GBrowse Details

Vigan.03G253900.01

Basic Information:
Name: Vigan.03G253900.01
Multiple alignment
Variant Information
Position: Chr03:39294336..39297919 (+ strand)
Length: 3584
Functional Information:
Description: Similar to Uncharacterized protein. [C6SWT2, Glycine max]
InterPro: Ribonucleoprotein LSM domain (IPR001163)
Ribonucleoprotein LSM domain, eukaryotic/archaea-type (IPR006649)
Like-Sm (LSM) domain (IPR010920)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:92.83,57.43,9.03,10.12,21.49,23.09,16.63,14.71
Arabidopsis thaliana homolog: AT1G65700.3
Automatic updates:
Name: NM_001250365 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305829 (LOC100305829), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:39294336..39294649 (+ strand)
Length: 314
Type: five_prime_UTR
Position: Chr03:39294650..39294686 (+ strand)
Length: 37
Type: CDS
Position: Chr03:39294870..39294910 (+ strand)
Length: 41
Type: CDS
Position: Chr03:39295005..39295079 (+ strand)
Length: 75
Type: CDS
Position: Chr03:39297059..39297111 (+ strand)
Length: 53
Type: CDS
Position: Chr03:39297220..39297310 (+ strand)
Length: 91
Type: CDS
Position: Chr03:39297311..39297919 (+ strand)
Length: 609
Type: three_prime_UTR

