GBrowse Details

Vigan.03G259800.01

Basic Information:
Name: Vigan.03G259800.01
Multiple alignment
Variant Information
Position: Chr03:39982192..39984902 (- strand)
Length: 2711
Functional Information:
Description: Similar to protein. [D7KPQ7, Arabidopsis lyrata subsp. lyrata]
InterPro: Protein of unknown function DUF3054 (IPR021414)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.22,12.13,30.28,119.17,8.23,17.38,4.80,28.67
Arabidopsis thaliana homolog: AT1G44920.1
Automatic updates:
Name: NM_001254641 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100790514 (LOC100790514), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:39982192..39982476 (- strand)
Length: 285
Type: three_prime_UTR
Position: Chr03:39982477..39982506 (- strand)
Length: 30
Type: CDS
Position: Chr03:39983031..39983216 (- strand)
Length: 186
Type: CDS
Position: Chr03:39984097..39984209 (- strand)
Length: 113
Type: CDS
Position: Chr03:39984300..39984427 (- strand)
Length: 128
Type: CDS
Position: Chr03:39984522..39984811 (- strand)
Length: 290
Type: CDS
Position: Chr03:39984812..39984902 (- strand)
Length: 91
Type: five_prime_UTR

>Vigan.03G259800.01 class=Sequence position=Chr03:39982192..39984902 (- strand)
GAAATTTGTT CAAAAATAAA TCATGTTGTG TGGATGAGAA AGTAGAATCG CTTTGGTTCT GGTTGGTGGT ATCCAAACTC
CTTGAGGAAC CATGTTTTCA AAGTGTTCTT CTCTCTCATC CGCATCCAAA TTTATCACTG TAACAAACCC TCTCCAGTTC
TCAAATCCTG CACCAAAATT CATCTCTAGA AGAAGCTCCA TAACAAGACC CTTGCATCTA GCACTCGCCA AAGACTCAGA
TTCAGCCTCC ACTTCCACTT CTTCTCCTCC TTCCTCGTTT GTCAATGACC CACCTGTTTT CGTGACTGGT GAGGATGTTC
CATTGGAGGG TGTCATCCAG TTCGAGAAAC CCAACTCTTC TCCTCAGTTT GAAAAATGGG GGTAATTTAT TTCTTTTCAT
AAAGTTATCA GTTTTCTTCA TAAAGTTGAA ACCTTGTTGA AAAATTTTAA GTGGGTCATC ATGCATGTGC TGTAGGCGTG
TGGCTCTGCT AGCTGGTGCA GACGTCTTAG CTTTGTTTTT GTTTGCTACA ATTGGAAGAT ATAGTCATGG ACTTTCTGTT
TTGGACCTTG AGACTCTTCG CACTGCTGAC CCGTTCATAG CAGGTATGTT TGTTTGTTTT GTATGTAATT GTGGAATTTG
TGTTTTTGGA GAGTTTGAGG TTTGAAAATG TTTGGTGATC TAATATTTTG CAGGGTGGTT TTTGGGTGCT TACTTCCTTG
GAGGTTTCGG AGAAGATGGG CGTGGGATGA ATGGTCTCTC CAAGGGTGTC ATTGCTACTG CTAAGTCATG GGCGGTTGGG
