GBrowse Details

Vigan.03G245400.01

Basic Information:
Name: Vigan.03G245400.01
Multiple alignment
Variant Information
Position: Chr03:38137251..38141756 (+ strand)
Length: 4506
Functional Information:
Description: Similar to ER membrane protein complex subunit 4-like. [XP_003550241.1, Glycine max]
InterPro: Protein of unknown function DUF1077, TMEM85 (IPR009445)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:164.70,96.86,46.50,40.84,42.46,107.08,78.23,32.16
Arabidopsis thaliana homolog: AT5G10780.2
Automatic updates:
Name: NM_001251315 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305631 (LOC100305631), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:38137251..38137570 (+ strand)
Length: 320
Type: five_prime_UTR
Position: Chr03:38137571..38137693 (+ strand)
Length: 123
Type: CDS
Position: Chr03:38137781..38137837 (+ strand)
Length: 57
Type: CDS
Position: Chr03:38137961..38138114 (+ strand)
Length: 154
Type: CDS
Position: Chr03:38139156..38139253 (+ strand)
Length: 98
Type: CDS
Position: Chr03:38139906..38139971 (+ strand)
Length: 66
Type: CDS
Position: Chr03:38141393..38141431 (+ strand)
Length: 39
Type: CDS
Position: Chr03:38141432..38141756 (+ strand)
Length: 325
Type: three_prime_UTR

>Vigan.03G245400.01 class=Sequence position=Chr03:38137251..38141756 (+ strand)
ATTTTTTTCA CCTTACTACT TTTTTTCACA TTACTACTCT ATCTTTAAAT TAAATTTTAA CGATTTAAAA AGTAACCACC
GTGAGTATTG AAAAAAAGTG CTACACTGCA GTTTTCAATT TTTTCTGTTT TCACCTGATG ACTACTACGC AAAACCACGT
CGTTTTGAGA AAAGCAAAAC GAGCGTAGAG AAACTTCTGA AACCTCACAC CAGCTTTGCC CTCACTCACC CGGCACTGAA
CGCGATCCAG AGAGAGACAC GCCGCTCCTT AACGACGCCG TTTCGTTCGG TGCTGCCGTA TTCGCAAGCA GAGAGAATCG
ATGGAGAAGG GAAAGGGAGT GATGGGATCG GGAGGAAGAA GGTGGGCCGT TGACCTCTCC GACAATTCCA CTTCTCGCGA
TATTCCCGAT CCTCCCGGTT TCTCTCGCGC TTCTCTCGAC CAGGTTCCTT CCCACGCACG CTTCAACCCT TTCAATTTCT
TTCGTCTTTT CGAATTATTT GTTTGTTTAA GTTGAATTTC AATCGTGCAG GACGACTCAA CGCTTAGTCG CCAAAAGAAG
GACGCTGAAT CCAATTGGAA AGCCCAGGTT TTTCTTCTTT TTTGTTTTCA CTATTGTTGG AGTTATGATA ATTGATTTGT
TAATTGTGGA AATATTGCTT AATTTTATTT AATATTGGTT TTTTATGATT GTTGTTTTCG TTATGAACAG AAAGCTTGGG