>Vigan.03G253900.01 class=Sequence position=Chr03:39294336..39297919 (+ strand)
ATCTTGCATA ATATATAATG TATGATTAAT TTTTTTTTCC ATAATTATGC ATAGTAAAAT TGTTAGTAAT CTTTCATGAA
CTATTTATAA TTGTTCTTAT TTTTGTATGC AACCTGGATG TCATAACCGC TAGTAGTTTG GTGTTAACAT GTAAATCCTG
CTGTTGAAGT TAAGACTTTT GATTTGGAGG TGTGGCATCA TATTTCTGCT CTACCCTGAT TGTAGCTGGT TCTGAATGTA
CATTTGCATT GCTTTAATTG ATGTTTTGAC GTTGAAACTT GTACAGGGGT GAGAGTGTTA CCTAGCTAAA AAGCATGTCA
GCTGGGCCTG GACTTGAGTC CCTTGTAGAT CGTAAGCCAT CTATAAATAT TATGTTTTGC CATGATGTTT ACTGTGCTTA
TCAATGACAA TTATTTTAGT TAATTAAACA TTGTAAACTA ATTCTCCATC AAATTTTGTT TCCGTCATCT GTGAGATATG
CTCTAAACAT GATAGTAGTT GCTATCCTTT ACTGAATCTT TTGTTTGTTG ACAGAGACAA TTTCAGTCAT TACAAATGAT
GGACGGAATA TAGTGGTATG CTTTTGTACA TGAACAAAAT TCAGTTTTTT TGTCAGTTGT CTTTTAATAA GTGTCATTGC
TCAGGCTACA AACATGTCTT TTTGTTCAGG GAGTCCTGAA GGGCTTTGAC CAGGCCACAA ACATAATTCT TGATGAGTCC
CATGAGCGAG TTTATTCTAC AAAGGTATGT GAAACTATGC AGTTGTAGAA ACATTCCTTC AAAGATTAAT GAGCCATAAC
TTTAGTGAAT TTTGATACGA AGCTTCAAAA GTTAGTTCCT TAAAAGTGGA CATGCTCACT ATTCAGGGTA AAGTAAGCCC
ATTTTTTCTA TTCAATGTTT AAAAGGCTAA GATTGACCCT TTCCGTTGAA ATGTTGTTAA ATTATTGAAT ATGAAACACA
TAAAACTTAC CCCTCTTGCC CACTTGTTCT CTCTATTAGA TGACAAGCAA GGCTATGCGG TATTAGATTC TGCATCAGGC
AAAGGGCTAG ATCCATGTCC ACCATGCAAA ATGTTAGATA TACTTGAGAG TGAGATATTT TTCCACGACT AAGAAAGACC
TTGCAAAACT GGTTTGGTAA TGCCAACATT CACAACAACC ACAGTATTTT TATCTTACTA GGAGAGGTCT GTTACATGAA
TTACACTACA CCATTGGGTT TGGTTAAAAA CCAAATTCTG AAGGATACTA TTCATCAGGA GACTCCTTTG AGTAATTTCC
TTCAATGTCC TTCTATGCTC CCTTTACCCA TTTTCACAAA ACTGAATCAT ATGATATGCT TTCTTCTTCC GTCTCTAATA
ACCTTCTTTG AAAATGTCTG TTGTTGGCAT CTATGATTTA CCAAATATTT TTCCTCTGTT CCTTATTATT GCAATATATA
TATTCACTTT TACACTTAAG CAAAATTCCT TTGGTTCTAT AATTCTCACT CCCAAAAATT TAACTACTTT CTATGATTCA
ACTTGTTATT TTTCTCCATT TTTGGTTGAA GAAAATTTAC GTTCTTTGCA TGTAATCAAT GTTTCCCCTG ATATTTTTGT
CTGTTTCATA GATATTTGTC TTTTATTATG TTGTTTGTGA GCATTGGAAT TTCCCCCTTG AATTCGAGGA CAAGAACCTT
CTAAAAGAAA GATAAAATGC TGGAATACTT CTCTGCCTTT TTATTCATTC ATTTCAGTGT TTTAATAGGA AGAGAATTCC
GATACATCTA TTAGCCTTCT GCCGCAATGA AGGGAATGGC AGAATTGGTA ATAATGGAAT GAAACTGGAA GCTTGTTAAG
AAATCTTAAA TAACAAACTC AGAAAATAAA TTTAATATTC TAGGAATTAG ATCTTCCTGT ATCTTTCAAT TTAGTCTCTG
AAATGCACAG GTTTGGAGAT GTTTCTCTTG AGTCTGTTGA CTTTTGTCCC AATGAAGCTT GGACCTTCCT TGGCATTTCT
TGAATTCCTG AATTCTTCTC AATGTTGGGC TCCCTATCAT GTTATTTTGA AAATTATCTC TCAATCTATG CCTCTGCCTC
GACAATGATT GTTGCATTTT TTGTCTTCTA TGTTTTGTTG TGCTCTTCTC TATTTTTTAT ATATGCTGCA TCTATCTTTC
TCCATAACTG GATTCTTGAG TAAAAGTGAT TTTGTGTGTA TCGGAAGTGA TGAAATGGAA GAGGGATTGT TAGCAAAAAA
ATGATGAGTA AAACAAAGTA AAGCCTTCTG TTCTAGGGGG TTCACAAAGT CTATTGCGTG CTTGTCTCCT GAAGCCCCAT
TGTTTTTTTA CTAATTACGT AACAGGTGGA ATGGTAAAGT CTTCATATAC ATGCATACAT ACATAACTAT ATATATGTCT
ATAGATTAGA AAAAAGAAAC AAAAGTAACA TTACAATTTG AAGTGTTGTT CTCAGCCGTT AAAACATGGG ACAGTAAAGT
TCTGGTTACT TCCTCCAAAG TGAGATTGTT CACTTTAGAA AAGTCAATCC CTAGCTTTGA GCTATTGATT GCTCTACCAG
GAATAGTCAA TTTTTTTTTT TAATTTTGCT ATAATATCTC CCGATCCTAA ATCTTTTCTT CATTTAAATT GTTGTATCAG
CTGAATATTA TTTCTTGAAC GTCACACTTT AAGTCTTGTG TATGTCTTCA TGATGTCATC ATGGTTCGTG TTTCTAACTG
CAGGAAGGTG TACAACAACT TGTTCTTGGT TTATACATCA TCAGGGGTGA CAACATGTAT GACCCTTACT CCATTTTTCA
AGTTGTTAAT CACATAGATT TCATGTTGTG GCACTATTTA CATGCCGTAA GTTATGTATG ATGGTTTCCC TTTGGTCATT
GCAGAAGTGT TGTTGGTGAA CTGGACGAAG ATCTGGATTC TAATCTGGAT TTATCAAAAC TTAGAGCTCA TCCCTTGAAA
CCTGTCATCC ATTGAGTGGA AATACTTTCC ATGGATCTGC TGGGTGAAAA GAGTGAGTTT TGCGGCACTT TATACCAATT
ACGCTGTGAA ACTCTCTAAG AATATGATGC CAGATAGCAG AACTTTTCCA ATATTCTGAT TCTATTAAGC ATGTAAGTTT
TGTCAAACAA ATGAATGCAA CAAACTTGTG ACTATCTGTC GTGAAGAAAC TGTCCTCTAT TTGGTTAAAA TTGATACGGA
AGTTATTTAC AAGTGAAAAA TGTGTATGAT TATAGTTATT TTAAAAAACT TACATTTTAC AAAAAAGTAA AACTCTTTCT
TTTTTCTTTT TCTGTGTGTA TTGAATTGAA TGCAGCATGA ACAAGGCATG TGAAATTGAT TTTTGAGGGG GAAGAAGATT
CGAATGTCAA CAAACACGTG TTGGTGGCAT AGGAACATTA TCTTAATTGT AGAGGTGAAT GTCATTTTAA TCATAAATTG
ATTGAATAAA TAATTTAAAA AATATACAAT TATATATTAA ATAATTAAAT TATAATAATA ATATAAGAAG AAACTAATGG
CTGGATATTT TATCTTTTAT CTTTTGTTTA TATGTTATTA CCATAAATAA TGTAATCAAT AGGG