ATCCCTGTGA GTTGAATGTT TTTGTTCTTG TGTGAAGCTT GTTGGTTCAT TTGCAATCTT GATAGATTTT TAGCAACTAA
ATTTTGGATT TTACATTGAA AAGTTTAATA TAACATGTTC ACATCACACA AATTTGATCA AGGAAGGATT TGTTAGAATG
TGTGTACTTG AAGGGAAGCT TGAATCCATG TCCACAATCT TGAGCTAACC TTGGTTCAAT ATTTGTAGTC TTGGTTTAAA
CCCTAGTAAT AAAAGGAACA AGTGAAAACT ATTCTTTGTA AGGTGTTGGA AATTCCACGT TGACTAGAGA TAAAACCAAT
TCAAAGTATA TAAGTGAATA CAAATTTCAC TTTATAAACC GATTTTGTGG AGTTGAGTTA GGTTTAAGGT TCATTTCTTA
ACATGGTATC AGAGTCAGAT CAGCTTATAT ATATGTACCT GGGCGTGAGG GGGTGTGTTG GAAGTCCTCC GTTTTGATAT
CAAAGTGAGA GTCTAAACCA TCATAGGTTC AAATATATGT ATGTCTAAAT AACAATATTA ATTCTTATAA TCAATATTTT
TATAAAACCA AAACTAATCC AATACTTAAA TTACATTATT CCACCTAAAT ATGACAACTC TTTTAACAAT TTGTGACCTT
GGCATGAGCA ATCACTGTAT CAAGCTTCTT GGTTGGCATT TTTGCTTTAG TGTCATATGT CATTAGAACA CTTGAAATGA
AAAGATTTAC AACTGACAAA CTGATTTGTA ATGTAAGTAA ATCGAGTTGA ATCAGTAAAG TGTTAGCTAA AGATGATTGT
AGCTCTTTCA TCTGAAGTAA AACTATAATT AAAGGTTTTT TACCCACAAA ACAGATACCA TTTATCTCTT CTTGACTCCT
TGGCAGATAG GAATAGCTAT AAGGGCAGCA GGATCAGGTC ATGTACCAAA TTATGGTTTT GTATTTGTGA CTCTGGGAAG
CACTGCTGTT TTACTTATTA CATTCAGAGC ATTGCTGTAT ACTATTCTTC CTGTTGACAA CATCAAAAAG AGTGATGACT
ACCGCCGAGG TAGTCCCTTT GAACTCTTTG AGGTAAACAA GTTTTTCATC TTTGTTAGAT CTTCTGGATA TTATATTTGT
AATGGTATGA AACAACAGGT TATTCATTCA TGGAAACTGC TTAAAAGAAA GTCTTCTCAT ACAATTGCAT TTATATAAAC
ATGAACTTGT GTTACATCTT TGCTACAGCT GCTGTATCTA TGAATTTGTG TGTGTTACTA CCATACAAGA TAAACTGAAT
CAATGGAGAA ATTTTGTAGT AAAGGCTGAA GTGTGTATTG CGAATGCTCT TGTTTGCTGT AGCCAGAATA AAAGCTGTAA
CTGAGAACAA AATGGAAGTG TAACTTTTGA TTTGCACTGC AACAACTCTA ATCCAGATTA CCTGGTGGTT GCCAAAACTA
TTAATGAAGT TCTTTTTTCT TATAATGAAA ATTGAGATTT ACACAGCCTA TAATTTCTTC TTAGTGTCTA CTTCAGCACC
AAAAATTCTA AATACTTTGA ACTAATTGTG CATTGGATGC TGAATCCTGA ACAATATTTG TTCTTTACTT TTGTAGCTGC
TCACATCATT AGTTCGGCGG TGGTAGCAAT GTTGTTCAAG GCAGCATAAT GTGTACAATG TTGTTCAAGG CAGCATAATG
TGTACGCATC AGAACATTAG TTTCCATCAG TAATCTTCAT GTTAAAGGAC ATTATTAACT ATTAAGGAAT TTGAATCATC
TCTGGTCTGG TCCATTTGCA CTATATGCTG TCACATTCTG AGATCTCCCA GGTTTTCTTA ATAAGTTTAC CATTCATGTT
CAATGATGAT AAAGTAGAGG TTGTTGTAAC TAAATTCATG TAAGAGATTA TGTCACTATC TTCAACAATA A

