GBrowse Details

Vigan.03G294400.01

Basic Information:
Name: Vigan.03G294400.01
Multiple alignment
Variant Information
Position: Chr03:43123752..43127130 (- strand)
Length: 3379
Functional Information:
Description: Similar to Expansin. [Q8GZD3, Glycine max]
GO: Biological Process: plant-type cell wall organization (GO:0009664)
Cellular Component: extracellular region (GO:0005576)
InterPro: Expansin (IPR002963)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.53,27.40,10.41,10.84,0.25,3.40,10.95,4.12
Arabidopsis thaliana homolog: AT1G20190.1
Automatic updates:
Name: LN681352 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mRNA for expansin (EXP1 gene), cultivar BacKan.
PubMed ID: -
Status: Known Variant
Name: LN681353 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mRNA for expansin (EXP1 gene), cultivar VinhPhuc.
PubMed ID: -
Status: Known Variant
Name: NM_001250921 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max expansin 1 (EXP1), mRNA.
PubMed ID: 12644651 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:43123752..43124228 (- strand)
Length: 477
Type: three_prime_UTR
Position: Chr03:43124229..43124535 (- strand)
Length: 307
Type: CDS
Position: Chr03:43124954..43125275 (- strand)
Length: 322
Type: CDS
Position: Chr03:43125380..43125614 (- strand)
Length: 235
Type: CDS
Position: Chr03:43125615..43127130 (- strand)
Length: 1516
Type: five_prime_UTR

>Vigan.03G294400.01 class=Sequence position=Chr03:43123752..43127130 (- strand)
ATTTGACTAT ATTATAAACA AGAGAAATTA TATACTTATG CTTTGTTTAA CTGAATTTGA CACAGAAACA AACCATTGTT
ATATACTACT TTTAATTTGA TTTTATTGAA AAGAAGGAAT AGTCTATGTC TGCTGAAAGT ATCATGGACA ATAAAGAAAA
TTTACAGCTG ACATGAGGAA ACTTTTTGGC AGCTTGGATG GGTCATCTTT GTTGATGGGA GGGGCCCAAT TAGACAAAAA
CTAAATCTTA GATTTCAACT TTGTTGACCT AGAACCACAG AAACATTATC CTTTTGAATA AGCTGTAATC AACAATTAAC
AGCCTATCAT GAAAAAATGC AATGAACTTT TGAATGAAGA CGGATGTCTG TGATAACATC CCAATGTGGA ATTTATATTT
GTTTTACAGT AATACATTCA TTGCAACATT TCATATGCTT AAGCTTATAT CATTTTGGCT TCTTGCAGTA TGCATTTCAC
TTTTCATCAG TTAATGAATT TTCAGGCTGT TTAAGAATGT TGCAGAGAAG TTTGGTACAA CTTTCAATGG AGATGGAACT
CATAATTTGA TTGTTCGGCT GCCATAATGT CATCAGGACT GGTTTACACA ACATCAGCAT ATCATATTCG CTAGCTGATG
TAGCTAAAAA GTTGAGGTTG AACTCTGCTA ATCCTGTTGC TGATGCTGAG AGCATTGTAT TGTAGCAAAG ACCATCCGTG
ATAACTGAGG TGATTCTGAG ATAAATTACA CCCTGCCTTC TTTTGTTGTT TGAGTCTGAT GTAGAATTGA AAAAGCCCAT
ATCACTTGAT TTATTTATTT TTCTTGGAGC TTATCAAAAG ATAATTGTAT TGGTGACAAG GGAAGAAATA TAATAATGTA
