GBrowse Details

Vigan.04G012200.01

Basic Information:
Name: Vigan.04G012200.01
Multiple alignment
Variant Information
Position: Chr04:1004274..1005345 (+ strand)
Length: 1072
Functional Information:
Description: Similar to Uncharacterized protein. [I1JDN3, Glycine max]
GO: Biological Process: metal ion transport (GO:0030001)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Heavy metal-associated domain, HMA (IPR006121)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.13,14.45,3.67,0.66,3.32,1.12,3.65
Automatic updates:
Name: NM_001249244 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max heavy-metal-associated domain-containing protein (LOC100306004), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:1004274..1004499 (+ strand)
Length: 226
Type: five_prime_UTR
Position: Chr04:1004500..1004568 (+ strand)
Length: 69
Type: CDS
Position: Chr04:1004685..1004760 (+ strand)
Length: 76
Type: CDS
Position: Chr04:1004966..1005261 (+ strand)
Length: 296
Type: CDS
Position: Chr04:1005262..1005345 (+ strand)
Length: 84
Type: three_prime_UTR

>Vigan.04G012200.01 class=Sequence position=Chr04:1004274..1005345 (+ strand)
CACTAATCTA GCTTTATGGG CACCTATCTC CACTACATTT TTTTCGTTTA TTATATTAAT TTAATGTTCT AGACACTGCT
TTCGAAGTTC AACCTTCTCT CCATAGCTGT GAATCTTTAG CTTCCTATAT AAACACCACA CCCTCATCTT TGATTTGTGT
CTGTCTTCTC TCTCACTGAT CTTATTCACT CTCACCATCT TTGCCCTTTG CTTTTTGGAA AGGAAAATGG GTGCACTTAC
CTACATCATC TCCAACTTTT GCACAGTTCC AACCCCAAAG ACCAAAACAA TGCAGGTAGG AACTTCTCAC AACACCATTT
TCTTTCATAC TCTCTTCTTC CCCACACACT TTTCTAACTT TCATTCCTCA ACCATAGCAG CTACTCATAT ATGTGTTGGT
TTTCGTTTTA GACAGTCGAG ATCAAAGTCA AAATGGACTG TGATGGCTGT GAACGAAAAG TCAGAAATGC AGTAGCCACA
ATGAAAGGTT CTAACCTCTA TTCCAAGTTT TAGTACTATT ATATAACATA ATCATATACA TAGTTTAGAA GTCGAAACCA
ATTTAAGTTT AAAACTGACA GTATCTCTCG AATGTAATGA TTGATTTTAT ATTTCTACTA GAGCTTATGT TAGCACATCA
TTATGCAAAA CAAGTTTTAC TAAGGTTAAT GATTTAGTGT GATGTGTTGC AGGAGTAAAA TCTGTGGAGA TAAACCGAAA
GCAAAGCAGG GTGACTGTGA ACGGTTGTGT TGATCCAAAC AAGGTGTTGA ATAGGGTAAA GAGAACTGGG AAGAAAAGAG
CTGAATTTTG GCCCTATGTT CCACAGCATG TGGTGACATA TCCTCATGCC TCCGGCGTCT ATGACAAAAG GGCACCCTCC
GGCTATGTTC GAAACACGCA GACATTTACA CCTTCTGCTG CTGAGACAGA AGAGAAATTC ATGTCCCTTT TCAGTGAAGA
CAACGTAAAT TCATGTTCCA TCATGTAAAA TGTATAACGT AAGCAACAAT ATCTGACAGA ATGGAGAAAC TATATTAGAT
GATGTTATGA GATACAACTT GGATCAATCT TT

>Vigan.04G012200.01
CACTAATCTA GCTTTATGGG CACCTATCTC CACTACATTT TTTTCGTTTA TTATATTAAT TTAATGTTCT AGACACTGCT
TTCGAAGTTC AACCTTCTCT CCATAGCTGT GAATCTTTAG CTTCCTATAT AAACACCACA CCCTCATCTT TGATTTGTGT
CTGTCTTCTC TCTCACTGAT CTTATTCACT CTCACCATCT TTGCCCTTTG CTTTTTGGAA AGGAAAATGG GTGCACTTAC
CTACATCATC TCCAACTTTT GCACAGTTCC AACCCCAAAG ACCAAAACAA TGCAGACAGT CGAGATCAAA GTCAAAATGG
ACTGTGATGG CTGTGAACGA AAAGTCAGAA ATGCAGTAGC CACAATGAAA GGAGTAAAAT CTGTGGAGAT AAACCGAAAG
CAAAGCAGGG TGACTGTGAA CGGTTGTGTT GATCCAAACA AGGTGTTGAA TAGGGTAAAG AGAACTGGGA AGAAAAGAGC
TGAATTTTGG CCCTATGTTC CACAGCATGT GGTGACATAT CCTCATGCCT CCGGCGTCTA TGACAAAAGG GCACCCTCCG
GCTATGTTCG AAACACGCAG ACATTTACAC CTTCTGCTGC TGAGACAGAA GAGAAATTCA TGTCCCTTTT CAGTGAAGAC
AACGTAAATT CATGTTCCAT CATGTAAAAT GTATAACGTA AGCAACAATA TCTGACAGAA TGGAGAAACT ATATTAGATG
ATGTTATGAG ATACAACTTG GATCAATCTT T

>Vigan.04G012200.01
ATGGGTGCAC TTACCTACAT CATCTCCAAC TTTTGCACAG TTCCAACCCC AAAGACCAAA ACAATGCAGA CAGTCGAGAT
CAAAGTCAAA ATGGACTGTG ATGGCTGTGA ACGAAAAGTC AGAAATGCAG TAGCCACAAT GAAAGGAGTA AAATCTGTGG
AGATAAACCG AAAGCAAAGC AGGGTGACTG TGAACGGTTG TGTTGATCCA AACAAGGTGT TGAATAGGGT AAAGAGAACT
GGGAAGAAAA GAGCTGAATT TTGGCCCTAT GTTCCACAGC ATGTGGTGAC ATATCCTCAT GCCTCCGGCG TCTATGACAA
AAGGGCACCC TCCGGCTATG TTCGAAACAC GCAGACATTT ACACCTTCTG CTGCTGAGAC AGAAGAGAAA TTCATGTCCC
TTTTCAGTGA AGACAACGTA AATTCATGTT CCATCATGTA A

>Vigan.04G012200.01
MGALTYIISN FCTVPTPKTK TMQTVEIKVK MDCDGCERKV RNAVATMKGV KSVEINRKQS RVTVNGCVDP NKVLNRVKRT
GKKRAEFWPY VPQHVVTYPH ASGVYDKRAP SGYVRNTQTF TPSAAETEEK FMSLFSEDNV NSCSIM*