AGGTAGCGCA AGCCCCTTTG AAGAATTTAC TGATGATGGG GTTCATGATG TGGATGGCTG GTAGTACAGT CCACTTGTTC
AGCATTGGGA TTACTTTCTC TGCTCTTTGG CAACCCATTA GTGCCTTGCA GAGTGTCGGA AAGAGTATGT TTTCTCCTTC
TCGTCTCGTT TTAGTATATA TTAGTTCGAT TACATGGTTG ATCTTAGACG TATTATTCTC CCTTTATATT CTTAATGTCG
AATTCATTGA TCTGTGATGT GTAAGTGTGT GTTTATAGAT CAATTATTTT GTTAGCGTGG CTGGGTAAAC AGCTTGATTA
AGTGTTTTTT GGATAAGTGT TTATTATGTT AGCACGTATG GAGTATGTAC TTGTTGTTTC CTTTATCAAC AAGTAGAGAA
GACTAAGTTG TTTTCCTTAA GTTGTAAATT GTTTTTGTAA GTTATCCTCA AGAGCTTTTG AAATCAGCTA AAACTAAATT
AAGCACGCAT TGTCAGCTAT TTTTATAAAG TTTTACAAAT ATTATATAAG TGCTTATGGC TTAAGAAAAA CTCGAATAAG
TTGCAAATAA GTTTCTCCAA TGCACCCTTA GGTCCTGTTC GGTAGAGAGA AGATAAATTG GGTGAATGAA ATAAAAAGAA
TGAGTGAGAA TATGTGAAAA ATAAAATAGA AATTAAAGGT ATTTTTTGAA GAGAAATAGA GAAGATACGA GGAGAGGGAT
GGCTGGAAAT AGGTGAAAAA TAATATAGTG GGTGGGTTCC ACCAATTTCA AAATTAATTG TCCTCTAAAT CCCCTAAACC
AAACTAGGCA TTAATTGAAA GCTTCCTAAG AGAAGTTTGA AAAGAAAAAA AAAATTAAAA GCTTTGAAAA CTCAGTATTA
ATGATTGGTT AACTTTTATT TTATGGTGTT CTTTCTTCTG CATGTTCCCC TTATTTTCAG ACTTTGTTTG TTAGTTGTTC
TCTGGTATTT GAGCCTTCGA TGGTATGGAA GGAGTGTTCT TCTGGAATGG CTGATACTTT TAACTTCCTT TGGTCTTATT
ACATTGACAC AAGATGTCCC ATTAGTGAAT GTGTTTTCGG TCTTTAGGTT TACTAGCTTT TTTATTGGCT AGAACTTCAT
GAAACATCAA CTGGGGAACT TCTCTTTGGT CTGGGATTGT TAATGCATTC TATTGGTTTT TGCAGTTTTT GAGCCCTACA
AAGACAATAA GGTGGAGCTT CTTGGACCTA AGCTGTTATT TATAGCCCTT AATTTGGGTG GCTTGGCACT AGGTGTTTGG
AAGGTAATAT ATGTAGTCAT TTTTTTCCTC AGTTGTCGTC TTGAAACTTG TATTTCAAAA TTTCAAGTAA ATATATGTTC
CATTGTTGTT GTCAAACTCT TACAGTGTTG TGCGTTTATG ATCCCTTGAC ACAAAAACAA GTTAAATTGC TTGTAAGCTC
TTCTGTTTAT ATCTCATGTT CAGGCAAAAT TGTTACAAAT TTGGATAACT CTGTTTTACA AGCAAAGTTT GCAAGCCTAG
ATTTGTGTGG TTTGGCCTCA AAATGTATAC CTTTGGTTGA TTTTGTTTGA TACTTGGATT AAATTGCTTG TGTTCTGTAA
TATATAATTT TATGTTTTCA TTATTATTTT ATTCTGATTT GTAAAACTAC AACAAAAGTG TAAATGCCTG AATATAATAT
AATATGGGTC AAGTGTTGAG TTATGTTTTT ACTTTGTTAC TTATGTTTGC TTTTTATGGA GTTCAATTGT TTGATATTGA
TATGAATATG CTATTGAATT GCGTTTGAGT AATAGAAGCT GTCTTTTATT AACACTTTTG AAGATTGATT TGAGTTTACT
AGGATTTCAC AAGTTTATCT AGACTCTCAA GTTCGACAAC CTTGATTTTA TGAATTTTTT TTTAATAATT CTTATGTGAT