AAAAACTTTC CTTTGGCTGG GTTTCTAGGC ATTCGGCAAT TTCAGATTGC TTGACGGTGC TATTATGGCG TAGCATGGCC
CGTGTGATCA AACTTATAAT TATGAACACT CCACTTAAAA AATGAGAAAA ATTCAGTGTC CAATGTACAA CTGTATAACA
GACTACTGAC AATCTGTATA GGCAAAATGG GACATGTGGA CGTAGCTCAC AAAAGACGAC ACTGTCATCA TTTCCATGTG
AGCCTGTAAA TTATGATCTG CACCGTTTGT TCCATTTGAT AAAACCATTC TGTCTTTTTA TCCACAAATT GAGTTACAAA
CCATGAGATC CATGTGAGAC GAAAGAAGTA GACATTGGGA TCTGTGAGGA GCTAAAGTTA AATAATTAGG GTTTTGAAAC
ATTCACGGCT CTTATGTGGA CATGTGCGTG TGAGTAGGTT AGAAGGGATG TATAAGAGGA ATACTGAAAG AGAACGTGGG
AATGATTGAA TGGTGTTCAG ACTTGCACAC ATAGATTTAA TCTGATAAAT TATAAAAATT GTTTCTTGAG TTCTCTTATC
TTGCAGAACC TCACATGTGG CATAGTTGCG TAAGCTATTC TATACCCTTA TTTAAACACA GTTTTTGTAC TTGGAAATGG
CAATAATTGC AAATACAATT TCTACTCTCA TATCCTTCAA CCTCATCATC TCACTTGGGA TCTTGGGCAT TCAACAAGCT
AGAAAAAAAA AAATGGGCCG AGTTATGTTT CTTTTGGGTA GCCTCATTGG ATTATGCAGC TTCACAATCA CTACCTTTGC
CTTCTCACCT TCTGGATGGA CCAATGCCCA TGCCACTTTT TATGGGGGTA GTGATGCTTC AGGCACTATG GGTAAGCAAC
TGTAACCAAA CATTTTAATA TTAGATTCTG TTTTGTACCC TACTCTTCAA ACTATAACAT TCAAAATTTC ACACATAAAT
TGTGTATAAC TGCAGGGGGA GCTTGTGGAT ATGGGAATCT GTATGCAACT GGTTATGGAA CTAGAACTGC AGCTTTAAGC
ACTGCCTTAT TCAATGACGG AGCTTCCTGT GGCCAGTGCT ACAAAATCAT ATGTGATTAC AAAGCAGATT CCAGATGGTG
CATCAAAGGA AGATCTGTCA CCATAACCGC CACAAATTTT TGCCCTCCCA ATTTTGCTCT TCCTAACAAT AATGGAGGCT
GGTGCAACCC ACCCCTCAAG CATTTTGACA TGGCCCAACC TGCATGGGAA AAGATTGGTA TTTACAGAGG AGGAATTGTG
CCCGTCTTAT TCCAAAGGTT AGAATCTGTT CCATACCTTG GTGTTATACA AGAACATTAA TATAACTTAT TATGGACACC
CAAGTGGTGA AAAGTAATCC TTATCTTCAA AATCAGATTT TTAAAGTTGT ATTAATCAAA CATAATAAAT TTTTAACATA
ACATCATAGT TTATCTAGCT TATTAGGCCA TTTGTTATTA TTTGATTATT CATAAATATT TAATCTCTCT ATCTTCACAG
TGGAGACGTC TGATACGCTA TTAAAAAAAC ATGATCATAT TAAAGTATAT AACTTCTCGA CTTACAATTC AATTTTCTGG
GCTCGAAGAA TTTGGTCTAA TTTCATTGTG GTCACTGCAA AACAAAAATA ACTACATTAA TTTTTGTCAA AAACGTCTTT
TGAATTACTT TGTGACATTG ATATGATTGG TGCAGGGTTC CATGCAAAAA GCACGGAGGG GTTAGGTTCA GTGTGAATGG
GAGGGACTAC TTTGAGCTTG TGTTGGTCAG CAATGTGGGT GGGGCTGGAT CCATCCAATC TGTGTCCATT AAAGGATCGA
AAACTGATTG GATGGCTATG TCAAGAAACT GGGGTTCTAA TTGGCAATCC AACGCATATT TGAATGGTCA ATCTTTGTCC
TTCAGGGTCA CAACCACTGA TGGAGAAACC AGAGTTTTCC AAAATATAGT TCCAGCAAGT TGGAGTTTTG GCCAAACTTT
CTCCAGCCCA GTTCAGTTCT AAGCTCAGGA AAAACTCAAC GGCTGAGGCG TGCTTTTTAT TTTAATGGAG CAGCCCGCCA
CTCCTCTCAT CTGGTTTTGA TTATTTGGTG GACTCAACCC ATCAACTCCA ACCCCATAAT GAAGGCACAA TATATACATG
