GBrowse Details

Vigan.03G215000.01

Basic Information:
Name: Vigan.03G215000.01
Multiple alignment
Variant Information
Position: Chr03:34207052..34212297 (- strand)
Length: 5246
Functional Information:
Description: Similar to ras-related protein RABC1-like. [XP_004498372.1, Cicer arietinum]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:126.13,65.26,13.95,14.70,14.98,12.65,14.76,16.04
Arabidopsis thaliana homolog: AT1G43890.1
Automatic updates:
Name: NM_001248900 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499773 (LOC100499773), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254512 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ras-related protein RABC1-like (LOC100794330), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:34207052..34207783 (- strand)
Length: 732
Type: three_prime_UTR
Position: Chr03:34207784..34207894 (- strand)
Length: 111
Type: CDS
Position: Chr03:34208579..34208707 (- strand)
Length: 129
Type: CDS
Position: Chr03:34208868..34208989 (- strand)
Length: 122
Type: CDS
Position: Chr03:34209665..34209730 (- strand)
Length: 66
Type: CDS
Position: Chr03:34210419..34210487 (- strand)
Length: 69
Type: CDS
Position: Chr03:34211864..34212005 (- strand)
Length: 142
Type: CDS
Position: Chr03:34212006..34212297 (- strand)
Length: 292
Type: five_prime_UTR

>Vigan.03G215000.01 class=Sequence position=Chr03:34207052..34212297 (- strand)
GTGTGGGTGC GAAAACACCG ACAACCAAAA CAATCACCGC AAAAGGCACG CGACAAACTT TAAACGGGTT TTCCATAACC
TTCTATACAC TCCTTCACTT CCATCCTTTC CCTTCACTTT CTGCTTCCTT CCACTTTCCA TCGAATCGAA GCAATTTCCA
AGGAATCGAA TAAAAGAAGA AAAAGAAAGA AAAGCAAAAC CCTTCTTAGA TCCAATCCAA AATTGAACCT ATCCATCAAA
TTAAGAGCCA AGTCCAAGCA TTGTCGATTG AATTTCTCAT CTGGGATTCT CAATGGATGC TTCGTCTTCC TCGAGTCAAC
CCGAATTCGA TTACTTGTTC AAGCTTCTCT TGATTGGGGA TTCCGGCGTT GGCAAAAGCA CCCTGCTTTT GAGCTTCACC
TCCGATAATT TCGAGGATCT TTCTCCCACC ATCGGTTGGT AACATTTAAA ATATATATAT AATTCTCCCA CCCTGCCTTT
GTTATCTATT TTTGTAAATT TTAGTTCAAG AGCTTCTCTC TGATGATCGG TGTTAGAAGA AATTATAAGG GGTAGAATTT
GTAGTTGAAG GTCTGAAGTG TTAGTTACCT GGTGGATTTG TGATGCGTAG AAATGTTACA AACTTACAAT ACAATCTCTA
ACACTCCTTT GAAGCACTCT TGAAATTATA AATTTTGGAT GGTTCTCACT TCTCATCTAT ATCCTCTGTC CTGATTTGAA
ATTTTTTATG ATTTGTAATC AATTTCCACC CCAAAGAGTG TTGCTAGCAG TTTTCTTCTT TTAAGTGATG TGGTAATATA
ATTATCGATG GAATTGGATG TGGTTGGTTG GTGATGTCTT TCTAATTCAT CTAGACTTGT AGGGGTTACT TTTATTTTAT
TAACGTTTCA TCCTCGAAGA GCTCATTGAG ATCTTGGTAC TCATTTTAAT TAGTCATGTG TTCTTGTGAA CTTAATTGTA
TGGTTCAGTG GCATTGTAGT CCAAGTTACT GGACAGGGTT GAAGTCACCA CTCCCAATAT TAAGGGTGTA AATGAGTGAA