>Vigan.03G253900.01
ATCTTGCATA ATATATAATG TATGATTAAT TTTTTTTTCC ATAATTATGC ATAGTAAAAT TGTTAGTAAT CTTTCATGAA
CTATTTATAA TTGTTCTTAT TTTTGTATGC AACCTGGATG TCATAACCGC TAGTAGTTTG GTGTTAACAT GTAAATCCTG
CTGTTGAAGT TAAGACTTTT GATTTGGAGG TGTGGCATCA TATTTCTGCT CTACCCTGAT TGTAGCTGGT TCTGAATGTA
CATTTGCATT GCTTTAATTG ATGTTTTGAC GTTGAAACTT GTACAGGGGT GAGAGTGTTA CCTAGCTAAA AAGCATGTCA
GCTGGGCCTG GACTTGAGTC CCTTGTAGAT CAGACAATTT CAGTCATTAC AAATGATGGA CGGAATATAG TGGGAGTCCT
GAAGGGCTTT GACCAGGCCA CAAACATAAT TCTTGATGAG TCCCATGAGC GAGTTTATTC TACAAAGGAA GGTGTACAAC
AACTTGTTCT TGGTTTATAC ATCATCAGGG GTGACAACAT AAGTGTTGTT GGTGAACTGG ACGAAGATCT GGATTCTAAT
CTGGATTTAT CAAAACTTAG AGCTCATCCC TTGAAACCTG TCATCCATTG AGTGGAAATA CTTTCCATGG ATCTGCTGGG
TGAAAAGAGT GAGTTTTGCG GCACTTTATA CCAATTACGC TGTGAAACTC TCTAAGAATA TGATGCCAGA TAGCAGAACT
TTTCCAATAT TCTGATTCTA TTAAGCATGT AAGTTTTGTC AAACAAATGA ATGCAACAAA CTTGTGACTA TCTGTCGTGA
AGAAACTGTC CTCTATTTGG TTAAAATTGA TACGGAAGTT ATTTACAAGT GAAAAATGTG TATGATTATA GTTATTTTAA
AAAACTTACA TTTTACAAAA AAGTAAAACT CTTTCTTTTT TCTTTTTCTG TGTGTATTGA ATTGAATGCA GCATGAACAA
GGCATGTGAA ATTGATTTTT GAGGGGGAAG AAGATTCGAA TGTCAACAAA CACGTGTTGG TGGCATAGGA ACATTATCTT
AATTGTAGAG GTGAATGTCA TTTTAATCAT AAATTGATTG AATAAATAAT TTAAAAAATA TACAATTATA TATTAAATAA
TTAAATTATA ATAATAATAT AAGAAGAAAC TAATGGCTGG ATATTTTATC TTTTATCTTT TGTTTATATG TTATTACCAT
AAATAATGTA ATCAATAGGG 

>Vigan.03G253900.01
ATGTCAGCTG GGCCTGGACT TGAGTCCCTT GTAGATCAGA CAATTTCAGT CATTACAAAT GATGGACGGA ATATAGTGGG
AGTCCTGAAG GGCTTTGACC AGGCCACAAA CATAATTCTT GATGAGTCCC ATGAGCGAGT TTATTCTACA AAGGAAGGTG
TACAACAACT TGTTCTTGGT TTATACATCA TCAGGGGTGA CAACATAAGT GTTGTTGGTG AACTGGACGA AGATCTGGAT
TCTAATCTGG ATTTATCAAA ACTTAGAGCT CATCCCTTGA AACCTGTCAT CCATTGA

>Vigan.03G253900.01
MSAGPGLESL VDQTISVITN DGRNIVGVLK GFDQATNIIL DESHERVYST KEGVQQLVLG LYIIRGDNIS VVGELDEDLD
SNLDLSKLRA HPLKPVIH*