CCTTAATAAA TTGTATCAAT AGGAAGCTAA AGCTTGTAGA AATCAAATAA GCATCTTTCA GGTTTAAATT TATACCATAA
ATAAATTGTT CTAATATGAA TACTATAGTT CAAGTGGAGT TTGGGAAAAT ATCAGTTCCC TCAAATTTTC CATGTTATAT
TGTCACTGTT GTGTGTTTAT TTCATCAACC TTTTTCAAAC CACTAAAAAT ATTGCAAGTA GGGCTTCTGA TATTTGTTTT
TGTTTTTTTT CAGTAGATTA ATTTTAGTTG ATTAGGATTG AAGTATTCTC AGATTAAGTT TTTAATTTCA ACGCAACCTG
ATTATAAAAC GTGAGCAGG

>Vigan.03G294400.01
ATTTGACTAT ATTATAAACA AGAGAAATTA TATACTTATG CTTTGTTTAA CTGAATTTGA CACAGAAACA AACCATTGTT
ATATACTACT TTTAATTTGA TTTTATTGAA AAGAAGGAAT AGTCTATGTC TGCTGAAAGT ATCATGGACA ATAAAGAAAA
TTTACAGCTG ACATGAGGAA ACTTTTTGGC AGCTTGGATG GGTCATCTTT GTTGATGGGA GGGGCCCAAT TAGACAAAAA
CTAAATCTTA GATTTCAACT TTGTTGACCT AGAACCACAG AAACATTATC CTTTTGAATA AGCTGTAATC AACAATTAAC
AGCCTATCAT GAAAAAATGC AATGAACTTT TGAATGAAGA CGGATGTCTG TGATAACATC CCAATGTGGA ATTTATATTT
GTTTTACAGT AATACATTCA TTGCAACATT TCATATGCTT AAGCTTATAT CATTTTGGCT TCTTGCAGTA TGCATTTCAC
TTTTCATCAG TTAATGAATT TTCAGGCTGT TTAAGAATGT TGCAGAGAAG TTTGGTACAA CTTTCAATGG AGATGGAACT
CATAATTTGA TTGTTCGGCT GCCATAATGT CATCAGGACT GGTTTACACA ACATCAGCAT ATCATATTCG CTAGCTGATG
TAGCTAAAAA GTTGAGGTTG AACTCTGCTA ATCCTGTTGC TGATGCTGAG AGCATTGTAT TGTAGCAAAG ACCATCCGTG
ATAACTGAGG TGATTCTGAG ATAAATTACA CCCTGCCTTC TTTTGTTGTT TGAGTCTGAT GTAGAATTGA AAAAGCCCAT
ATCACTTGAT TTATTTATTT TTCTTGGAGC TTATCAAAAG ATAATTGTAT TGGTGACAAG GGAAGAAATA TAATAATGTA
AAAAACTTTC CTTTGGCTGG GTTTCTAGGC ATTCGGCAAT TTCAGATTGC TTGACGGTGC TATTATGGCG TAGCATGGCC
CGTGTGATCA AACTTATAAT TATGAACACT CCACTTAAAA AATGAGAAAA ATTCAGTGTC CAATGTACAA CTGTATAACA
GACTACTGAC AATCTGTATA GGCAAAATGG GACATGTGGA CGTAGCTCAC AAAAGACGAC ACTGTCATCA TTTCCATGTG
AGCCTGTAAA TTATGATCTG CACCGTTTGT TCCATTTGAT AAAACCATTC TGTCTTTTTA TCCACAAATT GAGTTACAAA
CCATGAGATC CATGTGAGAC GAAAGAAGTA GACATTGGGA TCTGTGAGGA GCTAAAGTTA AATAATTAGG GTTTTGAAAC
ATTCACGGCT CTTATGTGGA CATGTGCGTG TGAGTAGGTT AGAAGGGATG TATAAGAGGA ATACTGAAAG AGAACGTGGG
AATGATTGAA TGGTGTTCAG ACTTGCACAC ATAGATTTAA TCTGATAAAT TATAAAAATT GTTTCTTGAG TTCTCTTATC
TTGCAGAACC TCACATGTGG CATAGTTGCG TAAGCTATTC TATACCCTTA TTTAAACACA GTTTTTGTAC TTGGAAATGG
CAATAATTGC AAATACAATT TCTACTCTCA TATCCTTCAA CCTCATCATC TCACTTGGGA TCTTGGGCAT TCAACAAGCT
AGAAAAAAAA AAATGGGCCG AGTTATGTTT CTTTTGGGTA GCCTCATTGG ATTATGCAGC TTCACAATCA CTACCTTTGC
CTTCTCACCT TCTGGATGGA CCAATGCCCA TGCCACTTTT TATGGGGGTA GTGATGCTTC AGGCACTATG GGGGGAGCTT
GTGGATATGG GAATCTGTAT GCAACTGGTT ATGGAACTAG AACTGCAGCT TTAAGCACTG CCTTATTCAA TGACGGAGCT
