VIGGS:GBrowse

Vigan.03G284200.01

Basic Information:

Name:	Vigan.03G284200.01 Multiple alignment Variant Information
Position:	Chr03:42259383..42261148 (+ strand)
Length:	1766

Functional Information:

Description:	Similar to 50S ribosomal protein L31. [V7CTY7, Phaseolus vulgaris]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein L31 (IPR002150)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:23.66,9.87,25.36,129.72,10.54,66.22,6.44,28.34
Arabidopsis thaliana homolog:	AT1G75350.1

Automatic updates:

Name:	NM_001251685 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499959 (LOC100499959), mRNA; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:42259383..42259406 (+ strand)
Length:	24
Type:	five_prime_UTR

Position:	Chr03:42259407..42259478 (+ strand)
Length:	72
Type:	CDS

Position:	Chr03:42259562..42259888 (+ strand)
Length:	327
Type:	CDS

Position:	Chr03:42259889..42261148 (+ strand)
Length:	1260
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.03G284200.01 class=Sequence position=Chr03:42259383..42261148 (+ strand)
TCACAAACCG ATAGGTACCT GAAAATGGCG CAGAGTGTGA CCAACACATT CATCCAAGGA ACACGCTTTC TTCCACTTCC
ACCTCCCAAG AGAAACGTAA TCAATTTCAA ACCCAGAGCA CCAAGTTTGA GTGTGGAATC ATGAATTTTG ACGGAGTTTT
TGTTTGAATT TGTTGGCAGG TAGGGAGAGT GGTGCAGTGT GGGGTTCGGT GCAGGAAGAA GGATATACAC CCGGAGTTCC
ATGGGGAAGC CAAGGTGTAC TGTAACGGAG AGCTGGTGAT GACGACGGGT GGGACCCAGA AGGAGTATGT GGTGGACGTG
TGGTCGGGGA ACCACCCCTT CTACCTCGGC AACCGCTCGG CGGTTATGGT GAGCGACGAC CAGGTGGAGA AGTTCAGGAA
GAAGTTCGGG GAGCTCACGC AGATTATGGA GATTCCTGTC CTCAAAGGAG AGATTGTTAT CCCCTCTAGA CGCAAGGGGG
TTTCCAAGGG AGGCAAAAAG AAGTGATCTT CTCTTCTTGG TAACTTTTTT TTTTTGTCAA TTTCAATTGG TGTAATATGA
TCAAACACTT CTCTCAACTG TTTGAAAAAA TGCTGCTATG GATATTGTTT TCAGCAAACG GGTGAATGTG GATATGTTTG
TCACTGGTAA AAAAATGCAT TGGGATTCAT TGTGTTGATT TTGCTCTGAC AGATAAAACA ACTCGGGTGT TACATTTTTT
TTCGTTTGGA TTAGTTTATT TTGTACTCCA ATTTATAAAT GAGCTTGTTA ATTTTTATTT CTTAGAAGAA AAATAATGTC
CTAAAGATAT GATTATGAGA CTTGAATGAT AAGGATAATG GTGTTGGAGA TCTCGGTTCA GTAATGTAGT TAAAATAGTA
CATATTAGTG GAAGAGAATT CGTCTCATGA ACTAGCTTCA TGAGTTGAAT TAAGTACGAA TTGGAAATTT TAAATGATCT
CAGAATCTGT GTAATGTTCT AACAGAGTCA CCCATTGTCT TACCATTGTC AAACCAATGC ATATGTACAC AAACTTATGT
TCATGACGAG TGTTAGAAAT CTTAAATTGA CTTGTAGTAT GATGTAAGAA AAGGATATCC TTCACTTCAT GGCCTAGCTT
TGGAAGTCGT GATAAGCTCA AATCCAAATT CTAGAGTTTC TTGATGTTGT TGTTGGTGAA GAGCTACAGA AGTACAACCG
AGATAGCATT TGTAAATTTG GATAACAACT TTCAAGGATT GATATGGTGG AGATATCCTT CACTTCATGA ACTTTCAAGG
ATAACAACTT TGGATAACAA CTTTCAAGGA TATCCTTCAC TTCATGAACT TTGAATGTCG CAGTTACCAT GGTCATCTGC
TAATCAAATT TTCACAACAT TGATAATGAT TTACTTGTTA ATTAAAGTTT TGAACTTGCA TGACGATTTT TTTAATAAAC
CAAAGATTAT TGAAACATGA AATAGAATTA CAAGGTATAC TCTATTGATG TTATTGAAAC ATGCATATCG AATGAATATT
ACTTTGATGC TATGTCCTGT TTTAGATTTT TGCGTGCATA TTGATGTTAT TGCCAGCCAA AATCTGAAAA CACTTTATCG
TGCACCCAAG GCCTTCCTTA CAAGAATTGT TGCAGCAAAC TTATATGAAA ACCAGGAAAT GACTGCAACA GACTTATATG
AGATAACTTT GCAGATACTG CTAAGCTTTA TTATCATTGG CAGATCTTTC ACTCTGTGTG AATGTGAGTA TTTGAAAGCT
GAGAGA

