GBrowse Details

Vigan.04G002400.01

Basic Information:
Name: Vigan.04G002400.01
Multiple alignment
Variant Information
Position: Chr04:153714..156231 (+ strand)
Length: 2518
Functional Information:
Description: Similar to Uncharacterized protein. [Q39860, Glycine max]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.51,4.63,8.91,9.82,12.29,12.84,6.34,10.87
Arabidopsis thaliana homolog: AT2G31680.1
Automatic updates:
Name: NM_001358134 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max small GTP-binding family protein gmr2 (GMR2), mRNA.
PubMed ID: 7948868 NCBI(pubmed)
Status: Known Variant
Name: NM_001358135 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max small GTP-binding family protein gmr1 (GMR1), mRNA.
PubMed ID: 7948868 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:153714..154023 (+ strand)
Length: 310
Type: five_prime_UTR
Position: Chr04:154024..154360 (+ strand)
Length: 337
Type: CDS
Position: Chr04:154941..155263 (+ strand)
Length: 323
Type: CDS
Position: Chr04:155264..156231 (+ strand)
Length: 968
Type: three_prime_UTR

>Vigan.04G002400.01 class=Sequence position=Chr04:153714..156231 (+ strand)
ATTGAATAGA ACAGAGAGAA ACAAACGGAC ATGTTTTAGG TGTCTTAAAA AACTAAAATA ATTTTATTAA AGCAATAAAT
AATAATAATA ATTTGAATTT TATATAAAAA AAGGAAAGGA GTGGGACAAG AAGGGCAATG AATGCAGGAG AGTAGAGTAA
CGGAGCTTGT TGATGCCAGG TTGTGTGGAG TATCATCACA GCGAAGCAGG CAGTCTCAGA AACTAAACCT TTTCTTTTTT
TTCTCTCTCT CTCTCTGAGT TGGAGTTGGA GGAGGGTCGG AGAAGGAGGA CTGGGAAATA GAGTTTGAAA ATGTGGGGTT
CAGATGACGA GGGGGGAGAA GAGTACCTCT TCAAGATCGT CATAATCGGA GACTCAGCGG TCGGAAAATC CAACCTCCTT
TCCCGCTATG CTCGCAACGA GTTCAATATG CACTCCAAGG CCACCATAGG CGTCGAGTTC CAGACTCAGT GCTTGGAGAT
CGACTCCAAG GAAGTCAAGG CTCAGATTTG GGACACCGCC GGCCAAGAGC GATTCCGCGC CGTTACCTCC GCCTACTACC
GCGGCGCTGT CGGCGCTCTC ATTGTCTACG ACATCTCCCG CCGAACCACC TTCGACAGCG TGGGGCGCTG GCTCGACGAG
CTTAAAAGTA CTTTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
CTCTCTCTCT CTCTCTCTCC CTTCTATTGC CAGATCTGAT CTTCTTCCCC TTCGCCGATC CGATTCTCTT CTTGTGCACT
CCTACGCTAT TTTATTTATA CGTGTCTTCT GCTGTCTACT TTTCTCTGTA ATCACCTTTT TCACAGGCTA ACCTAGAACC
ACCTTTCAAT TTATCGATTC TCTCGTGCCT GCTGGTTGCA ACTTCTCTTG TAGTTTCGTC TCACTCTCTC TACTTCTTCA
TAAAGATTCA AAGAGATCGA TCATAAAAGT AAAAAGTCCT AATTAGAGAA TAGATGTGGC ATCTTCGCAA GTACAGCTAT
TTAGTTAGAT AAATACAAAC ATTCATAGAG AGAGAATAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGC
AAATGAGTAA TTTAGTTTGG TGTAAAAAAA TAAGTTGTGG TTTGTAAGGA AAGGCCATTC ATGGATGCTA ACGAAGCTGT
GTTATTGTAT GGTGTGATCT GATGCAGCTC ATTGCGATAC GACGGTGGCC ATGATGCTGG TGGGAAACAA ATGTGATTTG
GAGAATATAA GGGCGGTGAG CGTTGAGGAA GGGAAAAGCC TTGCGGAAGC GGAAGGATTG TTTTTCATGG AAACGTCTGC
GTTGGACTCT ACCAACGTGA AGACGGCATT CGAGATGGTT ATTCGAGAGA TATACAACAA CGTCAGCAGG AAGGTCCTCA
ACTCCGATAC ATACAAGGCA GAGTTGTCGG TGAACAGGGT CAGCCTCGTC AACAATGGCC CTGCTGCATC CAAGCAAAAT
CAGACCTATT TTTCTTGCTG TTCCAGATGA TCTGCAATGC ACCACATACA ACTCAGCTTT GTCACTTCAC CTCAATTTCT
TTTTGTTGCT TTATTAATTA AATGGGTTGG TTGGATTGGG TTGCATTTTT CCTTGGTCGC TAGCTATGAT TTCAAAGCTT
GTTCATCTGT TACAACTATA AGACAGTCAG ACAGACAGAA ATATAGTAGC CAAAATGTTG TCTTCAATTT TAAGAAAACC
AAAACGGGTA TAATTGTATA ATCGGGGGTA AAAGTAAAAG AGCTTGTAAT TTGATTTGCA GCAAATGAAA GCGGACATCC
ATTTATTTGT CGTCTGCGTG ATTATTGGTA ATGGTTTCCT TCTCCCTTTT CTTTTGTCTT TTTGAGTCCT CGTGTTATCT
GCCTAACGAT TCTTGCTCCC GGGGAATCGT TCACCTGTTT CCTTATGCAT TTGGGTCACA GGTTGTTCTT CCCGCCGGTT
AGCTGAGCTG AACTGGGAGT CGTTAGTTTT CGTTTAAATC GGTATGATTT ACGACTGCTT TGTCTTTCTT ATTTGACTGG
TGTTTAGCAC TTGGGTTAGT TTAGAACACC AGAGCTTCCC TTTTCAGCTG ATTTGTCTGG TGAATGGCAA ATTGGCAATA
AAAGCAAGCA ACTTGTAAAG GTAATCTTAA ATTCATACCA TTCTGCGTAG ACATGTTTTG TCTCTTAAGT TAAATGAATC
ACGCATGTAT TGGGAGGTTG GATTTAGTCA AGTGATGTAC CTGGAAGTTT GTTTCCTTCA GTTCATCAGT TTCTTCTGAA
TTGACGAATA TAATCTATGA CTAGTGATTT ATATGCCCAT AAAAAGAGAA TGCATCTATA TGGACTCAAC CACACGTTTA
AAGCTTATGC CTGCAGCTTA ATTCGTTATA CTTTGATGTA AAAAAGATGG TTCATCCATC TCTTGACTTG ACATATTGAA
AATTATATCA ACTAGTAATG TTTGTATTTT CGATTCAA