TCCTGTGGCC AGTGCTACAA AATCATATGT GATTACAAAG CAGATTCCAG ATGGTGCATC AAAGGAAGAT CTGTCACCAT
AACCGCCACA AATTTTTGCC CTCCCAATTT TGCTCTTCCT AACAATAATG GAGGCTGGTG CAACCCACCC CTCAAGCATT
TTGACATGGC CCAACCTGCA TGGGAAAAGA TTGGTATTTA CAGAGGAGGA ATTGTGCCCG TCTTATTCCA AAGGGTTCCA
TGCAAAAAGC ACGGAGGGGT TAGGTTCAGT GTGAATGGGA GGGACTACTT TGAGCTTGTG TTGGTCAGCA ATGTGGGTGG
GGCTGGATCC ATCCAATCTG TGTCCATTAA AGGATCGAAA ACTGATTGGA TGGCTATGTC AAGAAACTGG GGTTCTAATT
GGCAATCCAA CGCATATTTG AATGGTCAAT CTTTGTCCTT CAGGGTCACA ACCACTGATG GAGAAACCAG AGTTTTCCAA
AATATAGTTC CAGCAAGTTG GAGTTTTGGC CAAACTTTCT CCAGCCCAGT TCAGTTCTAA GCTCAGGAAA AACTCAACGG
CTGAGGCGTG CTTTTTATTT TAATGGAGCA GCCCGCCACT CCTCTCATCT GGTTTTGATT ATTTGGTGGA CTCAACCCAT
CAACTCCAAC CCCATAATGA AGGCACAATA TATACATGCC TTAATAAATT GTATCAATAG GAAGCTAAAG CTTGTAGAAA
TCAAATAAGC ATCTTTCAGG TTTAAATTTA TACCATAAAT AAATTGTTCT AATATGAATA CTATAGTTCA AGTGGAGTTT
GGGAAAATAT CAGTTCCCTC AAATTTTCCA TGTTATATTG TCACTGTTGT GTGTTTATTT CATCAACCTT TTTCAAACCA
CTAAAAATAT TGCAAGTAGG GCTTCTGATA TTTGTTTTTG TTTTTTTTCA GTAGATTAAT TTTAGTTGAT TAGGATTGAA
GTATTCTCAG ATTAAGTTTT TAATTTCAAC GCAACCTGAT TATAAAACGT GAGCAGG

>Vigan.03G294400.01
ATGGCAATAA TTGCAAATAC AATTTCTACT CTCATATCCT TCAACCTCAT CATCTCACTT GGGATCTTGG GCATTCAACA
AGCTAGAAAA AAAAAAATGG GCCGAGTTAT GTTTCTTTTG GGTAGCCTCA TTGGATTATG CAGCTTCACA ATCACTACCT
TTGCCTTCTC ACCTTCTGGA TGGACCAATG CCCATGCCAC TTTTTATGGG GGTAGTGATG CTTCAGGCAC TATGGGGGGA
GCTTGTGGAT ATGGGAATCT GTATGCAACT GGTTATGGAA CTAGAACTGC AGCTTTAAGC ACTGCCTTAT TCAATGACGG
AGCTTCCTGT GGCCAGTGCT ACAAAATCAT ATGTGATTAC AAAGCAGATT CCAGATGGTG CATCAAAGGA AGATCTGTCA
CCATAACCGC CACAAATTTT TGCCCTCCCA ATTTTGCTCT TCCTAACAAT AATGGAGGCT GGTGCAACCC ACCCCTCAAG
CATTTTGACA TGGCCCAACC TGCATGGGAA AAGATTGGTA TTTACAGAGG AGGAATTGTG CCCGTCTTAT TCCAAAGGGT
TCCATGCAAA AAGCACGGAG GGGTTAGGTT CAGTGTGAAT GGGAGGGACT ACTTTGAGCT TGTGTTGGTC AGCAATGTGG
GTGGGGCTGG ATCCATCCAA TCTGTGTCCA TTAAAGGATC GAAAACTGAT TGGATGGCTA TGTCAAGAAA CTGGGGTTCT
AATTGGCAAT CCAACGCATA TTTGAATGGT CAATCTTTGT CCTTCAGGGT CACAACCACT GATGGAGAAA CCAGAGTTTT
CCAAAATATA GTTCCAGCAA GTTGGAGTTT TGGCCAAACT TTCTCCAGCC CAGTTCAGTT CTAA

>Vigan.03G294400.01
MAIIANTIST LISFNLIISL GILGIQQARK KKMGRVMFLL GSLIGLCSFT ITTFAFSPSG WTNAHATFYG GSDASGTMGG
ACGYGNLYAT GYGTRTAALS TALFNDGASC GQCYKIICDY KADSRWCIKG RSVTITATNF CPPNFALPNN NGGWCNPPLK
HFDMAQPAWE KIGIYRGGIV PVLFQRVPCK KHGGVRFSVN GRDYFELVLV SNVGGAGSIQ SVSIKGSKTD WMAMSRNWGS
NWQSNAYLNG QSLSFRVTTT DGETRVFQNI VPASWSFGQT FSSPVQF*