CCCAAGCCGA GCACTTGAAA GTCCAAGTTT GGCTTGCAAA AACGTATGAC TCTGACTGAC TCATTTGTTT AAATGAGTCA
AAGTTTTTCT TGGCAGCGAC TTGTTTAAAA ATAAGCAACT TTTAGCTTGT TCATATATAA GTGGATTACA ATTTGCTAAA
TATATATCGT TTCTTATTTG AGATAAACAT GTATACACAC TCTATCCCTC ACACGAGCTT TTAATGTCAA ACCGATGATG
CTTGAGCATG AGTCATTTGT ATAAGTAAGC CTAAATCTTA GCCATATGCT TAAGATTATT TGGTTGGTAA AACAAACAAG
CTTGTTTGAG CAATTAATGA AATAAGCTCA AATAATTTAT TACTAGATTA GCTCATTTAC AACGCTAACT TGTATATATT
TTGACTCCTA ATACACAAGT CAGTACCTAG TCTACATGAT TGACAGGTTA TGGCCAGTCA GATCAGGCTT CATACACTTG
ATTGTTTACT GGATCTAGTA GTATCTGTTA TAGAGGATCA AATATAAATC AGGATTGGAG AATACTGGCT TCAATGTTGT
GTTAAGTAAC ATTCTATTGT TTCTAATATT TTATTTTGGT TAAAAGAAAT ATTGAGTGTT TGTCTGCATC AGTCATGATA
ACCCCATTAC GAAAGTTTAT ATCCATGTGG TTTGTTACAT AATTGTAGAG ATTCGTGCAA TTATTTATGA GAAAGTTATA
TTTTCTACTC GGTCAAATAT GCATTGATTC TTCTTATAAT CGTGTTGCAG GTGTAGATTT CAAAGTTAAG TATGTTACAA
TTGGAGGAAA AAAATTAAAA CTTGCTATTT GGGACACAGG TATTTTCAAT TTTCAATTAT AATTTCTTGA TAGGCCAAAT
CCCTTTTATT CTGTGTTGTT TGCTTTTGTT GTATACTTTC AAATTCTATA GTAGTTGGGG CTTAAGGCAA ATAACTTTTA
CCATTGCTAT GAACTCATAC TGCTAAGTGA GCGTGAAGCT ATGGAGCTCT CATGTTTTGA TCTTTAGTTA TAACATTTTC
CATCACAATT GAAATGAAAT TTTTGAAATT TATTTTTGAA TATCTCACTG TTGGTTCATT AACATATATT AGGATGCAAC
CTGGATTTTG AGATCAAGAT TAAAAATCTT AGCGCTCAGC TTTAAACAGA ATTGGGAAAG TTCTGTAACA TTGTTTAAAG
TCAGCATACT GGAATGCATC TTCTCAATGA TATTGATGTT GCTAATTGAT TAGTATAGTA TATCATAGAA TTATATCTCA
AATATATTTT GTTGATATTC AGCATATATA CAATGTATAT TTAAGAGAAC ACGAAATGCG CTGCCTATTT TGTGCAGTAT
ATACAGAGAT CAGAAGCATC TGATATACTG AATTCTGCAT TTGTTGCAAA TTTGTTTAAC TTATCCTTTA AAGAATGCAA
ATTTGTTTAC CTTATCCTTT AAAGAAGTCA TGTCATCCTT CATTTGAATA ACTTAATTGC AATACTTTGT ATTTTCTCTT
TGTGCAGCGG GGCAGGAAAG GTTTAGAACA CTTACTAGTT CATATTATAG AGGAGCTCAA GGAATAATTT TGGGTATGTT
TCATGATTTT CTCTGTACTT CGCAATATTT TTTTTTGCTA TCCAATGCAT ATGCTGTACA CTTCATTTCT TATTTGTTTA
ATTTTTGGTA TCTTGTTCAA CTGTAAATCA TACAACATGG CTCTGTATAG TTTGCACATA TTTCAATTTT ATCAATTATG
AATATATACT GTATAAATTT AACAAACTGG TGATTAAAAT GGATTCATTG ATGACATGTA TGTTGTCATT GTTTTCCTTT
GATGATGACC TTGCATGTGT ATGGTGTCAT TAAATGCTGA ATTTATTGTT GTGCATAAAA CACATTTTGT CAAATGATTT
TGCAAGTTTA TTATTATATG TGAAGAGCTG TCCAGTGGTA AGGTTACACC GTGGTACGTT CCCTTAGTGA GGAGCCTTCC
AGCACTTGGT ATGGTGAGAT GTCATGGTTA AGTTTCTGTC AGCGATATGA CCTTGACTTG CAGGAAATTT GCTTCAGATT
GAATATATCG TAAACTAAAT ACAACTGCAA CGAGAATGTT GGACATATTC CATAGATTAT TTATAGATGT TGGACGTGTT
TTGTTTCCAA ATATGATGTG ACTGTTTAAA TTGTTTAAGC ATAGAATCAT ATTCTTCTGC AGTTTATATT ATAAGTCTAT
