GBrowse Details

Vigan.03G269300.01

Basic Information:
Name: Vigan.03G269300.01
Multiple alignment
Variant Information
Position: Chr03:40931738..40934602 (+ strand)
Length: 2865
Functional Information:
Description: Similar to Uncharacterized protein. [I1MXN1, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-type (IPR001841)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
S-ribonuclease binding protein, SBP1, pollen (IPR017066)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:168.36,107.63,23.64,25.06,31.13,41.64,26.63,23.79
Arabidopsis thaliana homolog: AT1G45976.1
Automatic updates:
Name: NM_001252768 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100783373 (LOC100783373), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:40931738..40931824 (+ strand)
Length: 87
Type: five_prime_UTR
Position: Chr03:40931825..40931898 (+ strand)
Length: 74
Type: CDS
Position: Chr03:40932056..40932156 (+ strand)
Length: 101
Type: CDS
Position: Chr03:40932486..40932808 (+ strand)
Length: 323
Type: CDS
Position: Chr03:40933801..40934328 (+ strand)
Length: 528
Type: CDS
Position: Chr03:40934329..40934602 (+ strand)
Length: 274
Type: three_prime_UTR

>Vigan.03G269300.01 class=Sequence position=Chr03:40931738..40934602 (+ strand)
CAAGTGTGGA AATTAAAAGA AACTTCTGCA TCGACCACCT CGTCATTTCC ATTTCCTTTT CTCGGTGGTG TTCTTCAATT
TCCATCCATG GCTTTCCCTC AGCACCACTT CCAACGGCAC TACCAAACCC AACAACAACA GCCACAGGCC AAACCCTTCA
GGTATTTACT ATAACTATCC TCTCAATTTT TAATGAAATT CAAACCATTT CCCTTCATTT CAACCCTTTT GGTTTTTTTT
TCCTTAATTT TTATTTACAA TTTCACCTGC TTTGCCTCTT TATATTTCCC CCCTTTATTG TTTTCTTTTT GCTTTCAGAA
ATCTGCAAAC AATAGATGGT CAGATTCCAC AGCAGGTGGC GTTTTACAAC CCTACTGATT TGCAAGATCA GTCCCAGCAT
CCACCCTACA TACCTCCCTG TATGTAAATT CTTCATCTTT ACCTTTCTTT TCTTCAGTTT TCTTCCTTTG TATTTCTAGT
TGCATATGTT TAATGCTCTG AAAAATATTA ACCCTTTAGG AAATTACCCT AGCTAGACTT GTTGGTGGCA GCTCTTTTGG
TCATTTTTAG TCAAAGTTGT TTCATTTTTA TTGTGGGGTG ATTCAACCAC TAGAAAAGTT TAGATTTTTT CGAGTCTTTT
TTGTGTGTTT TTCCTAAACA TTTCTTATGG TGTAGTTGTG GGGTTGGCAT AGTAAGTTAA CAAGTAGATT TTATGTGTAA
TGGCTTTTTT TCTTATGTTG TTGTCTAGTT CATGTTGTTG GGTTTGCTCC GGGTCCTGTT CCTCCTGCTG ATGGCAGTGA
TGGTGGAGTT GATTTGCAAT TGCAATGGAA TTATGGTTTG GAGCCAGAGA GGAAGAGACT TAAAGAACAG GACTTTTTGG
AGAACAATTC TCAGATATCT TCTGTTGATT TTCTCCAACC ACGATCAGTT TCAACTGGGT TAGGCTTGTC ACTCGACAAT
ACTCGCCTGA CATCCACCGG AGACTCAGCT TTGTTGTCGC TCATTGGCGA TGACATTGAG CGTGAGTTGC AGCAGCAGGA
TGTAGAGATA GATAGATTTC TCAAAGTGCA GGTATGCTCA GGTTTTGATG CCTAGTTTAC CATTTTATTG ATTACATGTT
CAAGGTAAAC TATTTAATGT TAAACCCATT TAGCCTCATT ATTGATGTAA ACCTGTTGTA TCTTCTACTG TTGATAATTG
CACCTGCTAA GTTTTTGCTT GAACTAGGCT TGTGCGAGTA TCTCTTCTCT AACTGATATT GTGATTTGTA TGAAACATGC
TCTCAAGTTT CATGATTAAA GGAAATACCT ATTAGAAGTG AGTTATAAGT TATGGAAATG GAAGCTTAGA GAATTCTCAT
TTGACAGTGC TGAATTACCA TGATCAAATG GAGAATCTAC CTGCATCCGT TCTAGGCATC TATATAAGTC TAATCTATGA
CCTACCCCCA AATTCTCGTC TGAACTTATA AAGGCAAGCA ATGTCAATGG TTAATGATCT ATTATCTGTT CCATGTAATG
CTTTTCATAT TTCGGACTTG TTAAAGTTTG CATATTTTCT ATTAAAGAAC TTATGTTGGT CCACACTTGA AGGAAAAAGG
TGACCCTCAA GTGCACAGTC ACTTTCATAT ATCTTCAAAA CTTTTAGTTT AAAAGAATAG TGAGTGCTCA AAATCCAATG
ATGGAATTTT ATAAAAATAT ATATGACTAG TAAGGTAGTA GAAGGATGTA GTATGCATAT GAGATGCTCA ATGTTTTACT
TGTTCAGGAG AGTAATCAAC CTTTTTGCTG CCTCTTGCTG TTATGGAATA ATTGGATCAG TTTAGTTTCT TTAGAAGGTT
TGTCAAATGC AAGAAAAAGA TAAATCTTAT GAAGGTTTGT CATTGCTTCA TTATGACAGT ATCAACAAAA CTGCTTTTCT
TTTAATTAAT TGCTTCTAAG TTCAAATACT TATGTACTAC ATTACAACTT GTGTTTTTAA CGTGATTTGG CATCTATATA
AATGAAGGAA AAAAACTATC TGATATGAAT ATGCAACATA ATTAATCTTC TCTTTTCTAA TAGGGTGAAA GGCTGCGTCA
ATCAATCTTA GAAAAGGTTC AAGCAACACA GCTTCAGAGT GTCTCACTCA TAGAAGACAA AGTACTTCAG AAACTTCGCG
AGAAAGAAGC TGAGGTTGAA AGCATCAACA AGAGGAACAT GGAACTTGAA GACCGAATGG AGCAGTTGAC TGTGGAAGCT
GGTTCGTGGC AGCAGCGAGC AAGATACAAT GAAAACATGA TTGCTGCTCT CAAGTTCAAC CTTCAGCAAG CATATGTCCA
AAGTAGAGAT AGTAAAGAAG GATGTGGTGA CAGTGAGGTT GATGACACAG CTTCTTGCTG CAATGGCCGT ACCCTTGATT
TTCATCTGCT TTCTAAGGAG AACACTGATA TGAAAGAGAT GATGACATGC AAGGCTTGCA GAGTGAATGA AGTGACCATG
GTTTTGTTAC CTTGTAAGCA TCTTTGCCTC TGTAAAGATT GTGAAAGTAA GCTTAGTTTC TGTCCTCTAT GTCAATCCTC
CAAATTTATA AGCATGGAGG TCTACATGTA ACTGCAAAGT ATACTTGTAC ACGTGAAATC TCTAATTTCA TGTCATTATT
ATGTGCGTCT GTTCTTGTAG CTTGTCTCTG AGGACCATGA CACGTTGTAA CTAGTTTCTA AGATGCATTT GACCATAATG
TGTTCCACAT GTTTGAGAAC AATGGTTATT GAAAGCATCA TGCACCGATG CAGGTGACAT TTGTACTGTG TATCACAACT
TTGTTTTCCA AAAGAAAATT GTTAGAAGAG GTAATCTTAC TATTGCTATA AATGTTTTTC CACAT

