Functional Information:
Description: Similar to Uncharacterized protein. [I1N520, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Aldo/keto reductase (IPR001395)
Aldo/keto reductase, conserved site (IPR018170)
Aldo/keto reductase subgroup (IPR020471)
NADP-dependent oxidoreductase domain (IPR023210)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.61,0.76,33.16,4.44,476.96,4.89,839.31,2.56
Automatic updates:
Name: MH450283 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula chalcone reductase (CHR1) mRNA, partial cds.
PubMed ID: -
Status: Known Variant
Name: NM_001367006 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chalcone reductase CHR5 (CHR5), mRNA.
PubMed ID: 29979476 NCBI(pubmed)
29270182 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:1604880..1605115 (+ strand)
Length: 236
Type: five_prime_UTR
Position: Chr04:1605116..1605438 (+ strand)
Length: 323
Type: CDS
Position: Chr04:1605586..1605829 (+ strand)
Length: 244
Type: CDS
Position: Chr04:1605918..1606094 (+ strand)
Length: 177
Type: CDS
Position: Chr04:1606175..1606369 (+ strand)
Length: 195
Type: CDS
Position: Chr04:1606370..1606504 (+ strand)
Length: 135
Type: three_prime_UTR

>Vigan.04G018500.01 class=Sequence position=Chr04:1604880..1606504 (+ strand)
ATTAAAGTGC TGTTTTTGTT TGGTCCAAGT ACGTCGAAAA ACAACAGACA TTAAGAATTC AAAACACATG TATTCGATTA
GCACGAACAC CAGCTACCCC AAAGTGGAGA TAATCACTAC TAAACCCACC TACCCACTCT GCTTCTTCAA ACTTTCCATG
CCTATAAAAG GACTTCTCTG TCACCTTTTT TCTGACATAA TCAAACTAAC CAAACCCAAT TCACCATTCT TCTCCGATGG
CTGCCACCAC AATCCCCCAA GTCACTCTCC ACTCTTCCTC CGGCCACCGC AAGATGCCGG TCATCGGCCT CGGCACCGCG
CCGGAAGCCA CCAGCGCCGT CACCACAAAA GATGCCGTTC TCGAGGCCAT CAAGCAGGGC TACCGACACT TCGATGCTGC
TTCCGCCTAT GGCGTCGAAC AGTCCGTGGG AGAAGCCATA GCAGAAGCTC TTAAGCTTGG ACTCATTCAA TCCAGAGACG
AACTCTTCGT CACTTCCAAA TTGTGGGTCA CCGATAACCA TGCACATACC ATTGTTCCAG CTCTCCAGAA ATCTCTCAGG
TCAACACACT TTCCAATTCA CACCACTTCT TTACGTAATG AAATTCACGT TTAAACTATT TTTCTGCCCT CACTCTTTCT
TTCTTTACTT TCCAAGCTAT CAAAATTTCA ACTTTGTAAT AGTTTCCATG TTTGTTATTC ATGCAGGACT CTCCAGCTGG
AGTACTTGGA TCTCTACCTT ATCCACTGGC CCATTGCTAC CAAGCCTGGG AAAGTTGTGT ACCCCATTGA AGTATCGGAG
ATAGTGGAGT TTGACTTGAA GGGTGTGTGG GAATCCATGG AAGAATGCCA GAAACTTGGT CTCACCAAAG CCATTGGAGT
CAGCAACTTC TCCATCAGCA AGCTTGAAAA ATTGCTCTCT TTTGCCACCA TTCCTCCTGC AGTGAATCAA GTAATTAATT
TAACATACAA TAATTAAGTT AACAGTATAT AAATTAGTTT AATCACCATT GAACTAAACC TTGAACAATC GTAAACAGGT
TGAAGTTAAC CTTGGGTGGC AACAGCAGCA GCTGAGAGAA TTCTGCAAGG AAAAGGGTAT CACTGTGACT GCTTTTTCAC
CCCTGAGGAA GGGTGCTAGC AGAGGTGCTA ATCTTGTGAT GGACAATGAT ATACTCAAAG AATTGTCTGA TGCTCATGGC
AAAACCGTTG CTCAGGTAGA CAGACACTGA TTAAATTCTT CTCGGTAGTA TATGTGTTTT TTTGTGTTCG GAAAACTGAT
GTGAAAAATT TGCAGATTTG TCTTCGATGG CTGTACGAAC AAGATCTGAC CTTTGTGGCG AAGAGCTACG ACAAAGATAG
GATGAAGCAG AACTTGGGGA TTTTCGATTG GTCGTTGACT GAGGATGATT ACAGGAAGAT AGCCGAAATC CATCAAGACA
GGCTCATCAA AGGACCAACC AAGCCTCTTC TTGATGATCT TTGGGAATGA AATTTCATTT AATTTCACAG TGCCAGTGTT
TGCTTGTTAC TTTCTCTGAG AAAATAAAGC AAGTGTCATC ATTTTGTTGA TCGTAATAAT TAGTCAACTT CTTGTTGTTT
TGGTGTGCTA ATTTTCTTAT TCGAG