>Vigan.04G002400.01
ATTGAATAGA ACAGAGAGAA ACAAACGGAC ATGTTTTAGG TGTCTTAAAA AACTAAAATA ATTTTATTAA AGCAATAAAT
AATAATAATA ATTTGAATTT TATATAAAAA AAGGAAAGGA GTGGGACAAG AAGGGCAATG AATGCAGGAG AGTAGAGTAA
CGGAGCTTGT TGATGCCAGG TTGTGTGGAG TATCATCACA GCGAAGCAGG CAGTCTCAGA AACTAAACCT TTTCTTTTTT
TTCTCTCTCT CTCTCTGAGT TGGAGTTGGA GGAGGGTCGG AGAAGGAGGA CTGGGAAATA GAGTTTGAAA ATGTGGGGTT
CAGATGACGA GGGGGGAGAA GAGTACCTCT TCAAGATCGT CATAATCGGA GACTCAGCGG TCGGAAAATC CAACCTCCTT
TCCCGCTATG CTCGCAACGA GTTCAATATG CACTCCAAGG CCACCATAGG CGTCGAGTTC CAGACTCAGT GCTTGGAGAT
CGACTCCAAG GAAGTCAAGG CTCAGATTTG GGACACCGCC GGCCAAGAGC GATTCCGCGC CGTTACCTCC GCCTACTACC
GCGGCGCTGT CGGCGCTCTC ATTGTCTACG ACATCTCCCG CCGAACCACC TTCGACAGCG TGGGGCGCTG GCTCGACGAG
CTTAAAACTC ATTGCGATAC GACGGTGGCC ATGATGCTGG TGGGAAACAA ATGTGATTTG GAGAATATAA GGGCGGTGAG
CGTTGAGGAA GGGAAAAGCC TTGCGGAAGC GGAAGGATTG TTTTTCATGG AAACGTCTGC GTTGGACTCT ACCAACGTGA
AGACGGCATT CGAGATGGTT ATTCGAGAGA TATACAACAA CGTCAGCAGG AAGGTCCTCA ACTCCGATAC ATACAAGGCA
GAGTTGTCGG TGAACAGGGT CAGCCTCGTC AACAATGGCC CTGCTGCATC CAAGCAAAAT CAGACCTATT TTTCTTGCTG
TTCCAGATGA TCTGCAATGC ACCACATACA ACTCAGCTTT GTCACTTCAC CTCAATTTCT TTTTGTTGCT TTATTAATTA
AATGGGTTGG TTGGATTGGG TTGCATTTTT CCTTGGTCGC TAGCTATGAT TTCAAAGCTT GTTCATCTGT TACAACTATA
AGACAGTCAG ACAGACAGAA ATATAGTAGC CAAAATGTTG TCTTCAATTT TAAGAAAACC AAAACGGGTA TAATTGTATA
ATCGGGGGTA AAAGTAAAAG AGCTTGTAAT TTGATTTGCA GCAAATGAAA GCGGACATCC ATTTATTTGT CGTCTGCGTG
ATTATTGGTA ATGGTTTCCT TCTCCCTTTT CTTTTGTCTT TTTGAGTCCT CGTGTTATCT GCCTAACGAT TCTTGCTCCC
GGGGAATCGT TCACCTGTTT CCTTATGCAT TTGGGTCACA GGTTGTTCTT CCCGCCGGTT AGCTGAGCTG AACTGGGAGT
CGTTAGTTTT CGTTTAAATC GGTATGATTT ACGACTGCTT TGTCTTTCTT ATTTGACTGG TGTTTAGCAC TTGGGTTAGT
TTAGAACACC AGAGCTTCCC TTTTCAGCTG ATTTGTCTGG TGAATGGCAA ATTGGCAATA AAAGCAAGCA ACTTGTAAAG
GTAATCTTAA ATTCATACCA TTCTGCGTAG ACATGTTTTG TCTCTTAAGT TAAATGAATC ACGCATGTAT TGGGAGGTTG
GATTTAGTCA AGTGATGTAC CTGGAAGTTT GTTTCCTTCA GTTCATCAGT TTCTTCTGAA TTGACGAATA TAATCTATGA
CTAGTGATTT ATATGCCCAT AAAAAGAGAA TGCATCTATA TGGACTCAAC CACACGTTTA AAGCTTATGC CTGCAGCTTA
ATTCGTTATA CTTTGATGTA AAAAAGATGG TTCATCCATC TCTTGACTTG ACATATTGAA AATTATATCA ACTAGTAATG
TTTGTATTTT CGATTCAA