>Vigan.03G269300.01
CAAGTGTGGA AATTAAAAGA AACTTCTGCA TCGACCACCT CGTCATTTCC ATTTCCTTTT CTCGGTGGTG TTCTTCAATT
TCCATCCATG GCTTTCCCTC AGCACCACTT CCAACGGCAC TACCAAACCC AACAACAACA GCCACAGGCC AAACCCTTCA
GAAATCTGCA AACAATAGAT GGTCAGATTC CACAGCAGGT GGCGTTTTAC AACCCTACTG ATTTGCAAGA TCAGTCCCAG
CATCCACCCT ACATACCTCC CTTTCATGTT GTTGGGTTTG CTCCGGGTCC TGTTCCTCCT GCTGATGGCA GTGATGGTGG
AGTTGATTTG CAATTGCAAT GGAATTATGG TTTGGAGCCA GAGAGGAAGA GACTTAAAGA ACAGGACTTT TTGGAGAACA
ATTCTCAGAT ATCTTCTGTT GATTTTCTCC AACCACGATC AGTTTCAACT GGGTTAGGCT TGTCACTCGA CAATACTCGC
CTGACATCCA CCGGAGACTC AGCTTTGTTG TCGCTCATTG GCGATGACAT TGAGCGTGAG TTGCAGCAGC AGGATGTAGA
GATAGATAGA TTTCTCAAAG TGCAGGGTGA AAGGCTGCGT CAATCAATCT TAGAAAAGGT TCAAGCAACA CAGCTTCAGA
GTGTCTCACT CATAGAAGAC AAAGTACTTC AGAAACTTCG CGAGAAAGAA GCTGAGGTTG AAAGCATCAA CAAGAGGAAC
ATGGAACTTG AAGACCGAAT GGAGCAGTTG ACTGTGGAAG CTGGTTCGTG GCAGCAGCGA GCAAGATACA ATGAAAACAT
GATTGCTGCT CTCAAGTTCA ACCTTCAGCA AGCATATGTC CAAAGTAGAG ATAGTAAAGA AGGATGTGGT GACAGTGAGG
TTGATGACAC AGCTTCTTGC TGCAATGGCC GTACCCTTGA TTTTCATCTG CTTTCTAAGG AGAACACTGA TATGAAAGAG
ATGATGACAT GCAAGGCTTG CAGAGTGAAT GAAGTGACCA TGGTTTTGTT ACCTTGTAAG CATCTTTGCC TCTGTAAAGA
TTGTGAAAGT AAGCTTAGTT TCTGTCCTCT ATGTCAATCC TCCAAATTTA TAAGCATGGA GGTCTACATG TAACTGCAAA
GTATACTTGT ACACGTGAAA TCTCTAATTT CATGTCATTA TTATGTGCGT CTGTTCTTGT AGCTTGTCTC TGAGGACCAT
GACACGTTGT AACTAGTTTC TAAGATGCAT TTGACCATAA TGTGTTCCAC ATGTTTGAGA ACAATGGTTA TTGAAAGCAT
CATGCACCGA TGCAGGTGAC ATTTGTACTG TGTATCACAA CTTTGTTTTC CAAAAGAAAA TTGTTAGAAG AGGTAATCTT
ACTATTGCTA TAAATGTTTT TCCACAT