TATCCTGTTG TGCAGCTCAA TGCATTGGGG CTTCTTCCTA CACACACATC AGACTGGGTC TCATCCTTGC CACCTGCTCA
GGTTTGATTT CTGTTTTTGA TACATTACTT ATGTTTGAGA TATGATTTGA TTACATTAAA AATAGGTAGA TAAGATATGA
TTTGATAGGG AAATATCATA CCAAATATTT CCCATTACTA GATATTGTGT TGCTTATTAT TGTATCTCTT CTTCATTATA
AATAAGATTA CTCATGTGTA GTGTACCCAA CACATGAAAT GTTTTGTATT CCTTCTCGGT TTTTCTCTTT TCAACATGAT
AGCCGAGTGA TACTGTATTC CGTGACCTGT TTTTCCACTA ATCCTTTCAA AAACTTACAA ATTTGTGTGT TTTGTTCTAG
GCTTTGTAAT ATTTGAGCTC TGTTCAAACA ATAGTTAAAA CCTAGACATA TTATCTTGCG GGCTCCATCG TATTATAACA
AAAATCCTGA GCATGTTCTA GCTCCACTTC TGACTATTCA GTTAGGGAAA TAGATTGTTT TAACACTTTG ATGTTTTATC
TCCCAGGTTA CAGCAACACG CTTTAGAAGT CTGAATTTAA TTTGATAAAA ATTCATCTTG TCATCATCTC ATGTGAAATT
GGCGTCCAAT GTTTTTCAAA TTATGTGAAA AATAATGAAT TTCGGTATTA TGAAGATGCT TTTAGTGACA AATTCCATAT
CAAAGAGTTT ATTATTCACA ACCTGCTATT CAAGTGGCCT ATGGGGATTT TATTCGATGA ATCCACATTT CTTGTACACC
TTTTTCTTAA TATTCTTCCC ATGATGAAAT CAATAATCTA TCGTTTTTAT TGTAGCACTG CTGCTTACAG CCGTTATTGC
TTCTGGTTCT TGATTTTTCC TAACTATAGT CCCTTTCGTA CTTTTCAATT CTATAAGCTG GAATTACTCT TGACCTAGTA
TTTTTTCTAT ACTTTGGTCT CAAATTTAAA TACCTGATCT TCCTATTTTT ATGGTTTGAG CAACATTTCT TTCAAAACCA
TAAAGGAAAA AAGAAAGGCA ATGATTTATG TTAGGTAGCC GTACACTTGA AATTGCACGC TCATTGATAA TTCAAATCTA
TTCATTTTTC ATTTATTGAA CTGAAACTCG TATCAGAGGT GGCAAAAGAA TCCTTGCAAG TCATTCTATG GTATTGATGT
CATAGTAAAT ATAGAAGAAT GTGTAAAAGA AACATAGTAA GAGTTAGTGC ATTGGTGTTA GATTCTAACC AAAACACAAA
CATACTCTTT AAATTATCTT TGTAGTGTAA ACAAGATACT GTGAAGGTTT ATTTTAAAAA TAATTCTACA ACTGATTTTC
ACAGAAAAAG AAGAAAACAT CTATAACTGG TTGACGTGTC TCCTGTTTTT TGTCAATTTA AAGATCTGAT GATTGGTTGT
CATTTTCGTA ACTATGAGGC TATAACTTAT TGACGTGTCT CCTACTTTTT TCTTATCTTC AGGAGGTGGA GTTTTCAGGT
GGTGGTGTAA ATTTGGGTTG ATGTCCGATT TCTTTTCATG CCCAACTTGT CTTGGAGGCA CTTTGAGTAA ACATTGATAC
GGATTCAGGC TTAACAGCAA ATTCTAATGG TTAGATGGAC CACGTGAGGC ATGACTTGTT TCCAATTTTA AAATTTGTTA
GATAGCAATG CATTAAAGTT GGAAAGAGTT TGTAGTAGTA GACCGGGGGT GCTCCAAATA ATCAAGAACC GTTATATTTT
TATTTAGGAT TCTAATATTT GCGCATTATA ATTTTCTACA TCTCTTTCAT CAGGTTGGAT ATAAAGAAAA GTGATGTATA
AAAATCTCCC TTATATTTAA GAAGCA

>Vigan.03G245400.01