TCAACGATTC TTGGTTGTTT GTGTACAGTA TATGATGTCA CAAGGCGGGA AACTTTTACG AATCTATCTG ATATATGGGC
TAAAGAAATT GACCTTTACT CAACCAATCA AGATTGCATC AAGATGCTTG TAGGAAACAA AGTTGATAAG GTGTGTTGTT
AGTGAACTTT TGTGTTACTC TTAGTTCTAA GAAATTGAGG GTCATTCTTG ATTCATTAAT ACTGAGTTGC AAATGCTGCT
CATGTGAACT GTCATTCAAA GTTGGCATGG AAGAAAGTAA TCCTCGTCCT AATAGGCTCT CTTATTTCAG GAAAGTGAAA
GGGTTGTCAG CAAAACTGAA GGGATAAACT TTGCAAGGGA ATATGGATGT CTATTTACTG AGTGCAGTGC AAAAACAAGA
GTCAATGTTG CACAATGTTT TGATGAGCTT GTAATGAAGG TACACATATA ATGCAACTCT TCCAAAATCC TCAAATCAAG
GAAACAGCAA GCAAGGGGAC ACTAAAATAT TTGAAATGGT TATTATTGCT ATTCTTGTGT TCTTTGGTGA TGCCTTCTCA
TAAAATATTT TTGGAACAAC TTAACTTCAA GCAATGAAAT GAATAGTAAC TTAGGAAACT TTGTTACGAT GAACAGAATT
AGCCTCTTGT TATTAGGATA CAAGCTGTGG GAATGGTTGA AAAGAGAAGT GAAACCTATT ATATGGTTGA AAATATTTTC
TATCACAATT AAAGATTCTT AAGTTTATTA ATGCAACAAA AATTACCCAT ATGCTGCAGC CAGCATGCCT GTTATATGGG
ATATAAATCT CCAAAATAAA ACAAATCCTG GCCCTATGGG AAGGGAAATC TTAGTTGTCT GAGATAACTG GAACCAAAAG
AAACAATAGA AAATAAAATA CAAAACAACT GACAAAATGC CCAAACTTTT GTATGTCCCA TCTATTTTTG TTCAGAAAGT
ACTATTTCTT ATTGACATAG ATTGCAAGAT TTACTTTTTG GAAACTTTTT GTCAATAGAA TTTAGGGTGT TGTTACTTCT
ATTTATTTGT ATAAATTACA AGTCAACACC CTCATAAAAA TGAAAGAAAT GCTTCAAATT TGAGTTTTCA TGTTTATCTG
CAGATTTTGG AGACACCAAG TCTCTTGGCT GAGGGCTCAT CTGGTGGGAA AAAGAACATC TTCAAGCAGA AAGCACAAAA
TTCTGATGCT ACAAGTGGTG GCTGCTGCTC ATGATTTACA TGTTTAAGGG GGCTTTCACC TTCCACTTCT TGGTATGATC
TGGATTTCAA GGGCAATTAA ATTCATTACG TGTAACAAAA TAACTTTATT ATAGGATGTA TATCAAGATT AAATTATTTT
TCTTCTCAAG AATTTACCTT ATGTTTAAAG ATCTCCATGT TATTTGGTTT GAGCAATCAT CTGGGCATAG TTCATAGTGC
ACCTGCATAT GAATACTGTT TGTATATATA ACGCTTTTGA TGTTTTAACA TGATCAACGC TGTGCTTCAA GGGGACATTT
TTCGTCGACA AACGCGTAGC AGTTATTAAG CTACCATCTT CTTCGACGTA AAAGTAGTAT GCAACATCAT ATATTTGTTT
AATCTGCAAC CGAGTGTTCA GATATGGCAA AGCAGTAAAT TCATAGCCAT GACCCAACGT ATCTTGTTAT CAAATTAACA
ACTAATTATT CATGGTCATT GCATATTAGA GTCAAATTAT AATTAGAAAA GAACAATTGG AACATTACCT TAATTTGACT
CAGTGGATTG AGGACAGGGC AAAAGAAAAC ACTTTGCGTC ATGCTTTAAA TGTGTATACA GTCTTAATTA GAAGCCTGTC
AGATATTGTC ATTTCATGAT GCTGATAAGG ATTGATTTAC CTCTGAAACA TGAATTCTTA TGAGAGGTTA TGTACTCGAC
GGTTGACATT TAATTAAAAA TATATCACAC TAATCTTAAA TTCAAT

>Vigan.03G215000.01
GTGTGGGTGC GAAAACACCG ACAACCAAAA CAATCACCGC AAAAGGCACG CGACAAACTT TAAACGGGTT TTCCATAACC
TTCTATACAC TCCTTCACTT CCATCCTTTC CCTTCACTTT CTGCTTCCTT CCACTTTCCA TCGAATCGAA GCAATTTCCA
AGGAATCGAA TAAAAGAAGA AAAAGAAAGA AAAGCAAAAC CCTTCTTAGA TCCAATCCAA AATTGAACCT ATCCATCAAA
TTAAGAGCCA AGTCCAAGCA TTGTCGATTG AATTTCTCAT CTGGGATTCT CAATGGATGC TTCGTCTTCC TCGAGTCAAC
