GBrowse Details

Vigan.04G006800.01

Basic Information:
Name: Vigan.04G006800.01
Multiple alignment
Variant Information
Position: Chr04:568279..570176 (+ strand)
Length: 1898
Functional Information:
Description: Similar to Uncharacterized protein. [I1N5C2, Glycine max]
InterPro: Lateral organ boundaries, LOB (IPR004883)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.50,2.31,19.09,2.95,159.78,99.13,68 .60,6.24
Arabidopsis thaliana homolog: AT3G02550.1
Automatic updates:
Name: NM_001354072 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max LBD domain-containing transcription factor (LBD37), mRNA.
PubMed ID: 28464070 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:568279..568812 (+ strand)
Length: 534
Type: five_prime_UTR
Position: Chr04:568813..569002 (+ strand)
Length: 190
Type: CDS
Position: Chr04:569185..569897 (+ strand)
Length: 713
Type: CDS
Position: Chr04:569898..570176 (+ strand)
Length: 279
Type: three_prime_UTR

>Vigan.04G006800.01 class=Sequence position=Chr04:568279..570176 (+ strand)
ATTCCGTAAT ATTATACCCC TTTAAAGGGC AGTTTCGAAG GAAACAAATT TAGGACAACC GTGCAGTGCA ATTTGCGCGA
GACACCTCCG AGTCTGTGGC ATTTAAGGGT TATCCCACGT CATCTACGCC CCAATGACAA AGGGATGAGT GTCCTTATGA
TTGGGAGTTG AATGCACGCG TTCCACGTGA GGGTGGGACT GTACCGTGCT AAAACTAGCT GTTTACTTCC TCGAACTGGA
ACCTCTTTGA ACGTGGAAAC CATGGTTTGC CTTTGTGTGT TGGTGTAGTA ATTATTAAAT AAACTACTGC TAATACTATA
AAACAATTCT TCTGAAACAA CTGCGTTCCC CACAACCCAG TACCTGAAAA ATCCACTCTT TCTTTCTCTC TCTTTCTCTC
TCCTTAACCC CCCAACAAAT ATATACCCTC GTTTTGCTCA ATTTTATGAT CACAATCTCA TCTTTCTCTC TTACAGAAAG
AAAAAAACTC TTCAAATTCT CCTGTCTCCA AGATTCTCAA TTGGGTCTTC GAAAATGCGG ATGAGCTGCA ATGGATGTCG
AGTTCTGAGA AAAGGTTGCA GTGAGAATTG CAGCATCAGA CCCTGTTTAC AGTGGATCAA AAGCCCAGAA TCTCAGGCCA
ATGCTACTGT GTTTCTCGCT AAGTTCTACG GCCGTGCTGG GCTCATGAAT CTCGTTAACG CCGGCCCAGA ACATCTTCGT
CCAGGTTTGT GTCATTTACC CAAGCTTTCT TTTGAACAAA TCTAAGTCAC ACGTCGAGTA GAATCAGTGT TGGATAAATA
AAAGCTTGCA ATTTGCAAAG TCCGGCACCG ATGATCTTGT AAATTGATTT TTTGTGTGTG CATGGAATTT ACTAAGCTGA
TGATATGTTT TGTTTGATAT TTGCAGCGAT CTTTCGTTCG TTGTTGTACG AGGCATGCGG TCGGATAGTG AACCCGATTT
ACGGTTCAGT TGGTTTGTTG TGGTCGGGGA GCTGGCAGCT GTGTCAGGCC GCCGTGGAGA ACGTCTTGAA AGGCGCACCG
ATTACGCCGA TCACGTCTGA AGCGGCGGCT AGTGGGCGGG GTCCACCCCT CAAGGCATAC GACATACGCC ACGTGTCAAG
AGACGAGAAC TCGGCCGCGT CGAACGAAAC TCAGCAGCAA CGAGTCAAGA CTCGGTGTAG GGTCCGGCGT CCCGTCGCCA
ACGCCAAGCC CAAATCCACC ACAAACGAAA ACAACGGTGA CAAGGGAACC GAATTGGGGT CTTCTGAACC GGGTTTGGTG
ACATGCGAGT GGACCGAAGA GGCGGTGAAT CGGTCTGGAA GTCACGAATC GTCGCTGAGC CACCAGTCTG AGGCGGCGAA
TGCGGTGGAG AGCGAGAGCA TGGTGTCGGT GGAGACGGCG GAGACTTCGA TCCTCTTCCG AGATGAACCG GATTCAAACC
CGAAGATCGT GCAACGAACC GATGATGTTG GTTTGGAGCT TACGCTTGGG TTCGAACCGG TTTCACGTGC GCAGCACGTG
GTTCCAGTGA AGAAGAGACG GATCGAGTTG AAGGATTTTA GCGGCTCGGC TGAGAGTGGG TCGTGCAAGA TGGAGCTGGG
GCTTGAATGC TCGGCTTGAG CAACTCGACT CTCGGCTCAG TTTTGATTCC ATCGGCTTTA TGTATGTCTT TGATACAAGA
GATCAGAACC CTTTTGTTGT TTTTTTTTCT TTTAATAGTC TTTTTTTTTT CTTTTGTAAT CGGGTTATTT TTAACCCTTT
TTTTTGGAAT GTGAATGCGG TGCAGTACAA ACTCAAACAT GAATGACAAC TTAAGTAGAT TATGAAAAAG GTGCAAATTT
AAAATACCTT ATATTTCAGA ACTGAAAAGA CAGTAATTTG GTCATAATTA GATTCAAA