ATTTTTTTCA CCTTACTACT TTTTTTCACA TTACTACTCT ATCTTTAAAT TAAATTTTAA CGATTTAAAA AGTAACCACC
GTGAGTATTG AAAAAAAGTG CTACACTGCA GTTTTCAATT TTTTCTGTTT TCACCTGATG ACTACTACGC AAAACCACGT
CGTTTTGAGA AAAGCAAAAC GAGCGTAGAG AAACTTCTGA AACCTCACAC CAGCTTTGCC CTCACTCACC CGGCACTGAA
CGCGATCCAG AGAGAGACAC GCCGCTCCTT AACGACGCCG TTTCGTTCGG TGCTGCCGTA TTCGCAAGCA GAGAGAATCG
ATGGAGAAGG GAAAGGGAGT GATGGGATCG GGAGGAAGAA GGTGGGCCGT TGACCTCTCC GACAATTCCA CTTCTCGCGA
TATTCCCGAT CCTCCCGGTT TCTCTCGCGC TTCTCTCGAC CAGGACGACT CAACGCTTAG TCGCCAAAAG AAGGACGCTG
AATCCAATTG GAAAGCCCAG AAAGCTTGGG AGGTAGCGCA AGCCCCTTTG AAGAATTTAC TGATGATGGG GTTCATGATG
TGGATGGCTG GTAGTACAGT CCACTTGTTC AGCATTGGGA TTACTTTCTC TGCTCTTTGG CAACCCATTA GTGCCTTGCA
GAGTGTCGGA AAGATTTTTG AGCCCTACAA AGACAATAAG GTGGAGCTTC TTGGACCTAA GCTGTTATTT ATAGCCCTTA
ATTTGGGTGG CTTGGCACTA GGTGTTTGGA AGCTCAATGC ATTGGGGCTT CTTCCTACAC ACACATCAGA CTGGGTCTCA
TCCTTGCCAC CTGCTCAGGA GGTGGAGTTT TCAGGTGGTG GTGTAAATTT GGGTTGATGT CCGATTTCTT TTCATGCCCA
ACTTGTCTTG GAGGCACTTT GAGTAAACAT TGATACGGAT TCAGGCTTAA CAGCAAATTC TAATGGTTAG ATGGACCACG
TGAGGCATGA CTTGTTTCCA ATTTTAAAAT TTGTTAGATA GCAATGCATT AAAGTTGGAA AGAGTTTGTA GTAGTAGACC
GGGGGTGCTC CAAATAATCA AGAACCGTTA TATTTTTATT TAGGATTCTA ATATTTGCGC ATTATAATTT TCTACATCTC
TTTCATCAGG TTGGATATAA AGAAAAGTGA TGTATAAAAA TCTCCCTTAT ATTTAAGAAG CA

>Vigan.03G245400.01
ATGGAGAAGG GAAAGGGAGT GATGGGATCG GGAGGAAGAA GGTGGGCCGT TGACCTCTCC GACAATTCCA CTTCTCGCGA
TATTCCCGAT CCTCCCGGTT TCTCTCGCGC TTCTCTCGAC CAGGACGACT CAACGCTTAG TCGCCAAAAG AAGGACGCTG
AATCCAATTG GAAAGCCCAG AAAGCTTGGG AGGTAGCGCA AGCCCCTTTG AAGAATTTAC TGATGATGGG GTTCATGATG
TGGATGGCTG GTAGTACAGT CCACTTGTTC AGCATTGGGA TTACTTTCTC TGCTCTTTGG CAACCCATTA GTGCCTTGCA
GAGTGTCGGA AAGATTTTTG AGCCCTACAA AGACAATAAG GTGGAGCTTC TTGGACCTAA GCTGTTATTT ATAGCCCTTA
ATTTGGGTGG CTTGGCACTA GGTGTTTGGA AGCTCAATGC ATTGGGGCTT CTTCCTACAC ACACATCAGA CTGGGTCTCA
TCCTTGCCAC CTGCTCAGGA GGTGGAGTTT TCAGGTGGTG GTGTAAATTT GGGTTGA

>Vigan.03G245400.01
MEKGKGVMGS GGRRWAVDLS DNSTSRDIPD PPGFSRASLD QDDSTLSRQK KDAESNWKAQ KAWEVAQAPL KNLLMMGFMM
WMAGSTVHLF SIGITFSALW QPISALQSVG KIFEPYKDNK VELLGPKLLF IALNLGGLAL GVWKLNALGL LPTHTSDWVS
SLPPAQEVEF SGGGVNLG*