[show][hide][copy]TRANSCRIPT

>Vigan.03G284200.01
TCACAAACCG ATAGGTACCT GAAAATGGCG CAGAGTGTGA CCAACACATT CATCCAAGGA ACACGCTTTC TTCCACTTCC
ACCTCCCAAG AGAAACGTAG GGAGAGTGGT GCAGTGTGGG GTTCGGTGCA GGAAGAAGGA TATACACCCG GAGTTCCATG
GGGAAGCCAA GGTGTACTGT AACGGAGAGC TGGTGATGAC GACGGGTGGG ACCCAGAAGG AGTATGTGGT GGACGTGTGG
TCGGGGAACC ACCCCTTCTA CCTCGGCAAC CGCTCGGCGG TTATGGTGAG CGACGACCAG GTGGAGAAGT TCAGGAAGAA
GTTCGGGGAG CTCACGCAGA TTATGGAGAT TCCTGTCCTC AAAGGAGAGA TTGTTATCCC CTCTAGACGC AAGGGGGTTT
CCAAGGGAGG CAAAAAGAAG TGATCTTCTC TTCTTGGTAA CTTTTTTTTT TTGTCAATTT CAATTGGTGT AATATGATCA
AACACTTCTC TCAACTGTTT GAAAAAATGC TGCTATGGAT ATTGTTTTCA GCAAACGGGT GAATGTGGAT ATGTTTGTCA
CTGGTAAAAA AATGCATTGG GATTCATTGT GTTGATTTTG CTCTGACAGA TAAAACAACT CGGGTGTTAC ATTTTTTTTC
GTTTGGATTA GTTTATTTTG TACTCCAATT TATAAATGAG CTTGTTAATT TTTATTTCTT AGAAGAAAAA TAATGTCCTA
AAGATATGAT TATGAGACTT GAATGATAAG GATAATGGTG TTGGAGATCT CGGTTCAGTA ATGTAGTTAA AATAGTACAT
ATTAGTGGAA GAGAATTCGT CTCATGAACT AGCTTCATGA GTTGAATTAA GTACGAATTG GAAATTTTAA ATGATCTCAG
AATCTGTGTA ATGTTCTAAC AGAGTCACCC ATTGTCTTAC CATTGTCAAA CCAATGCATA TGTACACAAA CTTATGTTCA
TGACGAGTGT TAGAAATCTT AAATTGACTT GTAGTATGAT GTAAGAAAAG GATATCCTTC ACTTCATGGC CTAGCTTTGG
AAGTCGTGAT AAGCTCAAAT CCAAATTCTA GAGTTTCTTG ATGTTGTTGT TGGTGAAGAG CTACAGAAGT ACAACCGAGA
TAGCATTTGT AAATTTGGAT AACAACTTTC AAGGATTGAT ATGGTGGAGA TATCCTTCAC TTCATGAACT TTCAAGGATA
ACAACTTTGG ATAACAACTT TCAAGGATAT CCTTCACTTC ATGAACTTTG AATGTCGCAG TTACCATGGT CATCTGCTAA
TCAAATTTTC ACAACATTGA TAATGATTTA CTTGTTAATT AAAGTTTTGA ACTTGCATGA CGATTTTTTT AATAAACCAA
AGATTATTGA AACATGAAAT AGAATTACAA GGTATACTCT ATTGATGTTA TTGAAACATG CATATCGAAT GAATATTACT
TTGATGCTAT GTCCTGTTTT AGATTTTTGC GTGCATATTG ATGTTATTGC CAGCCAAAAT CTGAAAACAC TTTATCGTGC
ACCCAAGGCC TTCCTTACAA GAATTGTTGC AGCAAACTTA TATGAAAACC AGGAAATGAC TGCAACAGAC TTATATGAGA
TAACTTTGCA GATACTGCTA AGCTTTATTA TCATTGGCAG ATCTTTCACT CTGTGTGAAT GTGAGTATTT GAAAGCTGAG
AGA

[show][hide][copy]CDS

>Vigan.03G284200.01
ATGGCGCAGA GTGTGACCAA CACATTCATC CAAGGAACAC GCTTTCTTCC ACTTCCACCT CCCAAGAGAA ACGTAGGGAG
AGTGGTGCAG TGTGGGGTTC GGTGCAGGAA GAAGGATATA CACCCGGAGT TCCATGGGGA AGCCAAGGTG TACTGTAACG
GAGAGCTGGT GATGACGACG GGTGGGACCC AGAAGGAGTA TGTGGTGGAC GTGTGGTCGG GGAACCACCC CTTCTACCTC
GGCAACCGCT CGGCGGTTAT GGTGAGCGAC GACCAGGTGG AGAAGTTCAG GAAGAAGTTC GGGGAGCTCA CGCAGATTAT
GGAGATTCCT GTCCTCAAAG GAGAGATTGT TATCCCCTCT AGACGCAAGG GGGTTTCCAA GGGAGGCAAA AAGAAGTGA

[show][hide][copy]PROTEIN

>Vigan.03G284200.01
MAQSVTNTFI QGTRFLPLPP PKRNVGRVVQ CGVRCRKKDI HPEFHGEAKV YCNGELVMTT GGTQKEYVVD VWSGNHPFYL
GNRSAVMVSD DQVEKFRKKF GELTQIMEIP VLKGEIVIPS RRKGVSKGGK KK*