>Vigan.04G006800.01
ATTCCGTAAT ATTATACCCC TTTAAAGGGC AGTTTCGAAG GAAACAAATT TAGGACAACC GTGCAGTGCA ATTTGCGCGA
GACACCTCCG AGTCTGTGGC ATTTAAGGGT TATCCCACGT CATCTACGCC CCAATGACAA AGGGATGAGT GTCCTTATGA
TTGGGAGTTG AATGCACGCG TTCCACGTGA GGGTGGGACT GTACCGTGCT AAAACTAGCT GTTTACTTCC TCGAACTGGA
ACCTCTTTGA ACGTGGAAAC CATGGTTTGC CTTTGTGTGT TGGTGTAGTA ATTATTAAAT AAACTACTGC TAATACTATA
AAACAATTCT TCTGAAACAA CTGCGTTCCC CACAACCCAG TACCTGAAAA ATCCACTCTT TCTTTCTCTC TCTTTCTCTC
TCCTTAACCC CCCAACAAAT ATATACCCTC GTTTTGCTCA ATTTTATGAT CACAATCTCA TCTTTCTCTC TTACAGAAAG
AAAAAAACTC TTCAAATTCT CCTGTCTCCA AGATTCTCAA TTGGGTCTTC GAAAATGCGG ATGAGCTGCA ATGGATGTCG
AGTTCTGAGA AAAGGTTGCA GTGAGAATTG CAGCATCAGA CCCTGTTTAC AGTGGATCAA AAGCCCAGAA TCTCAGGCCA
ATGCTACTGT GTTTCTCGCT AAGTTCTACG GCCGTGCTGG GCTCATGAAT CTCGTTAACG CCGGCCCAGA ACATCTTCGT
CCAGCGATCT TTCGTTCGTT GTTGTACGAG GCATGCGGTC GGATAGTGAA CCCGATTTAC GGTTCAGTTG GTTTGTTGTG
GTCGGGGAGC TGGCAGCTGT GTCAGGCCGC CGTGGAGAAC GTCTTGAAAG GCGCACCGAT TACGCCGATC ACGTCTGAAG
CGGCGGCTAG TGGGCGGGGT CCACCCCTCA AGGCATACGA CATACGCCAC GTGTCAAGAG ACGAGAACTC GGCCGCGTCG
AACGAAACTC AGCAGCAACG AGTCAAGACT CGGTGTAGGG TCCGGCGTCC CGTCGCCAAC GCCAAGCCCA AATCCACCAC
AAACGAAAAC AACGGTGACA AGGGAACCGA ATTGGGGTCT TCTGAACCGG GTTTGGTGAC ATGCGAGTGG ACCGAAGAGG
CGGTGAATCG GTCTGGAAGT CACGAATCGT CGCTGAGCCA CCAGTCTGAG GCGGCGAATG CGGTGGAGAG CGAGAGCATG
GTGTCGGTGG AGACGGCGGA GACTTCGATC CTCTTCCGAG ATGAACCGGA TTCAAACCCG AAGATCGTGC AACGAACCGA
TGATGTTGGT TTGGAGCTTA CGCTTGGGTT CGAACCGGTT TCACGTGCGC AGCACGTGGT TCCAGTGAAG AAGAGACGGA
TCGAGTTGAA GGATTTTAGC GGCTCGGCTG AGAGTGGGTC GTGCAAGATG GAGCTGGGGC TTGAATGCTC GGCTTGAGCA
ACTCGACTCT CGGCTCAGTT TTGATTCCAT CGGCTTTATG TATGTCTTTG ATACAAGAGA TCAGAACCCT TTTGTTGTTT
TTTTTTCTTT TAATAGTCTT TTTTTTTTCT TTTGTAATCG GGTTATTTTT AACCCTTTTT TTTGGAATGT GAATGCGGTG
CAGTACAAAC TCAAACATGA ATGACAACTT AAGTAGATTA TGAAAAAGGT GCAAATTTAA AATACCTTAT ATTTCAGAAC
TGAAAAGACA GTAATTTGGT CATAATTAGA TTCAAA