>Vigan.03G269300.01
ATGGCTTTCC CTCAGCACCA CTTCCAACGG CACTACCAAA CCCAACAACA ACAGCCACAG GCCAAACCCT TCAGAAATCT
GCAAACAATA GATGGTCAGA TTCCACAGCA GGTGGCGTTT TACAACCCTA CTGATTTGCA AGATCAGTCC CAGCATCCAC
CCTACATACC TCCCTTTCAT GTTGTTGGGT TTGCTCCGGG TCCTGTTCCT CCTGCTGATG GCAGTGATGG TGGAGTTGAT
TTGCAATTGC AATGGAATTA TGGTTTGGAG CCAGAGAGGA AGAGACTTAA AGAACAGGAC TTTTTGGAGA ACAATTCTCA
GATATCTTCT GTTGATTTTC TCCAACCACG ATCAGTTTCA ACTGGGTTAG GCTTGTCACT CGACAATACT CGCCTGACAT
CCACCGGAGA CTCAGCTTTG TTGTCGCTCA TTGGCGATGA CATTGAGCGT GAGTTGCAGC AGCAGGATGT AGAGATAGAT
AGATTTCTCA AAGTGCAGGG TGAAAGGCTG CGTCAATCAA TCTTAGAAAA GGTTCAAGCA ACACAGCTTC AGAGTGTCTC
ACTCATAGAA GACAAAGTAC TTCAGAAACT TCGCGAGAAA GAAGCTGAGG TTGAAAGCAT CAACAAGAGG AACATGGAAC
TTGAAGACCG AATGGAGCAG TTGACTGTGG AAGCTGGTTC GTGGCAGCAG CGAGCAAGAT ACAATGAAAA CATGATTGCT
GCTCTCAAGT TCAACCTTCA GCAAGCATAT GTCCAAAGTA GAGATAGTAA AGAAGGATGT GGTGACAGTG AGGTTGATGA
CACAGCTTCT TGCTGCAATG GCCGTACCCT TGATTTTCAT CTGCTTTCTA AGGAGAACAC TGATATGAAA GAGATGATGA
CATGCAAGGC TTGCAGAGTG AATGAAGTGA CCATGGTTTT GTTACCTTGT AAGCATCTTT GCCTCTGTAA AGATTGTGAA
AGTAAGCTTA GTTTCTGTCC TCTATGTCAA TCCTCCAAAT TTATAAGCAT GGAGGTCTAC ATGTAA

>Vigan.03G269300.01
MAFPQHHFQR HYQTQQQQPQ AKPFRNLQTI DGQIPQQVAF YNPTDLQDQS QHPPYIPPFH VVGFAPGPVP PADGSDGGVD
LQLQWNYGLE PERKRLKEQD FLENNSQISS VDFLQPRSVS TGLGLSLDNT RLTSTGDSAL LSLIGDDIER ELQQQDVEID
RFLKVQGERL RQSILEKVQA TQLQSVSLIE DKVLQKLREK EAEVESINKR NMELEDRMEQ LTVEAGSWQQ RARYNENMIA
ALKFNLQQAY VQSRDSKEGC GDSEVDDTAS CCNGRTLDFH LLSKENTDMK EMMTCKACRV NEVTMVLLPC KHLCLCKDCE
SKLSFCPLCQ SSKFISMEVY M*