>Vigan.04G018500.01
ATTAAAGTGC TGTTTTTGTT TGGTCCAAGT ACGTCGAAAA ACAACAGACA TTAAGAATTC AAAACACATG TATTCGATTA
GCACGAACAC CAGCTACCCC AAAGTGGAGA TAATCACTAC TAAACCCACC TACCCACTCT GCTTCTTCAA ACTTTCCATG
CCTATAAAAG GACTTCTCTG TCACCTTTTT TCTGACATAA TCAAACTAAC CAAACCCAAT TCACCATTCT TCTCCGATGG
CTGCCACCAC AATCCCCCAA GTCACTCTCC ACTCTTCCTC CGGCCACCGC AAGATGCCGG TCATCGGCCT CGGCACCGCG
CCGGAAGCCA CCAGCGCCGT CACCACAAAA GATGCCGTTC TCGAGGCCAT CAAGCAGGGC TACCGACACT TCGATGCTGC
TTCCGCCTAT GGCGTCGAAC AGTCCGTGGG AGAAGCCATA GCAGAAGCTC TTAAGCTTGG ACTCATTCAA TCCAGAGACG
AACTCTTCGT CACTTCCAAA TTGTGGGTCA CCGATAACCA TGCACATACC ATTGTTCCAG CTCTCCAGAA ATCTCTCAGG
ACTCTCCAGC TGGAGTACTT GGATCTCTAC CTTATCCACT GGCCCATTGC TACCAAGCCT GGGAAAGTTG TGTACCCCAT
TGAAGTATCG GAGATAGTGG AGTTTGACTT GAAGGGTGTG TGGGAATCCA TGGAAGAATG CCAGAAACTT GGTCTCACCA
AAGCCATTGG AGTCAGCAAC TTCTCCATCA GCAAGCTTGA AAAATTGCTC TCTTTTGCCA CCATTCCTCC TGCAGTGAAT
CAAGTTGAAG TTAACCTTGG GTGGCAACAG CAGCAGCTGA GAGAATTCTG CAAGGAAAAG GGTATCACTG TGACTGCTTT
TTCACCCCTG AGGAAGGGTG CTAGCAGAGG TGCTAATCTT GTGATGGACA ATGATATACT CAAAGAATTG TCTGATGCTC
ATGGCAAAAC CGTTGCTCAG ATTTGTCTTC GATGGCTGTA CGAACAAGAT CTGACCTTTG TGGCGAAGAG CTACGACAAA
GATAGGATGA AGCAGAACTT GGGGATTTTC GATTGGTCGT TGACTGAGGA TGATTACAGG AAGATAGCCG AAATCCATCA
AGACAGGCTC ATCAAAGGAC CAACCAAGCC TCTTCTTGAT GATCTTTGGG AATGAAATTT CATTTAATTT CACAGTGCCA
GTGTTTGCTT GTTACTTTCT CTGAGAAAAT AAAGCAAGTG TCATCATTTT GTTGATCGTA ATAATTAGTC AACTTCTTGT
TGTTTTGGTG TGCTAATTTT CTTATTCGAG 

>Vigan.04G018500.01
ATGGCTGCCA CCACAATCCC CCAAGTCACT CTCCACTCTT CCTCCGGCCA CCGCAAGATG CCGGTCATCG GCCTCGGCAC
CGCGCCGGAA GCCACCAGCG CCGTCACCAC AAAAGATGCC GTTCTCGAGG CCATCAAGCA GGGCTACCGA CACTTCGATG
CTGCTTCCGC CTATGGCGTC GAACAGTCCG TGGGAGAAGC CATAGCAGAA GCTCTTAAGC TTGGACTCAT TCAATCCAGA
GACGAACTCT TCGTCACTTC CAAATTGTGG GTCACCGATA ACCATGCACA TACCATTGTT CCAGCTCTCC AGAAATCTCT
CAGGACTCTC CAGCTGGAGT ACTTGGATCT CTACCTTATC CACTGGCCCA TTGCTACCAA GCCTGGGAAA GTTGTGTACC
CCATTGAAGT ATCGGAGATA GTGGAGTTTG ACTTGAAGGG TGTGTGGGAA TCCATGGAAG AATGCCAGAA ACTTGGTCTC
ACCAAAGCCA TTGGAGTCAG CAACTTCTCC ATCAGCAAGC TTGAAAAATT GCTCTCTTTT GCCACCATTC CTCCTGCAGT
GAATCAAGTT GAAGTTAACC TTGGGTGGCA ACAGCAGCAG CTGAGAGAAT TCTGCAAGGA AAAGGGTATC ACTGTGACTG
CTTTTTCACC CCTGAGGAAG GGTGCTAGCA GAGGTGCTAA TCTTGTGATG GACAATGATA TACTCAAAGA ATTGTCTGAT
GCTCATGGCA AAACCGTTGC TCAGATTTGT CTTCGATGGC TGTACGAACA AGATCTGACC TTTGTGGCGA AGAGCTACGA
CAAAGATAGG ATGAAGCAGA ACTTGGGGAT TTTCGATTGG TCGTTGACTG AGGATGATTA CAGGAAGATA GCCGAAATCC
ATCAAGACAG GCTCATCAAA GGACCAACCA AGCCTCTTCT TGATGATCTT TGGGAATGA

>Vigan.04G018500.01
MAATTIPQVT LHSSSGHRKM PVIGLGTAPE ATSAVTTKDA VLEAIKQGYR HFDAASAYGV EQSVGEAIAE ALKLGLIQSR
DELFVTSKLW VTDNHAHTIV PALQKSLRTL QLEYLDLYLI HWPIATKPGK VVYPIEVSEI VEFDLKGVWE SMEECQKLGL
TKAIGVSNFS ISKLEKLLSF ATIPPAVNQV EVNLGWQQQQ LREFCKEKGI TVTAFSPLRK GASRGANLVM DNDILKELSD
AHGKTVAQIC LRWLYEQDLT FVAKSYDKDR MKQNLGIFDW SLTEDDYRKI AEIHQDRLIK GPTKPLLDDL WE*