>Vigan.04G006800.01
ATGCGGATGA GCTGCAATGG ATGTCGAGTT CTGAGAAAAG GTTGCAGTGA GAATTGCAGC ATCAGACCCT GTTTACAGTG
GATCAAAAGC CCAGAATCTC AGGCCAATGC TACTGTGTTT CTCGCTAAGT TCTACGGCCG TGCTGGGCTC ATGAATCTCG
TTAACGCCGG CCCAGAACAT CTTCGTCCAG CGATCTTTCG TTCGTTGTTG TACGAGGCAT GCGGTCGGAT AGTGAACCCG
ATTTACGGTT CAGTTGGTTT GTTGTGGTCG GGGAGCTGGC AGCTGTGTCA GGCCGCCGTG GAGAACGTCT TGAAAGGCGC
ACCGATTACG CCGATCACGT CTGAAGCGGC GGCTAGTGGG CGGGGTCCAC CCCTCAAGGC ATACGACATA CGCCACGTGT
CAAGAGACGA GAACTCGGCC GCGTCGAACG AAACTCAGCA GCAACGAGTC AAGACTCGGT GTAGGGTCCG GCGTCCCGTC
GCCAACGCCA AGCCCAAATC CACCACAAAC GAAAACAACG GTGACAAGGG AACCGAATTG GGGTCTTCTG AACCGGGTTT
GGTGACATGC GAGTGGACCG AAGAGGCGGT GAATCGGTCT GGAAGTCACG AATCGTCGCT GAGCCACCAG TCTGAGGCGG
CGAATGCGGT GGAGAGCGAG AGCATGGTGT CGGTGGAGAC GGCGGAGACT TCGATCCTCT TCCGAGATGA ACCGGATTCA
AACCCGAAGA TCGTGCAACG AACCGATGAT GTTGGTTTGG AGCTTACGCT TGGGTTCGAA CCGGTTTCAC GTGCGCAGCA
CGTGGTTCCA GTGAAGAAGA GACGGATCGA GTTGAAGGAT TTTAGCGGCT CGGCTGAGAG TGGGTCGTGC AAGATGGAGC
TGGGGCTTGA ATGCTCGGCT TGA

>Vigan.04G006800.01
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLVNAGPEH LRPAIFRSLL YEACGRIVNP
IYGSVGLLWS GSWQLCQAAV ENVLKGAPIT PITSEAAASG RGPPLKAYDI RHVSRDENSA ASNETQQQRV KTRCRVRRPV
ANAKPKSTTN ENNGDKGTEL GSSEPGLVTC EWTEEAVNRS GSHESSLSHQ SEAANAVESE SMVSVETAET SILFRDEPDS
NPKIVQRTDD VGLELTLGFE PVSRAQHVVP VKKRRIELKD FSGSAESGSC KMELGLECSA *