>Vigan.04G002400.01
ATGTGGGGTT CAGATGACGA GGGGGGAGAA GAGTACCTCT TCAAGATCGT CATAATCGGA GACTCAGCGG TCGGAAAATC
CAACCTCCTT TCCCGCTATG CTCGCAACGA GTTCAATATG CACTCCAAGG CCACCATAGG CGTCGAGTTC CAGACTCAGT
GCTTGGAGAT CGACTCCAAG GAAGTCAAGG CTCAGATTTG GGACACCGCC GGCCAAGAGC GATTCCGCGC CGTTACCTCC
GCCTACTACC GCGGCGCTGT CGGCGCTCTC ATTGTCTACG ACATCTCCCG CCGAACCACC TTCGACAGCG TGGGGCGCTG
GCTCGACGAG CTTAAAACTC ATTGCGATAC GACGGTGGCC ATGATGCTGG TGGGAAACAA ATGTGATTTG GAGAATATAA
GGGCGGTGAG CGTTGAGGAA GGGAAAAGCC TTGCGGAAGC GGAAGGATTG TTTTTCATGG AAACGTCTGC GTTGGACTCT
ACCAACGTGA AGACGGCATT CGAGATGGTT ATTCGAGAGA TATACAACAA CGTCAGCAGG AAGGTCCTCA ACTCCGATAC
ATACAAGGCA GAGTTGTCGG TGAACAGGGT CAGCCTCGTC AACAATGGCC CTGCTGCATC CAAGCAAAAT CAGACCTATT
TTTCTTGCTG TTCCAGATGA 

>Vigan.04G002400.01
MWGSDDEGGE EYLFKIVIIG DSAVGKSNLL SRYARNEFNM HSKATIGVEF QTQCLEIDSK EVKAQIWDTA GQERFRAVTS
AYYRGAVGAL IVYDISRRTT FDSVGRWLDE LKTHCDTTVA MMLVGNKCDL ENIRAVSVEE GKSLAEAEGL FFMETSALDS
TNVKTAFEMV IREIYNNVSR KVLNSDTYKA ELSVNRVSLV NNGPAASKQN QTYFSCCSR*