>Vigan.03G259800.01
GAAATTTGTT CAAAAATAAA TCATGTTGTG TGGATGAGAA AGTAGAATCG CTTTGGTTCT GGTTGGTGGT ATCCAAACTC
CTTGAGGAAC CATGTTTTCA AAGTGTTCTT CTCTCTCATC CGCATCCAAA TTTATCACTG TAACAAACCC TCTCCAGTTC
TCAAATCCTG CACCAAAATT CATCTCTAGA AGAAGCTCCA TAACAAGACC CTTGCATCTA GCACTCGCCA AAGACTCAGA
TTCAGCCTCC ACTTCCACTT CTTCTCCTCC TTCCTCGTTT GTCAATGACC CACCTGTTTT CGTGACTGGT GAGGATGTTC
CATTGGAGGG TGTCATCCAG TTCGAGAAAC CCAACTCTTC TCCTCAGTTT GAAAAATGGG GGCGTGTGGC TCTGCTAGCT
GGTGCAGACG TCTTAGCTTT GTTTTTGTTT GCTACAATTG GAAGATATAG TCATGGACTT TCTGTTTTGG ACCTTGAGAC
TCTTCGCACT GCTGACCCGT TCATAGCAGG GTGGTTTTTG GGTGCTTACT TCCTTGGAGG TTTCGGAGAA GATGGGCGTG
GGATGAATGG TCTCTCCAAG GGTGTCATTG CTACTGCTAA GTCATGGGCG GTTGGGATCC CTATAGGAAT AGCTATAAGG
GCAGCAGGAT CAGGTCATGT ACCAAATTAT GGTTTTGTAT TTGTGACTCT GGGAAGCACT GCTGTTTTAC TTATTACATT
CAGAGCATTG CTGTATACTA TTCTTCCTGT TGACAACATC AAAAAGAGTG ATGACTACCG CCGAGGTAGT CCCTTTGAAC
TCTTTGAGCT GCTCACATCA TTAGTTCGGC GGTGGTAGCA ATGTTGTTCA AGGCAGCATA ATGTGTACAA TGTTGTTCAA
GGCAGCATAA TGTGTACGCA TCAGAACATT AGTTTCCATC AGTAATCTTC ATGTTAAAGG ACATTATTAA CTATTAAGGA
ATTTGAATCA TCTCTGGTCT GGTCCATTTG CACTATATGC TGTCACATTC TGAGATCTCC CAGGTTTTCT TAATAAGTTT
ACCATTCATG TTCAATGATG ATAAAGTAGA GGTTGTTGTA ACTAAATTCA TGTAAGAGAT TATGTCACTA TCTTCAACAA
TAA

>Vigan.03G259800.01
ATGTTTTCAA AGTGTTCTTC TCTCTCATCC GCATCCAAAT TTATCACTGT AACAAACCCT CTCCAGTTCT CAAATCCTGC
ACCAAAATTC ATCTCTAGAA GAAGCTCCAT AACAAGACCC TTGCATCTAG CACTCGCCAA AGACTCAGAT TCAGCCTCCA
CTTCCACTTC TTCTCCTCCT TCCTCGTTTG TCAATGACCC ACCTGTTTTC GTGACTGGTG AGGATGTTCC ATTGGAGGGT
GTCATCCAGT TCGAGAAACC CAACTCTTCT CCTCAGTTTG AAAAATGGGG GCGTGTGGCT CTGCTAGCTG GTGCAGACGT
CTTAGCTTTG TTTTTGTTTG CTACAATTGG AAGATATAGT CATGGACTTT CTGTTTTGGA CCTTGAGACT CTTCGCACTG
CTGACCCGTT CATAGCAGGG TGGTTTTTGG GTGCTTACTT CCTTGGAGGT TTCGGAGAAG ATGGGCGTGG GATGAATGGT
CTCTCCAAGG GTGTCATTGC TACTGCTAAG TCATGGGCGG TTGGGATCCC TATAGGAATA GCTATAAGGG CAGCAGGATC
AGGTCATGTA CCAAATTATG GTTTTGTATT TGTGACTCTG GGAAGCACTG CTGTTTTACT TATTACATTC AGAGCATTGC
TGTATACTAT TCTTCCTGTT GACAACATCA AAAAGAGTGA TGACTACCGC CGAGGTAGTC CCTTTGAACT CTTTGAGCTG
CTCACATCAT TAGTTCGGCG GTGGTAG

>Vigan.03G259800.01
MFSKCSSLSS ASKFITVTNP LQFSNPAPKF ISRRSSITRP LHLALAKDSD SASTSTSSPP SSFVNDPPVF VTGEDVPLEG
VIQFEKPNSS PQFEKWGRVA LLAGADVLAL FLFATIGRYS HGLSVLDLET LRTADPFIAG WFLGAYFLGG FGEDGRGMNG
LSKGVIATAK SWAVGIPIGI AIRAAGSGHV PNYGFVFVTL GSTAVLLITF RALLYTILPV DNIKKSDDYR RGSPFELFEL
LTSLVRRW*