CCGAATTCGA TTACTTGTTC AAGCTTCTCT TGATTGGGGA TTCCGGCGTT GGCAAAAGCA CCCTGCTTTT GAGCTTCACC
TCCGATAATT TCGAGGATCT TTCTCCCACC ATCGGTGTAG ATTTCAAAGT TAAGTATGTT ACAATTGGAG GAAAAAAATT
AAAACTTGCT ATTTGGGACA CAGCGGGGCA GGAAAGGTTT AGAACACTTA CTAGTTCATA TTATAGAGGA GCTCAAGGAA
TAATTTTGGT ATATGATGTC ACAAGGCGGG AAACTTTTAC GAATCTATCT GATATATGGG CTAAAGAAAT TGACCTTTAC
TCAACCAATC AAGATTGCAT CAAGATGCTT GTAGGAAACA AAGTTGATAA GGAAAGTGAA AGGGTTGTCA GCAAAACTGA
AGGGATAAAC TTTGCAAGGG AATATGGATG TCTATTTACT GAGTGCAGTG CAAAAACAAG AGTCAATGTT GCACAATGTT
TTGATGAGCT TGTAATGAAG ATTTTGGAGA CACCAAGTCT CTTGGCTGAG GGCTCATCTG GTGGGAAAAA GAACATCTTC
AAGCAGAAAG CACAAAATTC TGATGCTACA AGTGGTGGCT GCTGCTCATG ATTTACATGT TTAAGGGGGC TTTCACCTTC
CACTTCTTGG TATGATCTGG ATTTCAAGGG CAATTAAATT CATTACGTGT AACAAAATAA CTTTATTATA GGATGTATAT
CAAGATTAAA TTATTTTTCT TCTCAAGAAT TTACCTTATG TTTAAAGATC TCCATGTTAT TTGGTTTGAG CAATCATCTG
GGCATAGTTC ATAGTGCACC TGCATATGAA TACTGTTTGT ATATATAACG CTTTTGATGT TTTAACATGA TCAACGCTGT
GCTTCAAGGG GACATTTTTC GTCGACAAAC GCGTAGCAGT TATTAAGCTA CCATCTTCTT CGACGTAAAA GTAGTATGCA
ACATCATATA TTTGTTTAAT CTGCAACCGA GTGTTCAGAT ATGGCAAAGC AGTAAATTCA TAGCCATGAC CCAACGTATC
TTGTTATCAA ATTAACAACT AATTATTCAT GGTCATTGCA TATTAGAGTC AAATTATAAT TAGAAAAGAA CAATTGGAAC
ATTACCTTAA TTTGACTCAG TGGATTGAGG ACAGGGCAAA AGAAAACACT TTGCGTCATG CTTTAAATGT GTATACAGTC
TTAATTAGAA GCCTGTCAGA TATTGTCATT TCATGATGCT GATAAGGATT GATTTACCTC TGAAACATGA ATTCTTATGA
GAGGTTATGT ACTCGACGGT TGACATTTAA TTAAAAATAT ATCACACTAA TCTTAAATTC AAT

>Vigan.03G215000.01
ATGGATGCTT CGTCTTCCTC GAGTCAACCC GAATTCGATT ACTTGTTCAA GCTTCTCTTG ATTGGGGATT CCGGCGTTGG
CAAAAGCACC CTGCTTTTGA GCTTCACCTC CGATAATTTC GAGGATCTTT CTCCCACCAT CGGTGTAGAT TTCAAAGTTA
AGTATGTTAC AATTGGAGGA AAAAAATTAA AACTTGCTAT TTGGGACACA GCGGGGCAGG AAAGGTTTAG AACACTTACT
AGTTCATATT ATAGAGGAGC TCAAGGAATA ATTTTGGTAT ATGATGTCAC AAGGCGGGAA ACTTTTACGA ATCTATCTGA
TATATGGGCT AAAGAAATTG ACCTTTACTC AACCAATCAA GATTGCATCA AGATGCTTGT AGGAAACAAA GTTGATAAGG
AAAGTGAAAG GGTTGTCAGC AAAACTGAAG GGATAAACTT TGCAAGGGAA TATGGATGTC TATTTACTGA GTGCAGTGCA
AAAACAAGAG TCAATGTTGC ACAATGTTTT GATGAGCTTG TAATGAAGAT TTTGGAGACA CCAAGTCTCT TGGCTGAGGG
CTCATCTGGT GGGAAAAAGA ACATCTTCAA GCAGAAAGCA CAAAATTCTG ATGCTACAAG TGGTGGCTGC TGCTCATGA

>Vigan.03G215000.01
MDASSSSSQP EFDYLFKLLL IGDSGVGKST LLLSFTSDNF EDLSPTIGVD FKVKYVTIGG KKLKLAIWDT AGQERFRTLT
SSYYRGAQGI ILVYDVTRRE TFTNLSDIWA KEIDLYSTNQ DCIKMLVGNK VDKESERVVS KTEGINFARE YGCLFTECSA
KTRVNVAQCF DELVMKILET PSLLAEGSSG GKKNIFKQKA QNSDATSGGC CS*